Wall clock time and date at job start Mon Mar 30 2020 07:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 H 1.08994 * 109.47062 * 175.14127 * 3 2 1 5 5 C 1.50705 * 109.47188 * 55.13715 * 3 2 1 6 6 H 1.07995 * 120.00379 * 245.73603 * 5 3 2 7 7 C 1.37880 * 119.99687 * 65.74196 * 5 3 2 8 8 N 1.31513 * 120.00326 * 5.51548 * 7 5 3 9 9 Si 1.86797 * 119.99808 * 185.52285 * 7 5 3 10 10 H 1.48497 * 109.47073 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.47121 * 59.99580 * 9 7 5 12 12 H 1.48496 * 109.47091 * 299.99651 * 9 7 5 13 13 N 1.46897 * 109.46780 * 295.14122 * 3 2 1 14 14 C 1.46903 * 110.99997 * 279.70511 * 13 3 2 15 15 H 1.08997 * 109.46886 * 39.87578 * 14 13 3 16 16 C 1.53005 * 109.47182 * 279.87807 * 14 13 3 17 17 C 1.52997 * 109.47229 * 300.00211 * 16 14 13 18 18 C 1.53001 * 109.46884 * 299.99740 * 17 16 14 19 19 C 1.53007 * 109.47346 * 60.00141 * 18 17 16 20 20 C 1.53001 * 109.47251 * 159.87870 * 14 13 3 21 21 H 1.08999 * 109.47246 * 180.02562 * 20 14 13 22 22 C 1.52996 * 109.47030 * 299.99930 * 20 14 13 23 23 C 1.53002 * 117.49911 * 248.74591 * 22 20 14 24 24 C 1.52995 * 117.49927 * 180.08594 * 22 20 14 25 25 H 1.08999 * 109.46850 * 64.94397 * 1 2 3 26 26 H 1.09000 * 109.46984 * 184.94634 * 1 2 3 27 27 H 1.09002 * 109.46983 * 304.94079 * 1 2 3 28 28 H 1.08992 * 109.46874 * 239.99684 * 2 1 3 29 29 H 1.09004 * 109.46855 * 119.99656 * 2 1 3 30 30 H 0.97000 * 119.99921 * 355.16025 * 8 7 5 31 31 H 1.00901 * 110.99843 * 155.75739 * 13 3 2 32 32 H 1.08999 * 109.46918 * 60.00023 * 16 14 13 33 33 H 1.08999 * 109.47037 * 179.97438 * 16 14 13 34 34 H 1.09002 * 109.47524 * 59.99141 * 17 16 14 35 35 H 1.08995 * 109.47447 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47414 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47246 * 300.00222 * 18 17 16 38 38 H 1.08999 * 109.46882 * 59.99858 * 19 18 17 39 39 H 1.08999 * 109.47288 * 179.97438 * 19 18 17 40 40 H 1.09009 * 115.54889 * 34.41918 * 22 20 14 41 41 H 1.08991 * 117.50056 * 0.02562 * 23 22 20 42 42 H 1.09006 * 117.49394 * 145.02219 * 23 22 20 43 43 H 1.09005 * 117.50443 * 214.97842 * 24 22 20 44 44 H 1.09001 * 117.49940 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1266 1.4437 0.0870 5 6 1.4418 2.1869 1.1658 6 1 0.7577 3.0040 0.9911 7 6 1.7681 1.8247 2.4556 8 7 2.6822 0.9035 2.6687 9 14 0.9114 2.6422 3.9003 10 1 1.4371 2.0799 5.1702 11 1 -0.5499 2.3913 3.8158 12 1 1.1655 4.1048 3.8633 13 7 1.6485 2.1002 -1.2538 14 6 2.5584 1.7334 -2.3472 15 1 2.8106 0.6758 -2.2706 16 6 3.8356 2.5704 -2.2504 17 6 3.4817 4.0550 -2.3577 18 6 2.7985 4.3206 -3.7007 19 6 1.5213 3.4837 -3.7975 20 6 1.8752 1.9990 -3.6901 21 1 2.5501 1.7264 -4.5014 22 6 0.5981 1.1620 -3.7869 23 6 0.5795 0.0163 -4.8008 24 6 -0.2328 1.2864 -5.0655 25 1 -0.3633 0.4352 -0.9310 26 1 -0.3633 -1.0238 0.0886 27 1 -0.3633 0.5886 0.8424 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.0765 0.4291 1.9201 31 1 1.6066 3.1018 -1.1389 32 1 4.3224 2.3812 -1.2937 33 1 4.5109 2.2979 -3.0614 34 1 2.8065 4.3272 -1.5465 35 1 4.3914 4.6514 -2.2883 36 1 2.5467 5.3784 -3.7774 37 1 3.4736 4.0484 -4.5120 38 1 0.8462 3.7559 -2.9863 39 1 1.0343 3.6732 -4.7541 40 1 0.0610 1.0139 -2.8500 41 1 1.4772 -0.1415 -5.3985 42 1 0.0298 -0.8855 -4.5310 43 1 -1.3166 1.2196 -4.9700 44 1 0.1301 1.9648 -5.8376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310008052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:39 Heat of formation + Delta-G solvation = -20.379472 kcal Electronic energy + Delta-G solvation = -20167.016260 eV Core-core repulsion = 17503.944147 eV Total energy + Delta-G solvation = -2663.072113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75504 -37.88790 -36.90078 -34.02166 -32.41583 -31.31983 -29.93804 -27.05003 -25.45173 -24.29552 -23.63510 -22.70398 -21.54019 -20.93571 -19.49840 -18.96999 -17.01458 -16.48665 -16.04306 -15.66771 -15.52588 -15.37670 -14.91147 -14.64405 -14.29121 -13.94669 -13.83629 -13.58333 -13.15778 -12.92615 -12.61069 -12.56434 -12.47583 -12.35476 -12.11341 -11.96457 -11.90749 -11.75413 -11.57769 -11.30265 -11.27240 -11.12054 -10.77763 -10.53887 -10.42657 -10.33169 -8.90159 -8.51783 -6.23177 1.53359 1.60572 1.78806 2.58807 3.05606 3.26946 3.59969 3.76431 3.89102 3.95643 4.14386 4.20443 4.22409 4.43226 4.48047 4.53181 4.56326 4.60864 4.66723 4.69170 4.74947 4.80832 4.85179 4.92095 4.98093 5.04018 5.11929 5.15918 5.26422 5.27818 5.30390 5.35406 5.39969 5.42727 5.48551 5.53677 5.64983 5.69088 5.82001 5.98919 6.19250 6.58530 6.74952 6.96655 7.56347 8.85026 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.007243 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.388236 B = 3865.012990 C = 4473.149946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.212 3.788 4 H -0.044 1.044 5 C -0.588 4.588 6 H 0.047 0.953 7 C -0.026 4.026 8 N -0.941 5.941 9 Si 1.106 2.894 10 H -0.289 1.289 11 H -0.273 1.273 12 H -0.274 1.274 13 N -0.657 5.657 14 C 0.093 3.907 15 H 0.049 0.951 16 C -0.145 4.145 17 C -0.117 4.117 18 C -0.109 4.109 19 C -0.106 4.106 20 C -0.030 4.030 21 H 0.073 0.927 22 C -0.145 4.145 23 C -0.187 4.187 24 C -0.170 4.170 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.032 0.968 29 H 0.025 0.975 30 H 0.259 0.741 31 H 0.332 0.668 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 3.733 -15.446 16.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.103 3.897 4 H -0.027 1.027 5 C -0.626 4.626 6 H 0.065 0.935 7 C -0.225 4.225 8 N -0.580 5.580 9 Si 0.930 3.070 10 H -0.215 1.215 11 H -0.198 1.198 12 H -0.199 1.199 13 N -0.289 5.289 14 C -0.018 4.018 15 H 0.067 0.933 16 C -0.184 4.184 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.049 4.049 21 H 0.091 0.909 22 C -0.163 4.163 23 C -0.224 4.224 24 C -0.207 4.207 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.835 3.335 -13.961 14.631 hybrid contribution 1.203 -0.019 -0.835 1.465 sum -1.632 3.315 -14.796 15.250 Atomic orbital electron populations 1.21329 0.95176 0.98533 1.01394 1.21386 0.97344 0.97780 0.97211 1.18975 0.90741 0.92058 0.87933 1.02694 1.22191 1.29493 1.18146 0.92804 0.93462 1.26927 0.95550 0.96986 1.03023 1.70900 1.26030 1.25744 1.35292 0.83059 0.75555 0.75482 0.72943 1.21508 1.19823 1.19909 1.60648 1.50469 1.13034 1.04710 1.21503 0.90416 0.97292 0.92587 0.93302 1.22120 0.98942 0.97006 1.00371 1.21474 1.00396 0.95138 0.98438 1.21495 0.96889 1.00082 0.96181 1.21480 0.97326 0.93585 1.01948 1.20582 0.94323 0.95068 0.94881 0.90897 1.22247 0.99035 1.00858 0.94166 1.23036 1.02835 0.92904 1.03591 1.22946 0.98072 1.00235 0.99437 0.92388 0.94756 0.94273 0.94968 0.95597 0.93038 0.84842 0.95440 0.90707 0.93684 0.91650 0.90971 0.91057 0.92841 0.90677 0.88835 0.88519 0.89531 0.88992 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.53 71.98 0.69 -4.00 16 2 C -0.10 -4.69 5.45 30.60 0.17 -4.53 16 3 C 0.21 10.48 1.78 44.17 0.08 10.56 16 4 H -0.04 -2.48 6.29 -2.39 -0.02 -2.50 16 5 C -0.59 -32.01 6.92 25.60 0.18 -31.83 16 6 H 0.05 2.57 7.75 -2.91 -0.02 2.55 16 7 C -0.03 -1.49 5.29 84.66 0.45 -1.04 16 8 N -0.94 -57.26 13.20 21.45 0.28 -56.98 16 9 Si 1.11 50.49 29.91 68.60 2.05 52.54 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 N -0.66 -26.41 4.37 -473.30 -2.07 -28.48 16 14 C 0.09 3.16 2.16 44.92 0.10 3.26 16 15 H 0.05 1.86 6.76 -2.39 -0.02 1.84 16 16 C -0.15 -4.70 5.47 30.60 0.17 -4.54 16 17 C -0.12 -3.33 5.67 30.59 0.17 -3.15 16 18 C -0.11 -2.46 5.92 30.60 0.18 -2.28 16 19 C -0.11 -2.57 4.80 30.60 0.15 -2.43 16 20 C -0.03 -0.80 2.16 -10.79 -0.02 -0.82 16 21 H 0.07 1.77 7.90 -2.39 -0.02 1.76 16 22 C -0.14 -3.97 5.02 -10.80 -0.05 -4.03 16 23 C -0.19 -4.37 10.18 30.62 0.31 -4.06 16 24 C -0.17 -3.70 9.74 30.62 0.30 -3.40 16 25 H 0.06 2.37 6.56 -2.39 -0.02 2.35 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 1.87 6.89 -2.39 -0.02 1.86 16 28 H 0.03 1.42 6.97 -2.39 -0.02 1.41 16 29 H 0.03 1.37 6.18 -2.38 -0.01 1.35 16 30 H 0.26 15.97 5.62 -92.71 -0.52 15.45 16 31 H 0.33 13.61 5.06 -89.69 -0.45 13.15 16 32 H 0.03 1.07 7.04 -2.39 -0.02 1.05 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.49 6.32 -2.39 -0.02 1.47 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.52 7.08 -2.39 -0.02 1.50 16 39 H 0.07 1.54 7.29 -2.39 -0.02 1.52 16 40 H 0.09 3.16 6.18 -2.38 -0.01 3.15 16 41 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 42 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.10 1.92 7.61 -2.39 -0.02 1.90 16 Total: -1.00 -60.08 321.44 3.87 -56.21 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.75 Total: 29.00 kcal Atomic # 6 Polarization: -55.14 SS G_CDS: 2.85 Total: -52.29 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.79 Total: -85.46 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.54 kcal Total: -60.08 3.87 -56.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310008052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.828 kcal (2) G-P(sol) polarization free energy of solvation -60.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds