Wall clock time and date at job start Mon Mar 30 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46998 * 2 1 4 4 H 1.09008 * 109.47337 * 302.86738 * 3 2 1 5 5 C 1.52995 * 109.47483 * 182.86315 * 3 2 1 6 6 C 1.53785 * 113.61646 * 159.13335 * 5 3 2 7 7 C 1.53955 * 87.01911 * 220.05190 * 6 5 3 8 8 C 1.53773 * 87.11308 * 25.36367 * 7 6 5 9 9 N 1.46903 * 109.47155 * 62.86256 * 3 2 1 10 10 C 1.46902 * 111.00206 * 194.87983 * 9 3 2 11 11 C 1.46903 * 110.99774 * 70.92972 * 9 3 2 12 12 C 1.53003 * 109.47051 * 195.81865 * 11 9 3 13 13 C 1.50696 * 115.55011 * 39.41142 * 12 11 9 14 14 H 1.08008 * 120.00140 * 272.30814 * 13 12 11 15 15 C 1.37877 * 120.00231 * 92.31507 * 13 12 11 16 16 N 1.31510 * 119.99531 * 4.17176 * 15 13 12 17 17 Si 1.86796 * 120.00117 * 184.17704 * 15 13 12 18 18 H 1.48506 * 109.47438 * 89.99603 * 17 15 13 19 19 H 1.48498 * 109.47081 * 209.99795 * 17 15 13 20 20 H 1.48502 * 109.46989 * 329.99630 * 17 15 13 21 21 C 1.53007 * 117.49714 * 253.70443 * 12 11 9 22 22 C 1.52996 * 117.49852 * 185.08388 * 12 11 9 23 23 H 1.08998 * 109.47394 * 304.84373 * 1 2 3 24 24 H 1.09004 * 109.46974 * 64.84801 * 1 2 3 25 25 H 1.08996 * 109.46504 * 184.84193 * 1 2 3 26 26 H 1.08996 * 109.47421 * 240.00039 * 2 1 3 27 27 H 1.09003 * 109.47257 * 119.99808 * 2 1 3 28 28 H 1.08998 * 112.85312 * 290.33650 * 5 3 2 29 29 H 1.08992 * 113.61750 * 334.57562 * 6 5 3 30 30 H 1.09001 * 113.60781 * 105.47399 * 6 5 3 31 31 H 1.09003 * 113.53452 * 270.81332 * 7 6 5 32 32 H 1.09003 * 113.74320 * 139.95070 * 7 6 5 33 33 H 1.09004 * 113.61550 * 220.08737 * 8 7 6 34 34 H 1.09004 * 113.61379 * 89.18528 * 8 7 6 35 35 H 1.09005 * 109.47025 * 52.96587 * 10 9 3 36 36 H 1.08999 * 109.47021 * 172.96150 * 10 9 3 37 37 H 1.08996 * 109.47316 * 292.96733 * 10 9 3 38 38 H 1.08995 * 109.47293 * 315.81643 * 11 9 3 39 39 H 1.08999 * 109.47191 * 75.81737 * 11 9 3 40 40 H 0.97009 * 119.99858 * 185.01108 * 16 15 13 41 41 H 1.09005 * 117.49799 * 359.97438 * 21 12 11 42 42 H 1.08998 * 117.49538 * 145.01626 * 21 12 11 43 43 H 1.08998 * 117.50119 * 214.97388 * 22 12 11 44 44 H 1.09003 * 117.49890 * 359.97360 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6353 1.9710 -0.8632 5 6 3.5683 1.4432 -0.0721 6 6 4.1604 2.7683 -0.5804 7 6 5.1708 1.9196 -1.3735 8 6 4.1250 0.7925 -1.3494 9 7 1.6076 2.1147 1.2325 10 6 1.7637 3.5711 1.1205 11 6 2.3352 1.5955 2.3984 12 6 1.6085 2.0105 3.6793 13 6 0.1037 1.9565 3.6194 14 1 -0.4537 2.8107 3.2642 15 6 -0.5617 0.8167 4.0183 16 7 0.1101 -0.1926 4.5277 17 14 -2.4174 0.7061 3.8350 18 1 -2.7504 0.1357 2.5049 19 1 -2.9688 -0.1687 4.9009 20 1 -3.0083 2.0633 3.9536 21 6 2.2431 3.1165 4.5249 22 6 2.2752 1.6667 5.0127 23 1 -0.3634 0.5871 0.8434 24 1 -0.3633 0.4368 -0.9303 25 1 -0.3632 -1.0240 0.0867 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 4.0353 1.0787 0.8428 29 1 3.4782 3.3379 -1.2114 30 1 4.6166 3.3720 0.2041 31 1 6.0770 1.6864 -0.8144 32 1 5.3770 2.3028 -2.3729 33 1 4.5527 -0.1965 -1.1848 34 1 3.4330 0.8209 -2.1911 35 1 1.2610 3.9221 0.2192 36 1 1.3222 4.0521 1.9933 37 1 2.8234 3.8199 1.0657 38 1 2.3814 0.5080 2.3430 39 1 3.3464 2.0023 2.4063 40 1 -0.3470 -1.0213 4.7408 41 1 3.1786 3.5482 4.1689 42 1 1.5722 3.8054 5.0379 43 1 1.6255 1.4019 5.8468 44 1 3.2314 1.1445 4.9774 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325820329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:39 Heat of formation + Delta-G solvation = 42.842406 kcal Electronic energy + Delta-G solvation = -20275.607154 eV Core-core repulsion = 17615.276547 eV Total energy + Delta-G solvation = -2660.330607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.60866 -36.94805 -35.07402 -32.17930 -31.61088 -27.40668 -26.87310 -25.38736 -25.17045 -23.73828 -22.17427 -20.91750 -19.61692 -19.44604 -18.39641 -15.90116 -15.68577 -14.95903 -14.78051 -14.37504 -14.14205 -13.51236 -13.15411 -12.90580 -12.46680 -12.40084 -12.32281 -11.92674 -11.62165 -11.35918 -11.26095 -11.08718 -10.90183 -10.76694 -10.60128 -10.44470 -10.35396 -10.29810 -10.11974 -10.04534 -9.82286 -9.68163 -9.23229 -8.79552 -8.15608 -7.86507 -7.15295 -5.81581 -3.82444 3.41754 3.48048 3.51122 4.56982 4.65557 4.78748 4.87261 4.95926 5.08659 5.41456 5.50636 5.58991 5.65379 5.79726 5.82713 5.84985 5.92981 5.96702 6.01844 6.08802 6.14728 6.19665 6.30413 6.33512 6.38356 6.45708 6.56480 6.60399 6.62549 6.67496 6.71007 6.76511 6.85786 6.94180 7.08021 7.26786 7.32530 7.57244 7.72931 8.05873 8.10534 8.19112 8.69107 9.14352 9.78814 11.26995 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.008055 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.867168 B = 3475.360381 C = 4084.611031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.095 3.905 4 H 0.068 0.932 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.144 4.144 8 C -0.132 4.132 9 N -0.498 5.498 10 C 0.032 3.968 11 C 0.105 3.895 12 C 0.048 3.952 13 C -0.450 4.450 14 H 0.055 0.945 15 C 0.071 3.929 16 N -0.888 5.888 17 Si 0.879 3.121 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.277 1.277 21 C -0.222 4.222 22 C -0.148 4.148 23 H 0.087 0.913 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.015 0.985 38 H 0.067 0.933 39 H 0.002 0.998 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 2.609 -10.072 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.014 4.014 4 H 0.087 0.913 5 C -0.162 4.162 6 C -0.170 4.170 7 C -0.181 4.181 8 C -0.170 4.170 9 N -0.219 5.219 10 C -0.116 4.116 11 C -0.023 4.023 12 C 0.047 3.953 13 C -0.488 4.488 14 H 0.074 0.926 15 C -0.130 4.130 16 N -0.527 5.527 17 Si 0.708 3.292 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.202 1.202 21 C -0.260 4.260 22 C -0.186 4.186 23 H 0.106 0.894 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.033 0.967 38 H 0.085 0.915 39 H 0.020 0.980 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.296 2.355 -9.857 11.931 hybrid contribution -0.054 -0.047 -0.196 0.209 sum 6.242 2.309 -10.054 12.057 Atomic orbital electron populations 1.21664 0.95332 1.00792 1.02333 1.21435 0.96829 0.95342 1.00741 1.21778 0.90270 0.95743 0.93624 0.91344 1.23313 0.98320 0.96504 0.98025 1.22976 0.98217 0.96446 0.99347 1.22861 0.97342 0.97918 1.00004 1.22843 0.98069 0.97690 0.98380 1.61973 1.55969 1.02914 1.01067 1.22354 0.98089 0.89661 1.01527 1.21696 0.91269 0.98884 0.90437 1.18881 0.94257 0.95168 0.86953 1.20165 0.88347 0.99767 1.40548 0.92634 1.24830 0.97088 0.96379 0.94711 1.70012 1.35435 1.03754 1.43503 0.86810 0.87126 0.77711 0.77577 1.20623 1.21871 1.20241 1.23114 1.00749 0.92695 1.09393 1.22439 0.99711 0.94602 1.01816 0.89402 0.94596 0.94435 0.93320 0.91710 0.89064 0.90434 0.91973 0.90720 0.92080 0.91962 0.90382 0.93409 0.91050 0.96709 0.91475 0.98026 0.93580 0.92559 0.90857 0.89327 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.84 37.16 0.37 -2.27 16 2 C -0.11 -1.79 5.26 -26.73 -0.14 -1.93 16 3 C 0.10 1.55 1.62 -67.71 -0.11 1.44 16 4 H 0.07 1.08 7.71 -51.92 -0.40 0.68 16 5 C -0.14 -2.04 2.56 -89.81 -0.23 -2.27 16 6 C -0.13 -1.70 5.66 -25.83 -0.15 -1.85 16 7 C -0.14 -1.63 8.09 -25.83 -0.21 -1.84 16 8 C -0.13 -1.60 6.70 -25.92 -0.17 -1.78 16 9 N -0.50 -9.59 3.22 -234.88 -0.76 -10.35 16 10 C 0.03 0.57 8.79 60.07 0.53 1.09 16 11 C 0.10 2.23 3.66 -3.82 -0.01 2.22 16 12 C 0.05 1.15 1.14 -155.66 -0.18 0.98 16 13 C -0.45 -11.95 8.19 -34.44 -0.28 -12.23 16 14 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 15 C 0.07 1.92 5.41 -17.82 -0.10 1.82 16 16 N -0.89 -24.97 12.03 55.43 0.67 -24.31 16 17 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.22 -4.91 9.72 -26.73 -0.26 -5.17 16 22 C -0.15 -3.54 8.91 -26.73 -0.24 -3.78 16 23 H 0.09 1.93 7.55 -51.93 -0.39 1.54 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 27 H 0.06 1.24 6.41 -51.93 -0.33 0.91 16 28 H 0.09 1.48 6.35 -51.93 -0.33 1.15 16 29 H 0.08 0.97 7.99 -51.93 -0.41 0.55 16 30 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.05 0.76 7.94 -51.93 -0.41 0.34 16 36 H 0.07 1.38 7.43 -51.93 -0.39 1.00 16 37 H 0.01 0.24 5.70 -51.93 -0.30 -0.06 16 38 H 0.07 1.56 6.19 -51.93 -0.32 1.23 16 39 H 0.00 0.04 6.70 -51.93 -0.35 -0.31 16 40 H 0.25 6.97 8.32 -40.82 -0.34 6.63 16 41 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 42 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 43 H 0.09 2.32 7.74 -51.93 -0.40 1.92 16 44 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -26.86 333.61 -9.42 -36.29 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.16 Total: 2.49 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.18 Total: -25.57 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.09 Total: -34.65 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.86 -9.42 -36.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325820329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.130 kcal (2) G-P(sol) polarization free energy of solvation -26.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds