Wall clock time and date at job start Mon Mar 30 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46937 * 2 1 4 4 H 1.08994 * 109.47161 * 54.89345 * 3 2 1 5 5 C 1.53001 * 109.47026 * 174.89303 * 3 2 1 6 6 C 1.53780 * 113.61577 * 37.49732 * 5 3 2 7 7 C 1.53774 * 87.08300 * 220.02150 * 6 5 3 8 8 C 1.53785 * 87.08482 * 25.43104 * 7 6 5 9 9 N 1.46900 * 109.47186 * 294.88965 * 3 2 1 10 10 C 1.46897 * 111.00224 * 294.15540 * 9 3 2 11 11 C 1.46903 * 110.99784 * 170.20257 * 9 3 2 12 12 C 1.53007 * 109.46971 * 199.48983 * 11 9 3 13 13 C 1.50699 * 115.55917 * 268.63091 * 12 11 9 14 14 H 1.07998 * 120.00162 * 141.94329 * 13 12 11 15 15 C 1.37882 * 119.99951 * 321.94140 * 13 12 11 16 16 N 1.31512 * 120.00039 * 348.15423 * 15 13 12 17 17 Si 1.86806 * 120.00048 * 168.15655 * 15 13 12 18 18 H 1.48497 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48489 * 109.47157 * 119.99943 * 17 15 13 20 20 H 1.48501 * 109.46783 * 240.00128 * 17 15 13 21 21 C 1.52998 * 117.50124 * 54.31353 * 12 11 9 22 22 C 1.53000 * 60.02861 * 107.47985 * 21 12 11 23 23 H 1.09002 * 109.47224 * 185.07218 * 1 2 3 24 24 H 1.09000 * 109.47403 * 305.07212 * 1 2 3 25 25 H 1.08998 * 109.47812 * 65.07551 * 1 2 3 26 26 H 1.09002 * 109.46897 * 240.00527 * 2 1 3 27 27 H 1.08995 * 109.47286 * 120.00583 * 2 1 3 28 28 H 1.09000 * 112.84870 * 168.80230 * 5 3 2 29 29 H 1.09001 * 113.61223 * 334.56970 * 6 5 3 30 30 H 1.08995 * 113.61820 * 105.46951 * 6 5 3 31 31 H 1.09006 * 113.61285 * 270.88616 * 7 6 5 32 32 H 1.09001 * 113.62012 * 139.98041 * 7 6 5 33 33 H 1.08994 * 113.61957 * 220.02456 * 8 7 6 34 34 H 1.08996 * 113.68911 * 89.12575 * 8 7 6 35 35 H 1.08992 * 109.47481 * 290.81181 * 10 9 3 36 36 H 1.09003 * 109.46712 * 50.81114 * 10 9 3 37 37 H 1.09004 * 109.46926 * 170.80535 * 10 9 3 38 38 H 1.08998 * 109.47101 * 79.49354 * 11 9 3 39 39 H 1.08998 * 109.47038 * 319.48143 * 11 9 3 40 40 H 0.96999 * 120.00361 * 185.01428 * 16 15 13 41 41 H 1.08987 * 117.50222 * 214.97902 * 21 12 11 42 42 H 1.09002 * 117.49496 * 359.97438 * 21 12 11 43 43 H 1.09001 * 117.50045 * 107.50419 * 22 21 12 44 44 H 1.09001 * 117.50374 * 252.52418 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6038 1.9820 0.8407 5 6 3.5645 1.4444 0.1284 6 6 4.2490 0.3024 -0.6410 7 6 5.1979 0.1663 0.5614 8 6 4.0751 0.7772 1.4165 9 7 1.6536 2.0985 -1.2563 10 6 2.3347 1.4826 -2.4029 11 6 1.9190 3.5422 -1.1997 12 6 1.0915 4.2553 -2.2711 13 6 1.7703 4.4345 -3.6045 14 1 1.2031 4.3300 -4.5176 15 6 3.1155 4.7321 -3.6589 16 7 3.7549 5.0881 -2.5662 17 14 4.0299 4.6297 -5.2846 18 1 3.0907 4.2087 -6.3551 19 1 4.5969 5.9609 -5.6183 20 1 5.1289 3.6374 -5.1727 21 6 -0.4192 4.0133 -2.2743 22 6 0.1381 5.3599 -1.8087 23 1 -0.3634 -1.0237 0.0909 24 1 -0.3634 0.5905 0.8411 25 1 -0.3635 0.4331 -0.9319 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.0039 2.4241 -0.0596 29 1 3.6090 -0.5669 -0.7927 30 1 4.7460 0.6279 -1.5548 31 1 6.0849 0.7960 0.4911 32 1 5.4304 -0.8668 0.8196 33 1 4.4317 1.4861 2.1636 34 1 3.3870 0.0388 1.8280 35 1 3.3985 1.7161 -2.3619 36 1 2.1984 0.4017 -2.3688 37 1 1.9124 1.8730 -3.3289 38 1 2.9787 3.7241 -1.3783 39 1 1.6454 3.9235 -0.2159 40 1 4.6824 5.3675 -2.6161 41 1 -0.9221 3.9838 -3.2408 42 1 -0.8236 3.3457 -1.5134 43 1 0.0019 6.2165 -2.4690 44 1 0.1008 5.5783 -0.7415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325820332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:42 Heat of formation + Delta-G solvation = 35.650866 kcal Electronic energy + Delta-G solvation = -20325.904220 eV Core-core repulsion = 17665.261765 eV Total energy + Delta-G solvation = -2660.642456 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04044 -38.61796 -36.38233 -34.19411 -33.30600 -28.83465 -28.26175 -27.55072 -26.25248 -25.00098 -23.85498 -22.82621 -21.25123 -20.62104 -19.29837 -18.06821 -16.94040 -16.76248 -16.44346 -16.23758 -15.48990 -15.32927 -14.67907 -14.25373 -14.03200 -13.79124 -13.52449 -13.34827 -13.25587 -12.93971 -12.82595 -12.58747 -12.36936 -12.20099 -12.17048 -12.09130 -11.97942 -11.82788 -11.48026 -11.33567 -11.11677 -10.97861 -10.85630 -10.74223 -10.50479 -9.93778 -8.72913 -7.99170 -6.11346 1.35643 1.41036 1.50247 2.41039 3.03096 3.30152 3.75281 3.82097 3.86513 3.95289 4.02459 4.22863 4.37355 4.41199 4.50637 4.62952 4.72142 4.78858 4.83942 4.87375 4.90605 4.92870 4.95763 5.02014 5.05995 5.07614 5.14467 5.16915 5.20806 5.25394 5.26885 5.43703 5.46896 5.49184 5.52235 5.61745 5.64315 5.67483 5.70139 6.12402 6.48206 6.60169 6.69091 6.91082 7.46866 8.94020 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.008829 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.303002 B = 3170.560944 C = 3994.845320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.093 3.907 4 H 0.061 0.939 5 C -0.145 4.145 6 C -0.135 4.135 7 C -0.135 4.135 8 C -0.125 4.125 9 N -0.522 5.522 10 C 0.047 3.953 11 C 0.094 3.906 12 C 0.038 3.962 13 C -0.491 4.491 14 H 0.045 0.955 15 C 0.035 3.965 16 N -0.899 5.899 17 Si 0.936 3.064 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.280 1.280 21 C -0.169 4.169 22 C -0.212 4.212 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.007 0.993 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.020 0.980 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -11.566 6.857 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C -0.016 4.016 4 H 0.080 0.920 5 C -0.165 4.165 6 C -0.172 4.172 7 C -0.172 4.172 8 C -0.163 4.163 9 N -0.244 5.244 10 C -0.101 4.101 11 C -0.034 4.034 12 C 0.037 3.963 13 C -0.529 4.529 14 H 0.063 0.937 15 C -0.165 4.165 16 N -0.538 5.538 17 Si 0.762 3.238 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.206 1.206 21 C -0.206 4.206 22 C -0.251 4.251 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.025 0.975 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.371 -11.629 6.848 13.501 hybrid contribution 1.413 1.020 -0.906 1.964 sum 1.042 -10.609 5.942 12.204 Atomic orbital electron populations 1.21593 0.95409 1.00924 1.01534 1.21650 0.96388 0.94264 1.02175 1.21752 0.91853 0.96069 0.91925 0.92044 1.23097 0.97137 0.97565 0.98688 1.23156 0.98582 0.98811 0.96683 1.22765 0.96591 1.01523 0.96366 1.22927 0.98198 0.99825 0.95371 1.62130 1.56997 1.03008 1.02315 1.22249 0.95295 0.98260 0.94283 1.21660 1.01862 0.85932 0.93912 1.19014 0.87233 0.95379 0.94684 1.20781 0.93660 1.47196 0.91246 0.93666 1.25452 0.97907 0.94551 0.98582 1.69928 1.11361 1.44218 1.28255 0.85843 0.78904 0.77639 0.81386 1.19384 1.20946 1.20574 1.22580 0.99425 0.98205 1.00393 1.22989 1.11072 0.92683 0.98335 0.92033 0.93598 0.93545 0.91558 0.90165 0.92995 0.88129 0.93912 0.91462 0.89739 0.92190 0.88148 0.97478 0.91157 0.93367 0.90682 0.96099 0.93165 0.91508 0.89673 0.91835 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.74 71.98 0.70 -2.73 16 2 C -0.11 -2.70 4.25 30.59 0.13 -2.57 16 3 C 0.09 2.98 1.94 44.91 0.09 3.07 16 4 H 0.06 2.07 7.83 -2.39 -0.02 2.05 16 5 C -0.14 -4.56 2.90 -10.27 -0.03 -4.59 16 6 C -0.14 -3.76 5.32 31.12 0.17 -3.59 16 7 C -0.14 -3.18 8.08 31.12 0.25 -2.93 16 8 C -0.13 -3.04 7.46 31.12 0.23 -2.81 16 9 N -0.52 -20.48 3.96 -897.05 -3.56 -24.03 16 10 C 0.05 1.88 7.69 127.69 0.98 2.86 16 11 C 0.09 4.41 4.17 86.31 0.36 4.77 16 12 C 0.04 1.88 1.66 -52.90 -0.09 1.79 16 13 C -0.49 -26.69 7.64 25.60 0.20 -26.49 16 14 H 0.05 2.51 7.84 -2.91 -0.02 2.48 16 15 C 0.03 1.86 5.16 84.66 0.44 2.30 16 16 N -0.90 -49.87 10.79 21.45 0.23 -49.63 16 17 Si 0.94 42.97 29.56 68.60 2.03 45.00 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 C -0.17 -7.52 9.71 30.59 0.30 -7.23 16 22 C -0.21 -10.04 9.88 30.62 0.30 -9.74 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.36 7.90 -2.39 -0.02 1.35 16 26 H 0.07 1.67 4.49 -2.39 -0.01 1.66 16 27 H 0.08 1.66 6.29 -2.39 -0.02 1.64 16 28 H 0.05 2.07 6.99 -2.39 -0.02 2.06 16 29 H 0.10 2.45 5.49 -2.39 -0.01 2.44 16 30 H 0.04 1.37 7.05 -2.39 -0.02 1.35 16 31 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 2.03 6.33 -2.39 -0.02 2.02 16 35 H 0.01 0.29 5.60 -2.39 -0.01 0.28 16 36 H 0.07 2.34 5.69 -2.39 -0.01 2.32 16 37 H 0.05 2.17 6.75 -2.39 -0.02 2.15 16 38 H 0.08 3.98 4.14 -2.39 -0.01 3.97 16 39 H 0.02 0.98 7.47 -2.39 -0.02 0.96 16 40 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 41 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.07 3.07 8.03 -2.39 -0.02 3.06 16 Total: -1.00 -56.44 322.60 3.68 -52.75 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.96 Total: 23.79 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 4.02 Total: -47.87 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -3.32 Total: -73.67 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -56.44 3.68 -52.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325820332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.403 kcal (2) G-P(sol) polarization free energy of solvation -56.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds