Wall clock time and date at job start Mon Mar 30 2020 07:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46998 * 2 1 4 4 H 1.09008 * 109.47337 * 302.86738 * 3 2 1 5 5 C 1.52995 * 109.47483 * 182.86315 * 3 2 1 6 6 C 1.53785 * 113.61646 * 159.13335 * 5 3 2 7 7 C 1.53955 * 87.01911 * 220.05190 * 6 5 3 8 8 C 1.53773 * 87.11308 * 25.36367 * 7 6 5 9 9 N 1.46903 * 109.47155 * 62.86256 * 3 2 1 10 10 C 1.46902 * 111.00206 * 194.87983 * 9 3 2 11 11 C 1.46903 * 110.99774 * 70.92972 * 9 3 2 12 12 C 1.53003 * 109.47051 * 195.81865 * 11 9 3 13 13 C 1.50696 * 115.55011 * 39.41142 * 12 11 9 14 14 H 1.08008 * 120.00140 * 272.30814 * 13 12 11 15 15 C 1.37877 * 120.00231 * 92.31507 * 13 12 11 16 16 N 1.31510 * 119.99531 * 4.17176 * 15 13 12 17 17 Si 1.86796 * 120.00117 * 184.17704 * 15 13 12 18 18 H 1.48506 * 109.47438 * 89.99603 * 17 15 13 19 19 H 1.48498 * 109.47081 * 209.99795 * 17 15 13 20 20 H 1.48502 * 109.46989 * 329.99630 * 17 15 13 21 21 C 1.53007 * 117.49714 * 253.70443 * 12 11 9 22 22 C 1.52996 * 117.49852 * 185.08388 * 12 11 9 23 23 H 1.08998 * 109.47394 * 304.84373 * 1 2 3 24 24 H 1.09004 * 109.46974 * 64.84801 * 1 2 3 25 25 H 1.08996 * 109.46504 * 184.84193 * 1 2 3 26 26 H 1.08996 * 109.47421 * 240.00039 * 2 1 3 27 27 H 1.09003 * 109.47257 * 119.99808 * 2 1 3 28 28 H 1.08998 * 112.85312 * 290.33650 * 5 3 2 29 29 H 1.08992 * 113.61750 * 334.57562 * 6 5 3 30 30 H 1.09001 * 113.60781 * 105.47399 * 6 5 3 31 31 H 1.09003 * 113.53452 * 270.81332 * 7 6 5 32 32 H 1.09003 * 113.74320 * 139.95070 * 7 6 5 33 33 H 1.09004 * 113.61550 * 220.08737 * 8 7 6 34 34 H 1.09004 * 113.61379 * 89.18528 * 8 7 6 35 35 H 1.09005 * 109.47025 * 52.96587 * 10 9 3 36 36 H 1.08999 * 109.47021 * 172.96150 * 10 9 3 37 37 H 1.08996 * 109.47316 * 292.96733 * 10 9 3 38 38 H 1.08995 * 109.47293 * 315.81643 * 11 9 3 39 39 H 1.08999 * 109.47191 * 75.81737 * 11 9 3 40 40 H 0.97009 * 119.99858 * 185.01108 * 16 15 13 41 41 H 1.09005 * 117.49799 * 359.97438 * 21 12 11 42 42 H 1.08998 * 117.49538 * 145.01626 * 21 12 11 43 43 H 1.08998 * 117.50119 * 214.97388 * 22 12 11 44 44 H 1.09003 * 117.49890 * 359.97360 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6353 1.9710 -0.8632 5 6 3.5683 1.4432 -0.0721 6 6 4.1604 2.7683 -0.5804 7 6 5.1708 1.9196 -1.3735 8 6 4.1250 0.7925 -1.3494 9 7 1.6076 2.1147 1.2325 10 6 1.7637 3.5711 1.1205 11 6 2.3352 1.5955 2.3984 12 6 1.6085 2.0105 3.6793 13 6 0.1037 1.9565 3.6194 14 1 -0.4537 2.8107 3.2642 15 6 -0.5617 0.8167 4.0183 16 7 0.1101 -0.1926 4.5277 17 14 -2.4174 0.7061 3.8350 18 1 -2.7504 0.1357 2.5049 19 1 -2.9688 -0.1687 4.9009 20 1 -3.0083 2.0633 3.9536 21 6 2.2431 3.1165 4.5249 22 6 2.2752 1.6667 5.0127 23 1 -0.3634 0.5871 0.8434 24 1 -0.3633 0.4368 -0.9303 25 1 -0.3632 -1.0240 0.0867 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 4.0353 1.0787 0.8428 29 1 3.4782 3.3379 -1.2114 30 1 4.6166 3.3720 0.2041 31 1 6.0770 1.6864 -0.8144 32 1 5.3770 2.3028 -2.3729 33 1 4.5527 -0.1965 -1.1848 34 1 3.4330 0.8209 -2.1911 35 1 1.2610 3.9221 0.2192 36 1 1.3222 4.0521 1.9933 37 1 2.8234 3.8199 1.0657 38 1 2.3814 0.5080 2.3430 39 1 3.3464 2.0023 2.4063 40 1 -0.3470 -1.0213 4.7408 41 1 3.1786 3.5482 4.1689 42 1 1.5722 3.8054 5.0379 43 1 1.6255 1.4019 5.8468 44 1 3.2314 1.1445 4.9774 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325820329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:38 Heat of formation + Delta-G solvation = 30.689537 kcal Electronic energy + Delta-G solvation = -20276.134142 eV Core-core repulsion = 17615.276547 eV Total energy + Delta-G solvation = -2660.857595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83699 -38.55117 -36.56260 -33.87031 -33.45979 -28.71543 -28.49507 -27.18544 -26.38600 -25.01456 -23.58750 -22.79511 -21.26251 -20.63580 -19.90255 -17.74580 -17.00508 -16.51049 -16.19531 -16.01635 -15.72612 -15.17234 -14.73832 -14.23005 -14.00548 -13.94014 -13.39551 -13.27360 -13.19783 -12.96042 -12.77208 -12.68135 -12.53407 -12.41470 -12.28005 -12.15644 -11.90892 -11.68541 -11.51271 -11.30514 -11.26871 -11.09623 -10.82771 -10.74099 -10.18890 -9.76162 -8.59832 -7.91809 -5.95946 1.44185 1.46752 1.52962 2.54052 3.28615 3.37313 3.63971 3.73289 3.85472 3.91024 4.03929 4.30325 4.40732 4.43756 4.52055 4.56433 4.65097 4.67540 4.77877 4.81355 4.85521 4.90322 4.92482 4.97129 5.04439 5.07578 5.09416 5.14106 5.15397 5.21381 5.26522 5.32670 5.37860 5.43746 5.50774 5.66210 5.74521 5.75717 5.81548 5.95248 6.48284 6.69669 6.73185 7.05079 7.66965 9.15903 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.008055 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.867168 B = 3475.360381 C = 4084.611031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C 0.099 3.901 4 H 0.083 0.917 5 C -0.147 4.147 6 C -0.130 4.130 7 C -0.134 4.134 8 C -0.126 4.126 9 N -0.518 5.518 10 C 0.038 3.962 11 C 0.126 3.874 12 C 0.029 3.971 13 C -0.450 4.450 14 H 0.044 0.956 15 C 0.030 3.970 16 N -0.914 5.914 17 Si 0.928 3.072 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.274 1.274 21 C -0.197 4.197 22 C -0.158 4.158 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.029 0.971 38 H 0.041 0.959 39 H 0.011 0.989 40 H 0.251 0.749 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.653 3.499 -12.289 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.010 4.010 4 H 0.101 0.899 5 C -0.167 4.167 6 C -0.167 4.167 7 C -0.171 4.171 8 C -0.164 4.164 9 N -0.240 5.240 10 C -0.111 4.111 11 C -0.002 4.002 12 C 0.028 3.972 13 C -0.489 4.489 14 H 0.062 0.938 15 C -0.168 4.168 16 N -0.554 5.554 17 Si 0.756 3.244 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.199 1.199 21 C -0.234 4.234 22 C -0.196 4.196 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.087 3.260 -12.083 14.382 hybrid contribution -0.315 -0.299 0.493 0.657 sum 6.772 2.961 -11.590 13.746 Atomic orbital electron populations 1.21585 0.96351 1.00070 1.01664 1.21409 0.95818 0.96088 1.00577 1.21794 0.91820 0.94880 0.92512 0.89929 1.23218 0.96537 0.98528 0.98403 1.22975 0.98661 0.95661 0.99429 1.22809 0.96806 0.96753 1.00738 1.22842 0.98345 0.98045 0.97152 1.61856 1.56485 1.04084 1.01599 1.22294 0.99041 0.88380 1.01343 1.21313 0.91473 0.97245 0.90212 1.19043 0.93450 0.96580 0.88134 1.20312 0.89920 0.99122 1.39512 0.93816 1.25346 1.00148 0.96354 0.94914 1.70118 1.36505 1.04015 1.44782 0.86031 0.83506 0.77544 0.77336 1.20358 1.22089 1.19940 1.23059 1.01327 0.91516 1.07538 1.22310 0.99666 0.96496 1.01095 0.93441 0.92307 0.94632 0.90518 0.94690 0.91279 0.89591 0.92614 0.90541 0.90249 0.91797 0.89220 0.91534 0.93339 0.95242 0.94075 0.97132 0.93978 0.90018 0.91230 0.92187 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.84 71.98 0.71 -4.30 16 2 C -0.10 -3.34 5.26 30.59 0.16 -3.18 16 3 C 0.10 3.05 1.62 44.91 0.07 3.12 16 4 H 0.08 2.35 7.71 -2.38 -0.02 2.33 16 5 C -0.15 -3.94 2.56 -10.27 -0.03 -3.97 16 6 C -0.13 -2.95 5.66 31.18 0.18 -2.77 16 7 C -0.13 -2.56 8.09 31.18 0.25 -2.31 16 8 C -0.13 -2.67 6.70 31.12 0.21 -2.46 16 9 N -0.52 -19.60 3.22 -897.03 -2.89 -22.49 16 10 C 0.04 1.26 8.79 127.69 1.12 2.38 16 11 C 0.13 5.37 3.66 86.30 0.32 5.69 16 12 C 0.03 1.39 1.14 -52.93 -0.06 1.32 16 13 C -0.45 -24.30 8.19 25.60 0.21 -24.09 16 14 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 15 C 0.03 1.68 5.41 84.66 0.46 2.13 16 16 N -0.91 -52.81 12.03 21.45 0.26 -52.55 16 17 Si 0.93 44.77 29.54 68.60 2.03 46.80 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 20 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 21 C -0.20 -8.59 9.72 30.60 0.30 -8.29 16 22 C -0.16 -7.66 8.91 30.59 0.27 -7.39 16 23 H 0.05 2.09 7.55 -2.39 -0.02 2.07 16 24 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 2.08 7.40 -2.39 -0.02 2.06 16 27 H 0.03 1.36 6.41 -2.39 -0.02 1.34 16 28 H 0.07 2.18 6.35 -2.39 -0.02 2.16 16 29 H 0.09 1.82 7.99 -2.39 -0.02 1.80 16 30 H 0.06 1.34 7.53 -2.39 -0.02 1.32 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.72 8.10 -2.38 -0.02 1.71 16 35 H 0.07 1.95 7.94 -2.38 -0.02 1.93 16 36 H 0.05 1.83 7.43 -2.39 -0.02 1.81 16 37 H 0.03 0.89 5.70 -2.39 -0.01 0.88 16 38 H 0.04 1.96 6.19 -2.39 -0.01 1.94 16 39 H 0.01 0.43 6.70 -2.39 -0.02 0.42 16 40 H 0.25 14.14 8.32 -92.70 -0.77 13.37 16 41 H 0.08 3.14 8.08 -2.38 -0.02 3.12 16 42 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.06 3.24 7.74 -2.39 -0.02 3.22 16 44 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -58.25 333.61 4.49 -53.76 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.93 Total: 18.59 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 4.17 Total: -44.11 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -2.63 Total: -75.04 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -58.25 4.49 -53.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325820329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.451 kcal (2) G-P(sol) polarization free energy of solvation -58.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds