Wall clock time and date at job start Mon Mar 30 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46937 * 2 1 4 4 H 1.08994 * 109.47161 * 54.89345 * 3 2 1 5 5 C 1.53001 * 109.47026 * 174.89303 * 3 2 1 6 6 C 1.53780 * 113.61577 * 37.49732 * 5 3 2 7 7 C 1.53774 * 87.08300 * 220.02150 * 6 5 3 8 8 C 1.53785 * 87.08482 * 25.43104 * 7 6 5 9 9 N 1.46900 * 109.47186 * 294.88965 * 3 2 1 10 10 C 1.46897 * 111.00224 * 294.15540 * 9 3 2 11 11 C 1.46903 * 110.99784 * 170.20257 * 9 3 2 12 12 C 1.53007 * 109.46971 * 199.48983 * 11 9 3 13 13 C 1.50699 * 115.55917 * 268.63091 * 12 11 9 14 14 H 1.07998 * 120.00162 * 141.94329 * 13 12 11 15 15 C 1.37882 * 119.99951 * 321.94140 * 13 12 11 16 16 N 1.31512 * 120.00039 * 348.15423 * 15 13 12 17 17 Si 1.86806 * 120.00048 * 168.15655 * 15 13 12 18 18 H 1.48497 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48489 * 109.47157 * 119.99943 * 17 15 13 20 20 H 1.48501 * 109.46783 * 240.00128 * 17 15 13 21 21 C 1.52998 * 117.50124 * 54.31353 * 12 11 9 22 22 C 1.53000 * 60.02861 * 107.47985 * 21 12 11 23 23 H 1.09002 * 109.47224 * 185.07218 * 1 2 3 24 24 H 1.09000 * 109.47403 * 305.07212 * 1 2 3 25 25 H 1.08998 * 109.47812 * 65.07551 * 1 2 3 26 26 H 1.09002 * 109.46897 * 240.00527 * 2 1 3 27 27 H 1.08995 * 109.47286 * 120.00583 * 2 1 3 28 28 H 1.09000 * 112.84870 * 168.80230 * 5 3 2 29 29 H 1.09001 * 113.61223 * 334.56970 * 6 5 3 30 30 H 1.08995 * 113.61820 * 105.46951 * 6 5 3 31 31 H 1.09006 * 113.61285 * 270.88616 * 7 6 5 32 32 H 1.09001 * 113.62012 * 139.98041 * 7 6 5 33 33 H 1.08994 * 113.61957 * 220.02456 * 8 7 6 34 34 H 1.08996 * 113.68911 * 89.12575 * 8 7 6 35 35 H 1.08992 * 109.47481 * 290.81181 * 10 9 3 36 36 H 1.09003 * 109.46712 * 50.81114 * 10 9 3 37 37 H 1.09004 * 109.46926 * 170.80535 * 10 9 3 38 38 H 1.08998 * 109.47101 * 79.49354 * 11 9 3 39 39 H 1.08998 * 109.47038 * 319.48143 * 11 9 3 40 40 H 0.96999 * 120.00361 * 185.01428 * 16 15 13 41 41 H 1.08987 * 117.50222 * 214.97902 * 21 12 11 42 42 H 1.09002 * 117.49496 * 359.97438 * 21 12 11 43 43 H 1.09001 * 117.50045 * 107.50419 * 22 21 12 44 44 H 1.09001 * 117.50374 * 252.52418 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6038 1.9820 0.8407 5 6 3.5645 1.4444 0.1284 6 6 4.2490 0.3024 -0.6410 7 6 5.1979 0.1663 0.5614 8 6 4.0751 0.7772 1.4165 9 7 1.6536 2.0985 -1.2563 10 6 2.3347 1.4826 -2.4029 11 6 1.9190 3.5422 -1.1997 12 6 1.0915 4.2553 -2.2711 13 6 1.7703 4.4345 -3.6045 14 1 1.2031 4.3300 -4.5176 15 6 3.1155 4.7321 -3.6589 16 7 3.7549 5.0881 -2.5662 17 14 4.0299 4.6297 -5.2846 18 1 3.0907 4.2087 -6.3551 19 1 4.5969 5.9609 -5.6183 20 1 5.1289 3.6374 -5.1727 21 6 -0.4192 4.0133 -2.2743 22 6 0.1381 5.3599 -1.8087 23 1 -0.3634 -1.0237 0.0909 24 1 -0.3634 0.5905 0.8411 25 1 -0.3635 0.4331 -0.9319 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.0039 2.4241 -0.0596 29 1 3.6090 -0.5669 -0.7927 30 1 4.7460 0.6279 -1.5548 31 1 6.0849 0.7960 0.4911 32 1 5.4304 -0.8668 0.8196 33 1 4.4317 1.4861 2.1636 34 1 3.3870 0.0388 1.8280 35 1 3.3985 1.7161 -2.3619 36 1 2.1984 0.4017 -2.3688 37 1 1.9124 1.8730 -3.3289 38 1 2.9787 3.7241 -1.3783 39 1 1.6454 3.9235 -0.2159 40 1 4.6824 5.3675 -2.6161 41 1 -0.9221 3.9838 -3.2408 42 1 -0.8236 3.3457 -1.5134 43 1 0.0019 6.2165 -2.4690 44 1 0.1008 5.5783 -0.7415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325820332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:42 Heat of formation + Delta-G solvation = 47.687914 kcal Electronic energy + Delta-G solvation = -20325.382255 eV Core-core repulsion = 17665.261765 eV Total energy + Delta-G solvation = -2660.120490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.73179 -36.89594 -34.90429 -32.20658 -31.92910 -27.49041 -26.65105 -25.56874 -25.01681 -23.60398 -22.54289 -20.95880 -19.90642 -18.74106 -18.02587 -16.12947 -15.65905 -15.23751 -14.85479 -14.68823 -13.74857 -13.71642 -13.24631 -12.69154 -12.60124 -12.46242 -12.15219 -12.04179 -11.58240 -11.18877 -11.11302 -10.98170 -10.86820 -10.75293 -10.65029 -10.52648 -10.39455 -10.15091 -10.11521 -10.06559 -9.78385 -9.61429 -9.14081 -8.80299 -8.57744 -8.03101 -7.07700 -5.98146 -4.02684 3.24327 3.34264 3.38533 4.37723 4.75116 4.92678 5.00876 5.05966 5.10608 5.23534 5.42391 5.55002 5.67915 5.78614 5.86165 5.96552 6.01224 6.05039 6.13072 6.13809 6.25117 6.27788 6.29210 6.33328 6.44084 6.59309 6.62132 6.67406 6.70887 6.77627 6.78588 6.87322 6.93877 7.03001 7.10331 7.21887 7.34423 7.53001 7.65489 8.00961 8.28729 8.30636 8.57137 8.93744 9.53846 10.98746 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.008829 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.303002 B = 3170.560944 C = 3994.845320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.094 3.906 4 H 0.069 0.931 5 C -0.136 4.136 6 C -0.137 4.137 7 C -0.144 4.144 8 C -0.137 4.137 9 N -0.524 5.524 10 C 0.034 3.966 11 C 0.079 3.921 12 C 0.063 3.937 13 C -0.476 4.476 14 H 0.058 0.942 15 C 0.070 3.930 16 N -0.879 5.879 17 Si 0.883 3.117 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.283 1.283 21 C -0.191 4.191 22 C -0.208 4.208 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.030 0.970 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -9.405 6.056 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.015 4.015 4 H 0.088 0.912 5 C -0.156 4.156 6 C -0.174 4.174 7 C -0.181 4.181 8 C -0.175 4.175 9 N -0.246 5.246 10 C -0.114 4.114 11 C -0.048 4.048 12 C 0.062 3.938 13 C -0.514 4.514 14 H 0.076 0.924 15 C -0.132 4.132 16 N -0.518 5.518 17 Si 0.711 3.289 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.228 4.228 22 C -0.247 4.247 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.229 -9.464 6.043 11.231 hybrid contribution 1.399 0.322 -0.678 1.588 sum 1.171 -9.142 5.365 10.665 Atomic orbital electron populations 1.21631 0.95729 0.99643 1.02754 1.21684 0.96204 0.96457 1.00942 1.21649 0.91318 0.94639 0.93939 0.91250 1.23210 0.97754 0.98815 0.95840 1.23152 0.98108 0.99135 0.97049 1.22813 0.97275 1.00182 0.97838 1.22947 0.98051 0.99851 0.96692 1.62172 1.56942 1.04681 1.00838 1.22416 0.96732 0.96847 0.95385 1.21998 1.03820 0.83796 0.95141 1.18869 0.86017 0.94149 0.94784 1.20653 0.93118 1.46780 0.90811 0.92411 1.24921 0.97411 0.94820 0.96020 1.69799 1.11325 1.43800 1.26863 0.86671 0.80026 0.77755 0.84474 1.19640 1.21133 1.20885 1.22643 1.00993 0.99002 1.00172 1.22995 1.11098 0.92632 0.97978 0.94357 0.93562 0.91328 0.91670 0.92721 0.88865 0.89781 0.91726 0.90759 0.92280 0.92248 0.90273 0.95771 0.94002 0.90580 0.88142 0.95183 0.93055 0.91586 0.90945 0.90994 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.74 37.16 0.36 -1.59 16 2 C -0.12 -1.63 4.25 -26.73 -0.11 -1.74 16 3 C 0.09 1.56 1.94 -67.71 -0.13 1.43 16 4 H 0.07 1.20 7.83 -51.93 -0.41 0.79 16 5 C -0.14 -2.18 2.90 -89.80 -0.26 -2.44 16 6 C -0.14 -2.01 5.32 -25.92 -0.14 -2.15 16 7 C -0.14 -1.86 8.08 -25.92 -0.21 -2.07 16 8 C -0.14 -1.83 7.46 -25.91 -0.19 -2.02 16 9 N -0.52 -10.27 3.96 -234.89 -0.93 -11.20 16 10 C 0.03 0.68 7.69 60.06 0.46 1.14 16 11 C 0.08 1.81 4.17 -3.82 -0.02 1.80 16 12 C 0.06 1.54 1.66 -155.62 -0.26 1.28 16 13 C -0.48 -12.67 7.64 -34.44 -0.26 -12.93 16 14 H 0.06 1.57 7.84 -52.49 -0.41 1.16 16 15 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 16 N -0.88 -23.77 10.79 55.43 0.60 -23.17 16 17 Si 0.88 20.63 29.56 -169.99 -5.02 15.61 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 C -0.19 -4.28 9.71 -26.73 -0.26 -4.54 16 22 C -0.21 -4.90 9.88 -26.70 -0.26 -5.16 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 26 H 0.06 0.93 4.49 -51.93 -0.23 0.70 16 27 H 0.05 0.69 6.29 -51.93 -0.33 0.36 16 28 H 0.09 1.79 6.99 -51.93 -0.36 1.42 16 29 H 0.08 1.15 5.49 -51.93 -0.29 0.87 16 30 H 0.06 1.04 7.05 -51.93 -0.37 0.67 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.97 6.33 -51.93 -0.33 0.64 16 35 H 0.02 0.50 5.60 -51.93 -0.29 0.21 16 36 H 0.04 0.72 5.69 -51.93 -0.30 0.42 16 37 H 0.08 1.69 6.75 -51.93 -0.35 1.34 16 38 H 0.10 2.56 4.14 -51.93 -0.21 2.34 16 39 H 0.03 0.69 7.47 -51.93 -0.39 0.30 16 40 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 41 H 0.07 1.47 8.14 -51.94 -0.42 1.05 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 44 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -25.97 322.60 -9.48 -35.45 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.61 Total: 5.71 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -1.37 Total: -27.25 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.33 Total: -34.38 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -25.97 -9.48 -35.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325820332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.138 kcal (2) G-P(sol) polarization free energy of solvation -25.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds