Wall clock time and date at job start Mon Mar 30 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47159 * 2 1 4 4 C 1.52999 * 109.47146 * 240.00437 * 2 1 3 5 5 H 1.09001 * 109.47361 * 179.82132 * 4 2 1 6 6 N 1.46903 * 109.47113 * 59.82481 * 4 2 1 7 7 C 1.46892 * 111.00116 * 98.12999 * 6 4 2 8 8 C 1.53003 * 109.47285 * 86.76268 * 7 6 4 9 9 C 1.50696 * 115.54839 * 39.85004 * 8 7 6 10 10 H 1.08000 * 120.00085 * 244.95174 * 9 8 7 11 11 C 1.37879 * 120.00148 * 64.94777 * 9 8 7 12 12 N 1.31507 * 120.00125 * 5.36186 * 11 9 8 13 13 Si 1.86808 * 119.99872 * 185.35661 * 11 9 8 14 14 H 1.48498 * 109.46513 * 90.00349 * 13 11 9 15 15 H 1.48502 * 109.46899 * 210.00375 * 13 11 9 16 16 H 1.48498 * 109.47295 * 330.00417 * 13 11 9 17 17 C 1.52998 * 117.50113 * 254.13983 * 8 7 6 18 18 C 1.53000 * 60.00226 * 252.51052 * 17 8 7 19 19 C 1.52995 * 109.46927 * 299.82339 * 4 2 1 20 20 C 1.53775 * 113.61573 * 277.49742 * 19 4 2 21 21 C 1.53790 * 87.08117 * 220.01931 * 20 19 4 22 22 C 1.53778 * 87.07899 * 25.43444 * 21 20 19 23 23 H 1.08994 * 109.47418 * 59.99277 * 1 2 3 24 24 H 1.08998 * 109.46671 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46730 * 299.99772 * 1 2 3 26 26 H 1.08996 * 109.47561 * 120.00199 * 2 1 3 27 27 H 1.09000 * 109.46809 * 58.16804 * 3 2 1 28 28 H 1.08997 * 109.47514 * 178.16582 * 3 2 1 29 29 H 1.08996 * 109.47223 * 298.16912 * 3 2 1 30 30 H 1.00899 * 111.00093 * 334.17706 * 6 4 2 31 31 H 1.09000 * 109.47509 * 206.76139 * 7 6 4 32 32 H 1.09003 * 109.47496 * 326.76216 * 7 6 4 33 33 H 0.96998 * 120.00237 * 184.99747 * 12 11 9 34 34 H 1.08998 * 117.49822 * 359.97438 * 17 8 7 35 35 H 1.08997 * 117.50290 * 145.01969 * 17 8 7 36 36 H 1.09000 * 117.49959 * 252.51466 * 18 17 8 37 37 H 1.08996 * 117.51883 * 107.48032 * 18 17 8 38 38 H 1.08997 * 112.84928 * 48.80791 * 19 4 2 39 39 H 1.09002 * 113.61403 * 334.56259 * 20 19 4 40 40 H 1.09003 * 113.61842 * 105.47084 * 20 19 4 41 41 H 1.09000 * 113.60947 * 270.88240 * 21 20 19 42 42 H 1.09004 * 113.61129 * 139.97886 * 21 20 19 43 43 H 1.09004 * 113.61195 * 220.02130 * 22 21 20 44 44 H 1.08995 * 113.69561 * 89.12988 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 3.1300 -0.7184 -1.2509 6 7 1.5469 -0.0310 -2.4487 7 6 2.5682 0.8737 -2.9928 8 6 3.4812 0.0985 -3.9450 9 6 2.7918 -0.9040 -4.8341 10 1 3.0013 -1.9577 -4.7237 11 6 1.8935 -0.4761 -5.7886 12 7 1.7166 0.8105 -5.9951 13 14 0.9278 -1.7241 -6.7884 14 1 -0.3443 -2.0399 -6.0902 15 1 0.6297 -1.1601 -8.1294 16 1 1.7302 -2.9644 -6.9402 17 6 4.8886 -0.2438 -3.4521 18 6 4.6930 0.8358 -4.5185 19 6 1.5336 -2.1649 -1.2471 20 6 2.3858 -3.1153 -0.3898 21 6 2.1987 -4.1602 -1.5026 22 6 1.9928 -2.9805 -2.4673 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6501 1.9657 0.8731 28 1 3.1295 1.4428 0.0329 29 1 1.7038 1.9468 -0.9059 30 1 0.6906 0.4659 -2.2536 31 1 2.0831 1.6853 -3.5350 32 1 3.1610 1.2858 -2.1761 33 1 1.0337 1.1130 -6.6140 34 1 5.1643 0.0837 -2.4497 35 1 5.3161 -1.1944 -3.7708 36 1 4.9918 0.5953 -5.5388 37 1 4.8396 1.8731 -4.2178 38 1 0.4640 -2.2379 -1.0505 39 1 3.4181 -2.7868 -0.2685 40 1 1.9153 -3.3929 0.5535 41 1 1.3112 -4.7799 -1.3748 42 1 3.0966 -4.7424 -1.7102 43 1 1.2048 -3.1493 -3.2013 44 1 2.9167 -2.6142 -2.9148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324870624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:18 Heat of formation + Delta-G solvation = 23.666985 kcal Electronic energy + Delta-G solvation = -20415.916548 eV Core-core repulsion = 17754.754432 eV Total energy + Delta-G solvation = -2661.162116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51520 -38.38070 -37.08049 -33.78604 -33.12878 -29.12665 -27.88693 -27.37038 -26.26514 -25.22854 -23.56102 -22.87244 -20.73479 -20.38393 -19.88246 -17.71307 -16.87977 -16.52267 -16.26895 -15.88457 -15.65103 -15.12367 -14.74197 -14.41645 -14.03685 -13.61118 -13.54257 -13.24020 -12.94725 -12.87350 -12.74685 -12.70417 -12.57365 -12.33649 -12.26912 -11.99904 -11.89377 -11.55642 -11.44570 -11.20846 -10.95717 -10.85352 -10.73004 -10.62174 -10.23139 -9.72991 -8.61439 -7.87260 -5.85101 1.45627 1.48977 1.53704 2.58892 3.36729 3.57650 3.68695 3.88180 4.02083 4.15149 4.16835 4.21499 4.34692 4.42311 4.55092 4.58161 4.70017 4.76121 4.82447 4.88450 4.92262 4.98186 5.00837 5.02136 5.09062 5.14746 5.16949 5.20557 5.24504 5.26971 5.30218 5.38160 5.48009 5.52839 5.57020 5.66373 5.71139 5.78288 5.94452 6.07275 6.57871 6.81954 7.03215 7.14499 7.75872 9.23230 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.009568 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.055450 B = 2925.589533 C = 3397.966764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.146 4.146 4 C 0.112 3.888 5 H 0.053 0.947 6 N -0.658 5.658 7 C 0.125 3.875 8 C 0.047 3.953 9 C -0.435 4.435 10 H 0.047 0.953 11 C 0.038 3.962 12 N -0.914 5.914 13 Si 0.923 3.077 14 H -0.283 1.283 15 H -0.298 1.298 16 H -0.277 1.277 17 C -0.192 4.192 18 C -0.193 4.193 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.145 4.145 22 C -0.117 4.117 23 H 0.045 0.955 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.325 0.675 31 H 0.037 0.963 32 H 0.018 0.982 33 H 0.249 0.751 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.032 0.968 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 -3.225 13.863 14.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.204 4.204 4 C 0.002 3.998 5 H 0.071 0.929 6 N -0.288 5.288 7 C -0.005 4.005 8 C 0.046 3.954 9 C -0.474 4.474 10 H 0.065 0.935 11 C -0.160 4.160 12 N -0.555 5.555 13 Si 0.752 3.248 14 H -0.209 1.209 15 H -0.225 1.225 16 H -0.202 1.202 17 C -0.229 4.229 18 C -0.232 4.232 19 C -0.109 4.109 20 C -0.159 4.159 21 C -0.182 4.182 22 C -0.155 4.155 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.145 0.855 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.800 -3.617 13.259 13.767 hybrid contribution -0.539 0.388 -0.647 0.927 sum -1.339 -3.230 12.612 13.088 Atomic orbital electron populations 1.21828 0.94756 1.02101 1.01366 1.21693 0.96659 0.96045 0.99174 1.21895 1.00507 0.96501 1.01468 1.21538 0.97485 0.93182 0.87582 0.92858 1.60063 1.05392 1.33383 1.29995 1.21163 0.92820 0.92754 0.93744 1.19077 0.84828 0.96219 0.95271 1.20313 1.22357 0.91427 1.13268 0.93535 1.25183 0.97985 0.95471 0.97368 1.70069 1.33510 1.14085 1.37858 0.86114 0.80043 0.80538 0.78094 1.20900 1.22502 1.20248 1.22897 1.04546 0.98459 0.96959 1.22651 1.09378 0.94870 0.96267 1.22489 0.99148 0.93038 0.96212 1.22825 0.99910 0.96082 0.97117 1.22908 1.01499 0.96475 0.97350 1.22686 1.00845 0.96051 0.95930 0.93654 0.92013 0.91711 0.90069 0.91500 0.93402 0.94083 0.85500 0.94443 0.96357 0.94223 0.90073 0.91213 0.92556 0.91443 0.89747 0.90742 0.90351 0.89982 0.91986 0.94926 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.69 71.98 0.63 -2.69 16 2 C -0.12 -2.90 2.73 -10.79 -0.03 -2.93 16 3 C -0.15 -3.69 7.91 71.98 0.57 -3.12 16 4 C 0.11 3.54 1.60 44.91 0.07 3.61 16 5 H 0.05 1.86 7.15 -2.39 -0.02 1.84 16 6 N -0.66 -25.33 5.11 -491.58 -2.51 -27.84 16 7 C 0.12 5.36 4.44 86.31 0.38 5.74 16 8 C 0.05 2.22 1.58 -52.93 -0.08 2.14 16 9 C -0.44 -22.85 7.20 25.60 0.18 -22.66 16 10 H 0.05 2.50 6.24 -2.91 -0.02 2.48 16 11 C 0.04 2.05 5.39 84.66 0.46 2.51 16 12 N -0.91 -52.12 12.68 21.45 0.27 -51.85 16 13 Si 0.92 44.85 29.54 68.60 2.03 46.88 16 14 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 15 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 17 C -0.19 -8.05 9.69 30.59 0.30 -7.76 16 18 C -0.19 -8.99 9.95 30.60 0.30 -8.69 16 19 C -0.09 -2.70 3.10 -10.27 -0.03 -2.73 16 20 C -0.12 -3.03 7.63 31.12 0.24 -2.80 16 21 C -0.14 -3.97 8.08 31.12 0.25 -3.71 16 22 C -0.12 -4.18 6.81 31.12 0.21 -3.97 16 23 H 0.04 1.17 6.21 -2.39 -0.01 1.16 16 24 H 0.06 1.39 6.26 -2.39 -0.01 1.38 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.23 7.92 -2.39 -0.02 1.21 16 29 H 0.04 1.18 6.13 -2.39 -0.01 1.16 16 30 H 0.33 12.07 5.85 -89.69 -0.52 11.54 16 31 H 0.04 1.82 7.74 -2.39 -0.02 1.81 16 32 H 0.02 0.73 5.74 -2.39 -0.01 0.71 16 33 H 0.25 13.91 8.32 -92.71 -0.77 13.14 16 34 H 0.08 3.04 8.08 -2.39 -0.02 3.02 16 35 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.08 2.46 6.18 -2.39 -0.01 2.44 16 39 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 2.89 6.08 -2.39 -0.01 2.87 16 Total: -1.00 -56.77 330.77 3.67 -53.10 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.43 Total: 26.78 kcal Atomic # 6 Polarization: -50.51 SS G_CDS: 3.45 Total: -47.07 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -2.24 Total: -79.69 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -56.77 3.67 -53.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324870624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.767 kcal (2) G-P(sol) polarization free energy of solvation -56.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds