Wall clock time and date at job start Mon Mar 30 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47159 * 2 1 4 4 C 1.52999 * 109.47146 * 240.00437 * 2 1 3 5 5 H 1.09001 * 109.47361 * 179.82132 * 4 2 1 6 6 N 1.46903 * 109.47113 * 59.82481 * 4 2 1 7 7 C 1.46892 * 111.00116 * 98.12999 * 6 4 2 8 8 C 1.53003 * 109.47285 * 86.76268 * 7 6 4 9 9 C 1.50696 * 115.54839 * 39.85004 * 8 7 6 10 10 H 1.08000 * 120.00085 * 244.95174 * 9 8 7 11 11 C 1.37879 * 120.00148 * 64.94777 * 9 8 7 12 12 N 1.31507 * 120.00125 * 5.36186 * 11 9 8 13 13 Si 1.86808 * 119.99872 * 185.35661 * 11 9 8 14 14 H 1.48498 * 109.46513 * 90.00349 * 13 11 9 15 15 H 1.48502 * 109.46899 * 210.00375 * 13 11 9 16 16 H 1.48498 * 109.47295 * 330.00417 * 13 11 9 17 17 C 1.52998 * 117.50113 * 254.13983 * 8 7 6 18 18 C 1.53000 * 60.00226 * 252.51052 * 17 8 7 19 19 C 1.52995 * 109.46927 * 299.82339 * 4 2 1 20 20 C 1.53775 * 113.61573 * 277.49742 * 19 4 2 21 21 C 1.53790 * 87.08117 * 220.01931 * 20 19 4 22 22 C 1.53778 * 87.07899 * 25.43444 * 21 20 19 23 23 H 1.08994 * 109.47418 * 59.99277 * 1 2 3 24 24 H 1.08998 * 109.46671 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46730 * 299.99772 * 1 2 3 26 26 H 1.08996 * 109.47561 * 120.00199 * 2 1 3 27 27 H 1.09000 * 109.46809 * 58.16804 * 3 2 1 28 28 H 1.08997 * 109.47514 * 178.16582 * 3 2 1 29 29 H 1.08996 * 109.47223 * 298.16912 * 3 2 1 30 30 H 1.00899 * 111.00093 * 334.17706 * 6 4 2 31 31 H 1.09000 * 109.47509 * 206.76139 * 7 6 4 32 32 H 1.09003 * 109.47496 * 326.76216 * 7 6 4 33 33 H 0.96998 * 120.00237 * 184.99747 * 12 11 9 34 34 H 1.08998 * 117.49822 * 359.97438 * 17 8 7 35 35 H 1.08997 * 117.50290 * 145.01969 * 17 8 7 36 36 H 1.09000 * 117.49959 * 252.51466 * 18 17 8 37 37 H 1.08996 * 117.51883 * 107.48032 * 18 17 8 38 38 H 1.08997 * 112.84928 * 48.80791 * 19 4 2 39 39 H 1.09002 * 113.61403 * 334.56259 * 20 19 4 40 40 H 1.09003 * 113.61842 * 105.47084 * 20 19 4 41 41 H 1.09000 * 113.60947 * 270.88240 * 21 20 19 42 42 H 1.09004 * 113.61129 * 139.97886 * 21 20 19 43 43 H 1.09004 * 113.61195 * 220.02130 * 22 21 20 44 44 H 1.08995 * 113.69561 * 89.12988 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 3.1300 -0.7184 -1.2509 6 7 1.5469 -0.0310 -2.4487 7 6 2.5682 0.8737 -2.9928 8 6 3.4812 0.0985 -3.9450 9 6 2.7918 -0.9040 -4.8341 10 1 3.0013 -1.9577 -4.7237 11 6 1.8935 -0.4761 -5.7886 12 7 1.7166 0.8105 -5.9951 13 14 0.9278 -1.7241 -6.7884 14 1 -0.3443 -2.0399 -6.0902 15 1 0.6297 -1.1601 -8.1294 16 1 1.7302 -2.9644 -6.9402 17 6 4.8886 -0.2438 -3.4521 18 6 4.6930 0.8358 -4.5185 19 6 1.5336 -2.1649 -1.2471 20 6 2.3858 -3.1153 -0.3898 21 6 2.1987 -4.1602 -1.5026 22 6 1.9928 -2.9805 -2.4673 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6501 1.9657 0.8731 28 1 3.1295 1.4428 0.0329 29 1 1.7038 1.9468 -0.9059 30 1 0.6906 0.4659 -2.2536 31 1 2.0831 1.6853 -3.5350 32 1 3.1610 1.2858 -2.1761 33 1 1.0337 1.1130 -6.6140 34 1 5.1643 0.0837 -2.4497 35 1 5.3161 -1.1944 -3.7708 36 1 4.9918 0.5953 -5.5388 37 1 4.8396 1.8731 -4.2178 38 1 0.4640 -2.2379 -1.0505 39 1 3.4181 -2.7868 -0.2685 40 1 1.9153 -3.3929 0.5535 41 1 1.3112 -4.7799 -1.3748 42 1 3.0966 -4.7424 -1.7102 43 1 1.2048 -3.1493 -3.2013 44 1 2.9167 -2.6142 -2.9148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324870624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:19 Heat of formation + Delta-G solvation = 36.073710 kcal Electronic energy + Delta-G solvation = -20415.378552 eV Core-core repulsion = 17754.754432 eV Total energy + Delta-G solvation = -2660.624120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.18937 -36.76118 -35.66708 -31.74076 -31.68855 -27.83959 -26.73741 -25.42311 -24.91837 -23.64642 -22.30237 -21.05434 -19.21627 -18.77573 -18.58734 -15.77784 -15.56159 -15.04720 -14.66058 -14.37415 -14.11145 -13.58240 -13.27486 -12.91244 -12.53386 -12.48559 -11.94310 -11.78663 -11.60057 -11.45081 -11.31643 -11.09258 -10.83848 -10.77078 -10.69216 -10.42416 -10.37837 -10.19294 -9.88071 -9.68394 -9.54221 -9.49546 -9.22174 -8.74389 -8.26952 -7.82547 -7.10703 -5.79062 -3.75034 3.44884 3.50572 3.53538 4.62510 4.91933 5.06858 5.18450 5.27131 5.30837 5.38499 5.47451 5.54600 5.64151 5.78419 5.82265 5.91022 5.94580 6.02154 6.11298 6.18340 6.23862 6.26918 6.28833 6.31320 6.42244 6.46380 6.51890 6.60999 6.66336 6.68183 6.81786 6.82536 6.90511 7.05815 7.13763 7.20386 7.32436 7.51714 7.61243 8.13839 8.24688 8.54746 8.71949 9.17915 9.85035 11.32292 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.009568 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.055450 B = 2925.589533 C = 3397.966764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.149 4.149 4 C 0.109 3.891 5 H 0.070 0.930 6 N -0.645 5.645 7 C 0.107 3.893 8 C 0.069 3.931 9 C -0.444 4.444 10 H 0.057 0.943 11 C 0.077 3.923 12 N -0.890 5.890 13 Si 0.878 3.122 14 H -0.282 1.282 15 H -0.294 1.294 16 H -0.278 1.278 17 C -0.217 4.217 18 C -0.184 4.184 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.155 4.155 22 C -0.105 4.105 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.322 0.678 31 H 0.068 0.932 32 H 0.004 0.996 33 H 0.253 0.747 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -2.401 11.441 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.206 4.206 4 C -0.002 4.002 5 H 0.088 0.912 6 N -0.275 5.275 7 C -0.022 4.022 8 C 0.068 3.932 9 C -0.481 4.481 10 H 0.075 0.925 11 C -0.123 4.123 12 N -0.529 5.529 13 Si 0.707 3.293 14 H -0.208 1.208 15 H -0.221 1.221 16 H -0.203 1.203 17 C -0.255 4.255 18 C -0.222 4.222 19 C -0.111 4.111 20 C -0.174 4.174 21 C -0.192 4.192 22 C -0.143 4.143 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.142 0.858 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.687 -2.776 10.829 11.200 hybrid contribution -0.611 0.161 0.117 0.643 sum -1.299 -2.615 10.945 11.328 Atomic orbital electron populations 1.21859 0.95609 1.01813 1.01099 1.21782 0.96041 0.96284 1.00259 1.21927 1.00724 0.96523 1.01425 1.21576 0.98491 0.92790 0.87360 0.91223 1.60132 1.05617 1.33713 1.27993 1.21477 0.92942 0.93666 0.94101 1.18937 0.83851 0.95916 0.94498 1.20170 1.22980 0.91445 1.13542 0.92502 1.24719 0.96868 0.94492 0.96269 1.69972 1.32868 1.13061 1.36961 0.86830 0.81063 0.82025 0.79370 1.20837 1.22093 1.20348 1.22947 1.06639 0.99332 0.96541 1.22706 1.09072 0.93795 0.96659 1.22474 0.98433 0.93331 0.96832 1.22923 1.00165 0.97728 0.96614 1.22941 1.00610 0.97112 0.98578 1.22782 1.03069 0.93061 0.95366 0.92308 0.92309 0.93621 0.91750 0.93522 0.93026 0.92295 0.85841 0.91331 0.97811 0.93744 0.92362 0.91015 0.90536 0.92421 0.90339 0.90759 0.92876 0.91427 0.92470 0.92185 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.69 37.16 0.32 -1.57 16 2 C -0.12 -1.71 2.73 -90.62 -0.25 -1.96 16 3 C -0.15 -2.04 7.91 37.16 0.29 -1.75 16 4 C 0.11 1.79 1.60 -67.71 -0.11 1.68 16 5 H 0.07 1.27 7.15 -51.93 -0.37 0.90 16 6 N -0.65 -12.47 5.11 -106.73 -0.54 -13.01 16 7 C 0.11 2.29 4.44 -3.83 -0.02 2.28 16 8 C 0.07 1.62 1.58 -155.66 -0.25 1.37 16 9 C -0.44 -11.45 7.20 -34.44 -0.25 -11.70 16 10 H 0.06 1.50 6.24 -52.49 -0.33 1.17 16 11 C 0.08 2.07 5.39 -17.82 -0.10 1.97 16 12 N -0.89 -24.82 12.68 55.43 0.70 -24.11 16 13 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.22 -4.67 9.69 -26.73 -0.26 -4.93 16 18 C -0.18 -4.27 9.95 -26.73 -0.27 -4.53 16 19 C -0.09 -1.46 3.10 -89.81 -0.28 -1.74 16 20 C -0.14 -1.92 7.63 -25.92 -0.20 -2.12 16 21 C -0.15 -2.29 8.08 -25.92 -0.21 -2.50 16 22 C -0.11 -1.90 6.81 -25.92 -0.18 -2.07 16 23 H 0.06 0.81 6.21 -51.93 -0.32 0.48 16 24 H 0.06 0.75 6.26 -51.93 -0.33 0.42 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.72 7.92 -51.93 -0.41 0.31 16 29 H 0.06 0.88 6.13 -51.93 -0.32 0.56 16 30 H 0.32 5.98 5.85 -39.29 -0.23 5.75 16 31 H 0.07 1.64 7.74 -51.93 -0.40 1.24 16 32 H 0.00 0.08 5.74 -51.93 -0.30 -0.22 16 33 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 34 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.08 1.88 8.14 -51.93 -0.42 1.45 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.23 6.18 -51.93 -0.32 0.91 16 39 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.10 2.03 6.08 -51.93 -0.32 1.71 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -26.42 330.77 -9.45 -35.87 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.84 Total: 7.40 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -1.73 Total: -27.56 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.16 Total: -37.12 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.42 -9.45 -35.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324870624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.948 kcal (2) G-P(sol) polarization free energy of solvation -26.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds