Wall clock time and date at job start Mon Mar 30 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46917 * 54.99769 * 4 3 2 6 6 N 1.46904 * 109.46913 * 295.00148 * 4 3 2 7 7 C 1.46905 * 110.99711 * 150.60367 * 6 4 3 8 8 H 1.09000 * 110.01794 * 34.16454 * 7 6 4 9 9 C 1.54266 * 110.02858 * 272.72566 * 7 6 4 10 10 C 1.54888 * 104.19675 * 217.10581 * 9 7 6 11 11 C 1.54893 * 102.74609 * 37.94133 * 10 9 7 12 12 H 1.09002 * 110.48367 * 80.74071 * 11 10 9 13 13 C 1.50709 * 110.59745 * 203.32389 * 11 10 9 14 14 H 1.07995 * 119.99505 * 114.84526 * 13 11 10 15 15 C 1.37874 * 119.99853 * 294.84208 * 13 11 10 16 16 N 1.31517 * 119.99563 * 180.02562 * 15 13 11 17 17 Si 1.86800 * 120.00424 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.46675 * 89.99966 * 17 15 13 19 19 H 1.48499 * 109.47383 * 209.99954 * 17 15 13 20 20 H 1.48499 * 109.47135 * 330.00365 * 17 15 13 21 21 C 1.53871 * 110.03281 * 155.56258 * 7 6 4 22 22 C 1.52998 * 109.47405 * 175.00283 * 4 3 2 23 23 C 1.52998 * 117.50088 * 133.62813 * 22 4 3 24 24 C 1.53002 * 117.49902 * 64.96946 * 22 4 3 25 25 H 1.08998 * 109.47499 * 60.00035 * 1 2 3 26 26 H 1.09004 * 109.46666 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47095 * 299.99548 * 1 2 3 28 28 H 1.09001 * 109.47468 * 240.00119 * 2 1 3 29 29 H 1.08998 * 109.47499 * 119.99965 * 2 1 3 30 30 H 1.08998 * 109.46920 * 300.00319 * 3 2 1 31 31 H 1.09004 * 109.46783 * 60.00261 * 3 2 1 32 32 H 1.00897 * 111.00170 * 274.55177 * 6 4 3 33 33 H 1.09002 * 110.49299 * 335.78557 * 9 7 6 34 34 H 1.09002 * 110.48617 * 98.43061 * 9 7 6 35 35 H 1.09005 * 110.75704 * 279.62881 * 10 9 7 36 36 H 1.09001 * 110.92177 * 156.33240 * 10 9 7 37 37 H 0.97000 * 120.00022 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.03346 * 238.56825 * 21 7 6 39 39 H 1.08999 * 110.03335 * 359.94584 * 21 7 6 40 40 H 1.09003 * 115.54754 * 279.30293 * 22 4 3 41 41 H 1.08997 * 117.50107 * 0.02562 * 23 22 4 42 42 H 1.09007 * 117.49530 * 145.02025 * 23 22 4 43 43 H 1.08994 * 117.49836 * 214.98367 * 24 22 4 44 44 H 1.09005 * 117.49720 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 7 4.0601 0.8571 1.2543 7 6 5.3621 0.2056 1.0580 8 1 5.9444 0.7516 0.3157 9 6 5.1591 -1.2542 0.6024 10 6 6.2919 -2.0351 1.3138 11 6 6.3650 -1.3454 2.6987 12 1 5.5844 -1.7274 3.3567 13 6 7.7228 -1.5473 3.3207 14 1 8.3712 -0.7001 3.4884 15 6 8.1371 -2.8136 3.6754 16 7 9.3219 -2.9897 4.2186 17 14 7.0152 -4.2789 3.3860 18 1 7.2744 -4.8416 2.0364 19 1 7.2809 -5.3166 4.4144 20 1 5.5985 -3.8431 3.4768 21 6 6.1288 0.1476 2.3909 22 6 4.0799 2.8796 -0.1263 23 6 5.1986 3.3177 0.8210 24 6 3.7744 3.8408 1.0243 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6765 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 4.1104 1.5533 1.9828 33 1 4.1838 -1.6215 0.9218 34 1 5.2622 -1.3339 -0.4798 35 1 7.2340 -1.9239 0.7767 36 1 6.0315 -3.0882 1.4199 37 1 9.6136 -3.8806 4.4679 38 1 7.0835 0.6647 2.2953 39 1 5.5352 0.6036 3.1832 40 1 4.0862 3.2896 -1.1363 41 1 5.5716 2.5820 1.5336 42 1 5.9408 4.0161 0.4344 43 1 3.5803 4.8830 0.7713 44 1 3.2098 3.4494 1.8706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378852040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:02 Heat of formation + Delta-G solvation = 1.967643 kcal Electronic energy + Delta-G solvation = -19434.962016 eV Core-core repulsion = 16772.858947 eV Total energy + Delta-G solvation = -2662.103070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.49611 -37.00421 -34.84667 -33.06745 -31.78042 -29.15480 -28.36623 -26.24586 -24.15357 -23.31538 -22.44802 -20.98679 -19.88624 -19.22815 -19.00939 -16.86515 -16.39357 -15.63962 -14.90835 -14.67097 -14.48472 -14.08666 -13.38992 -13.18689 -13.09494 -12.59635 -12.53632 -12.33744 -11.85969 -11.62851 -11.58593 -11.37176 -11.12779 -10.87410 -10.73692 -10.54846 -10.47696 -10.33384 -10.25276 -10.18282 -9.85354 -9.73355 -9.59742 -9.33751 -8.92136 -8.48183 -8.08220 -6.01783 -3.99775 3.33866 3.42644 3.46404 3.73000 4.38411 4.48347 4.65253 4.85049 4.88401 5.03852 5.17335 5.24374 5.26872 5.33120 5.47885 5.52289 5.59452 5.60672 5.74860 5.80468 5.84944 5.90412 5.96482 6.00152 6.06142 6.07465 6.17581 6.19751 6.34017 6.39871 6.43456 6.51586 6.58094 6.72781 6.73942 6.97153 6.98276 7.21155 7.49628 7.59041 7.74858 7.86191 8.59112 9.02111 9.62136 11.11701 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024118 B = 0.005888 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.703399 B = 4754.355831 C = 5618.755614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.098 4.098 4 C 0.114 3.886 5 H 0.078 0.922 6 N -0.676 5.676 7 C 0.083 3.917 8 H 0.041 0.959 9 C -0.111 4.111 10 C -0.128 4.128 11 C 0.017 3.983 12 H 0.032 0.968 13 C -0.509 4.509 14 H 0.071 0.929 15 C 0.069 3.931 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.263 1.263 21 C -0.107 4.107 22 C -0.180 4.180 23 C -0.188 4.188 24 C -0.179 4.179 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.338 0.662 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.431 10.033 -9.595 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.136 4.136 4 C 0.003 3.997 5 H 0.096 0.904 6 N -0.309 5.309 7 C -0.026 4.026 8 H 0.059 0.941 9 C -0.149 4.149 10 C -0.167 4.167 11 C -0.002 4.002 12 H 0.050 0.950 13 C -0.547 4.547 14 H 0.089 0.911 15 C -0.131 4.131 16 N -0.544 5.544 17 Si 0.710 3.290 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.188 1.188 21 C -0.145 4.145 22 C -0.200 4.200 23 C -0.225 4.225 24 C -0.216 4.216 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.662 9.320 -9.578 19.838 hybrid contribution 0.203 -0.013 -0.310 0.371 sum -14.459 9.307 -9.888 19.835 Atomic orbital electron populations 1.21786 0.96829 1.01140 1.01108 1.21445 0.94449 0.96918 1.02822 1.21486 0.94001 0.96957 1.01145 1.21213 0.94868 0.90174 0.93428 0.90362 1.60833 1.28687 1.34455 1.06889 1.22289 0.87724 0.94812 0.97801 0.94056 1.22411 0.99830 0.94629 0.98019 1.22880 0.96968 0.97712 0.99096 1.19875 0.97380 0.90688 0.92290 0.94990 1.21123 0.99569 0.94525 1.39442 0.91061 1.24996 0.94788 0.98854 0.94507 1.69913 1.19103 1.22559 1.42846 0.86888 0.82121 0.82527 0.77494 1.20486 1.22277 1.18814 1.22290 0.98274 0.99971 0.93978 1.23113 1.03662 0.97492 0.95734 1.23213 0.91822 1.04006 1.03507 1.22908 0.99056 0.98910 1.00722 0.93450 0.93154 0.93051 0.92831 0.90349 0.92604 0.92130 0.84134 0.91392 0.93731 0.91800 0.93744 0.92811 0.92110 0.92977 0.88206 0.87725 0.89019 0.89160 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.15 0.37 -1.10 16 2 C -0.12 -1.33 5.82 -26.73 -0.16 -1.48 16 3 C -0.10 -1.04 4.72 -26.73 -0.13 -1.16 16 4 C 0.11 1.34 2.26 -67.71 -0.15 1.19 16 5 H 0.08 1.00 7.71 -51.93 -0.40 0.59 16 6 N -0.68 -9.32 5.28 -98.57 -0.52 -9.84 16 7 C 0.08 1.35 1.89 -66.59 -0.13 1.23 16 8 H 0.04 0.67 7.28 -51.93 -0.38 0.29 16 9 C -0.11 -1.94 6.39 -25.07 -0.16 -2.10 16 10 C -0.13 -2.76 5.31 -24.74 -0.13 -2.89 16 11 C 0.02 0.39 2.27 -90.11 -0.20 0.19 16 12 H 0.03 0.79 7.06 -51.93 -0.37 0.42 16 13 C -0.51 -14.31 9.05 -34.44 -0.31 -14.62 16 14 H 0.07 2.16 7.79 -52.49 -0.41 1.76 16 15 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 16 N -0.91 -28.02 13.96 55.43 0.77 -27.24 16 17 Si 0.88 22.17 24.65 -169.99 -4.19 17.98 16 18 H -0.28 -6.86 7.10 56.52 0.40 -6.45 16 19 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.26 -6.39 6.47 56.52 0.37 -6.03 16 21 C -0.11 -2.08 5.39 -25.62 -0.14 -2.22 16 22 C -0.18 -1.95 5.76 -90.62 -0.52 -2.47 16 23 C -0.19 -2.16 9.08 -26.70 -0.24 -2.40 16 24 C -0.18 -1.80 9.45 -26.69 -0.25 -2.06 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 32 H 0.34 4.55 5.08 -39.29 -0.20 4.35 16 33 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.42 8.05 -51.93 -0.42 1.00 16 36 H 0.04 0.98 5.27 -51.93 -0.27 0.70 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 39 H 0.05 0.96 7.48 -51.93 -0.39 0.57 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.36 4.83 -51.93 -0.25 1.11 16 42 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 0.97 7.37 -51.93 -0.38 0.59 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -28.96 328.13 -9.31 -38.28 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.07 Total: 3.85 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -2.25 Total: -27.97 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.25 Total: -37.08 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.19 Total: 17.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.96 -9.31 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378852040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.243 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds