Wall clock time and date at job start Mon Mar 30 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47123 * 2 1 4 4 C 1.52994 * 109.46720 * 184.53637 * 3 2 1 5 5 H 1.08995 * 109.47669 * 56.97241 * 4 3 2 6 6 N 1.46897 * 109.47479 * 296.96629 * 4 3 2 7 7 C 1.46894 * 111.00065 * 102.11202 * 6 4 3 8 8 H 1.09006 * 110.81723 * 324.04542 * 7 6 4 9 9 C 1.54887 * 110.75796 * 87.38236 * 7 6 4 10 10 C 1.54261 * 104.19712 * 156.25697 * 9 7 6 11 11 C 1.53874 * 106.60100 * 336.39174 * 10 9 7 12 12 H 1.08999 * 110.03437 * 119.28272 * 11 10 9 13 13 C 1.50707 * 110.03228 * 240.71461 * 11 10 9 14 14 H 1.08005 * 119.99628 * 118.54111 * 13 11 10 15 15 C 1.37874 * 119.99926 * 298.54473 * 13 11 10 16 16 N 1.31519 * 119.99695 * 179.97438 * 15 13 11 17 17 Si 1.86797 * 120.00139 * 0.02562 * 15 13 11 18 18 H 1.48495 * 109.47391 * 89.99876 * 17 15 13 19 19 H 1.48501 * 109.47109 * 209.99799 * 17 15 13 20 20 H 1.48499 * 109.46975 * 329.99899 * 17 15 13 21 21 C 1.54271 * 106.59612 * 359.97438 * 11 10 9 22 22 C 1.53005 * 109.46760 * 176.96696 * 4 3 2 23 23 C 1.53000 * 117.49898 * 254.03477 * 22 4 3 24 24 C 1.52995 * 60.00161 * 252.51107 * 23 22 4 25 25 H 1.09005 * 109.46637 * 60.00259 * 1 2 3 26 26 H 1.09000 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46822 * 300.00470 * 1 2 3 28 28 H 1.08997 * 109.46822 * 239.99530 * 2 1 3 29 29 H 1.09005 * 109.46637 * 119.99741 * 2 1 3 30 30 H 1.08998 * 109.47146 * 64.53389 * 3 2 1 31 31 H 1.08995 * 109.47002 * 304.53426 * 3 2 1 32 32 H 1.00895 * 111.00385 * 226.07030 * 6 4 3 33 33 H 1.08999 * 110.48383 * 37.57916 * 9 7 6 34 34 H 1.09000 * 110.48732 * 274.93902 * 9 7 6 35 35 H 1.09000 * 110.03668 * 95.67925 * 10 9 7 36 36 H 1.09000 * 110.03413 * 217.05752 * 10 9 7 37 37 H 0.97000 * 119.99477 * 179.97438 * 16 15 13 38 38 H 1.08991 * 110.48514 * 142.29015 * 21 11 10 39 39 H 1.09001 * 110.48081 * 264.93212 * 21 11 10 40 40 H 1.08996 * 115.55060 * 39.74589 * 22 4 3 41 41 H 1.08997 * 117.49646 * 0.02562 * 23 22 4 42 42 H 1.09003 * 117.49738 * 145.02385 * 23 22 4 43 43 H 1.08998 * 117.50224 * 252.51292 * 24 23 22 44 44 H 1.09006 * 117.49773 * 107.48683 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5658 1.4439 -0.1141 5 1 3.8633 0.9071 -1.0148 6 7 4.1455 0.7840 1.0633 7 6 4.5709 -0.5851 0.7433 8 1 3.8847 -1.0482 0.0342 9 6 6.0186 -0.5956 0.1930 10 6 6.5235 -2.0240 0.4837 11 6 5.6778 -2.5599 1.6521 12 1 5.1315 -3.4501 1.3402 13 6 6.5655 -2.8832 2.8263 14 1 6.4312 -2.3640 3.7638 15 6 7.5490 -3.8417 2.7036 16 7 8.3240 -4.1234 3.7282 17 14 7.7816 -4.7390 1.0819 18 1 8.7498 -3.9936 0.2381 19 1 8.3015 -6.1054 1.3424 20 1 6.4784 -4.8314 0.3760 21 6 4.6888 -1.4382 2.0310 22 6 4.0701 2.8864 -0.1902 23 6 4.5570 3.3938 -1.5490 24 6 5.5650 3.1001 -0.4362 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7446 1.9324 0.9278 31 1 1.6119 1.9792 -0.8465 32 1 4.9118 1.3223 1.4389 33 1 6.6308 0.1392 0.7158 34 1 6.0205 -0.4013 -0.8796 35 1 6.3879 -2.6542 -0.3952 36 1 7.5763 -1.9979 0.7651 37 1 9.0156 -4.7980 3.6420 38 1 3.7198 -1.8586 2.2996 39 1 5.0866 -0.8398 2.8507 40 1 3.5603 3.5976 0.4596 41 1 4.5177 2.7000 -2.3888 42 1 4.3675 4.4390 -1.7934 43 1 6.0386 3.9521 0.0517 44 1 6.1892 2.2130 -0.5437 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378852036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:57 Heat of formation + Delta-G solvation = -21.334471 kcal Electronic energy + Delta-G solvation = -19348.117724 eV Core-core repulsion = 16685.004198 eV Total energy + Delta-G solvation = -2663.113525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23246 -38.48625 -36.06385 -34.78997 -33.50488 -30.42157 -29.72668 -27.91227 -25.37627 -24.39358 -23.22093 -21.85072 -21.32919 -21.26382 -20.50542 -18.58341 -17.37945 -16.78484 -16.29867 -16.06786 -15.73365 -15.31382 -14.79940 -14.54506 -14.49742 -13.95131 -13.83333 -13.56740 -13.36926 -12.78630 -12.72287 -12.50075 -12.40511 -12.33438 -12.02751 -11.94981 -11.90873 -11.71982 -11.49632 -11.46599 -11.32289 -11.24486 -11.00363 -10.89473 -10.83854 -10.71192 -9.11953 -8.27783 -6.29934 1.31777 1.35027 1.45476 2.34881 2.82099 3.06968 3.36506 3.67798 3.94306 3.98566 4.03559 4.13336 4.20030 4.26872 4.34154 4.37649 4.47157 4.59223 4.64540 4.74990 4.79276 4.84965 4.90819 4.94379 4.98402 5.04209 5.07053 5.10250 5.10528 5.19669 5.24558 5.27110 5.30641 5.37878 5.42329 5.50157 5.58664 5.63544 5.65968 5.83344 6.31990 6.36625 6.61624 6.77463 7.34846 8.89330 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023225 B = 0.005701 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.300496 B = 4910.562872 C = 5540.286245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.094 4.094 4 C 0.118 3.882 5 H 0.047 0.953 6 N -0.675 5.675 7 C 0.098 3.902 8 H 0.087 0.913 9 C -0.134 4.134 10 C -0.129 4.129 11 C 0.003 3.997 12 H 0.023 0.977 13 C -0.510 4.510 14 H 0.029 0.971 15 C 0.009 3.991 16 N -0.955 5.955 17 Si 0.943 3.057 18 H -0.266 1.266 19 H -0.295 1.295 20 H -0.245 1.245 21 C -0.085 4.085 22 C -0.162 4.162 23 C -0.164 4.164 24 C -0.189 4.189 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.342 0.658 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.264 0.736 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 14.131 -13.647 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.132 4.132 4 C 0.008 3.992 5 H 0.065 0.935 6 N -0.305 5.305 7 C -0.012 4.012 8 H 0.105 0.895 9 C -0.173 4.173 10 C -0.168 4.168 11 C -0.016 4.016 12 H 0.041 0.959 13 C -0.548 4.548 14 H 0.048 0.952 15 C -0.187 4.187 16 N -0.596 5.596 17 Si 0.768 3.232 18 H -0.191 1.191 19 H -0.222 1.222 20 H -0.168 1.168 21 C -0.123 4.123 22 C -0.181 4.181 23 C -0.201 4.201 24 C -0.227 4.227 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.371 13.846 -13.331 22.858 hybrid contribution 1.592 -0.700 -0.400 1.784 sum -10.779 13.146 -13.732 21.853 Atomic orbital electron populations 1.21746 0.95383 1.01492 1.01867 1.21509 0.96047 0.97337 1.01236 1.21521 0.93417 0.96473 1.01807 1.21200 0.95302 0.91153 0.91500 0.93508 1.60572 1.37228 1.02133 1.30584 1.22548 0.93548 0.89314 0.95788 0.89484 1.22917 0.97732 0.96266 1.00424 1.22458 0.99593 0.96948 0.97755 1.19747 0.93819 0.94999 0.93039 0.95895 1.21454 1.15398 1.20165 0.97780 0.95246 1.25898 0.95330 0.97494 0.99986 1.70074 1.21911 1.34493 1.33092 0.85891 0.79854 0.77158 0.80338 1.19120 1.22207 1.16817 1.22128 0.97459 0.95740 0.97019 1.22592 0.96931 0.97478 1.01061 1.23021 1.02808 1.02643 0.91677 1.22992 0.92103 1.03490 1.04084 0.92099 0.93098 0.92838 0.93064 0.92791 0.92049 0.91042 0.83852 0.92174 0.91141 0.93104 0.94007 0.92745 0.92900 0.93647 0.87082 0.88822 0.87439 0.88050 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.98 16 2 C -0.12 -2.67 4.68 30.60 0.14 -2.53 16 3 C -0.09 -1.86 4.91 30.59 0.15 -1.71 16 4 C 0.12 2.51 2.30 44.92 0.10 2.61 16 5 H 0.05 1.05 7.36 -2.39 -0.02 1.03 16 6 N -0.68 -17.92 5.89 -462.87 -2.73 -20.64 16 7 C 0.10 3.05 2.17 46.22 0.10 3.15 16 8 H 0.09 2.58 6.43 -2.38 -0.02 2.57 16 9 C -0.13 -4.36 6.39 31.67 0.20 -4.16 16 10 C -0.13 -5.32 4.46 31.32 0.14 -5.18 16 11 C 0.00 0.15 2.40 -10.81 -0.03 0.13 16 12 H 0.02 1.09 7.22 -2.39 -0.02 1.07 16 13 C -0.51 -29.72 8.92 25.60 0.23 -29.50 16 14 H 0.03 1.91 7.80 -2.91 -0.02 1.88 16 15 C 0.01 0.54 5.33 84.65 0.45 0.99 16 16 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 17 Si 0.94 45.42 24.59 68.60 1.69 47.11 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.24 -10.90 6.44 99.48 0.64 -10.26 16 21 C -0.09 -3.40 6.03 31.68 0.19 -3.21 16 22 C -0.16 -2.95 5.01 -10.79 -0.05 -3.00 16 23 C -0.16 -2.57 10.18 30.59 0.31 -2.26 16 24 C -0.19 -3.48 9.72 30.59 0.30 -3.18 16 25 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.10 7.91 -2.39 -0.02 1.09 16 29 H 0.05 1.42 7.12 -2.38 -0.02 1.40 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.34 9.26 7.27 -89.70 -0.65 8.61 16 33 H 0.06 1.98 7.81 -2.39 -0.02 1.96 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.94 7.39 -2.39 -0.02 1.92 16 36 H 0.04 1.92 6.41 -2.39 -0.02 1.90 16 37 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.97 7.68 -2.39 -0.02 1.95 16 40 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -64.06 333.83 2.43 -61.63 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.22 Total: 22.52 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 2.95 Total: -49.83 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.43 Total: -81.43 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.69 Total: 47.11 kcal Total: -64.06 2.43 -61.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378852036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.297 kcal (2) G-P(sol) polarization free energy of solvation -64.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds