Wall clock time and date at job start Mon Mar 30 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47405 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46917 * 54.99769 * 4 3 2 6 6 N 1.46904 * 109.46913 * 295.00148 * 4 3 2 7 7 C 1.46905 * 110.99711 * 150.60367 * 6 4 3 8 8 H 1.09000 * 110.01794 * 34.16454 * 7 6 4 9 9 C 1.54266 * 110.02858 * 272.72566 * 7 6 4 10 10 C 1.54888 * 104.19675 * 217.10581 * 9 7 6 11 11 C 1.54893 * 102.74609 * 37.94133 * 10 9 7 12 12 H 1.09002 * 110.48367 * 80.74071 * 11 10 9 13 13 C 1.50709 * 110.59745 * 203.32389 * 11 10 9 14 14 H 1.07995 * 119.99505 * 114.84526 * 13 11 10 15 15 C 1.37874 * 119.99853 * 294.84208 * 13 11 10 16 16 N 1.31517 * 119.99563 * 180.02562 * 15 13 11 17 17 Si 1.86800 * 120.00424 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.46675 * 89.99966 * 17 15 13 19 19 H 1.48499 * 109.47383 * 209.99954 * 17 15 13 20 20 H 1.48499 * 109.47135 * 330.00365 * 17 15 13 21 21 C 1.53871 * 110.03281 * 155.56258 * 7 6 4 22 22 C 1.52998 * 109.47405 * 175.00283 * 4 3 2 23 23 C 1.52998 * 117.50088 * 133.62813 * 22 4 3 24 24 C 1.53002 * 117.49902 * 64.96946 * 22 4 3 25 25 H 1.08998 * 109.47499 * 60.00035 * 1 2 3 26 26 H 1.09004 * 109.46666 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47095 * 299.99548 * 1 2 3 28 28 H 1.09001 * 109.47468 * 240.00119 * 2 1 3 29 29 H 1.08998 * 109.47499 * 119.99965 * 2 1 3 30 30 H 1.08998 * 109.46920 * 300.00319 * 3 2 1 31 31 H 1.09004 * 109.46783 * 60.00261 * 3 2 1 32 32 H 1.00897 * 111.00170 * 274.55177 * 6 4 3 33 33 H 1.09002 * 110.49299 * 335.78557 * 9 7 6 34 34 H 1.09002 * 110.48617 * 98.43061 * 9 7 6 35 35 H 1.09005 * 110.75704 * 279.62881 * 10 9 7 36 36 H 1.09001 * 110.92177 * 156.33240 * 10 9 7 37 37 H 0.97000 * 120.00022 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.03346 * 238.56825 * 21 7 6 39 39 H 1.08999 * 110.03335 * 359.94584 * 21 7 6 40 40 H 1.09003 * 115.54754 * 279.30293 * 22 4 3 41 41 H 1.08997 * 117.50107 * 0.02562 * 23 22 4 42 42 H 1.09007 * 117.49530 * 145.02025 * 23 22 4 43 43 H 1.08994 * 117.49836 * 214.98367 * 24 22 4 44 44 H 1.09005 * 117.49720 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 7 4.0601 0.8571 1.2543 7 6 5.3621 0.2056 1.0580 8 1 5.9444 0.7516 0.3157 9 6 5.1591 -1.2542 0.6024 10 6 6.2919 -2.0351 1.3138 11 6 6.3650 -1.3454 2.6987 12 1 5.5844 -1.7274 3.3567 13 6 7.7228 -1.5473 3.3207 14 1 8.3712 -0.7001 3.4884 15 6 8.1371 -2.8136 3.6754 16 7 9.3219 -2.9897 4.2186 17 14 7.0152 -4.2789 3.3860 18 1 7.2744 -4.8416 2.0364 19 1 7.2809 -5.3166 4.4144 20 1 5.5985 -3.8431 3.4768 21 6 6.1288 0.1476 2.3909 22 6 4.0799 2.8796 -0.1263 23 6 5.1986 3.3177 0.8210 24 6 3.7744 3.8408 1.0243 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6765 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 4.1104 1.5533 1.9828 33 1 4.1838 -1.6215 0.9218 34 1 5.2622 -1.3339 -0.4798 35 1 7.2340 -1.9239 0.7767 36 1 6.0315 -3.0882 1.4199 37 1 9.6136 -3.8806 4.4679 38 1 7.0835 0.6647 2.2953 39 1 5.5352 0.6036 3.1832 40 1 4.0862 3.2896 -1.1363 41 1 5.5716 2.5820 1.5336 42 1 5.9408 4.0161 0.4344 43 1 3.5803 4.8830 0.7713 44 1 3.2098 3.4494 1.8706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378852040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:02 Heat of formation + Delta-G solvation = -14.097571 kcal Electronic energy + Delta-G solvation = -19435.658656 eV Core-core repulsion = 16772.858947 eV Total energy + Delta-G solvation = -2662.799710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58428 -38.43794 -35.70378 -34.82025 -33.38424 -30.36399 -30.00801 -27.69444 -25.24676 -24.95522 -23.29223 -21.87157 -21.37830 -20.59569 -20.27182 -18.95369 -17.40644 -16.84641 -16.58976 -15.80938 -15.62295 -15.35615 -14.85036 -14.71714 -14.39394 -14.13929 -13.86373 -13.41741 -13.12478 -12.85864 -12.72687 -12.51858 -12.44977 -12.25468 -12.03263 -11.92317 -11.78630 -11.59047 -11.48472 -11.37934 -11.32470 -11.17480 -11.10599 -10.98440 -10.71522 -10.65772 -9.21623 -8.28261 -6.30524 1.32727 1.36237 1.47411 2.35426 2.89360 3.07500 3.29163 3.77033 3.91159 3.93454 4.00626 4.04845 4.22625 4.32720 4.36391 4.45155 4.54680 4.65212 4.72868 4.78031 4.79072 4.82096 4.95659 4.97872 5.00868 5.02633 5.07235 5.13458 5.17383 5.19987 5.21808 5.25205 5.29403 5.38422 5.44624 5.48929 5.59615 5.67326 5.70674 5.79957 6.31683 6.35301 6.58488 6.76347 7.34986 8.88894 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024118 B = 0.005888 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.703399 B = 4754.355831 C = 5618.755614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.091 4.091 4 C 0.114 3.886 5 H 0.074 0.926 6 N -0.675 5.675 7 C 0.099 3.901 8 H 0.045 0.955 9 C -0.100 4.100 10 C -0.128 4.128 11 C 0.010 3.990 12 H 0.025 0.975 13 C -0.513 4.513 14 H 0.031 0.969 15 C 0.012 3.988 16 N -0.954 5.954 17 Si 0.943 3.057 18 H -0.266 1.266 19 H -0.295 1.295 20 H -0.247 1.247 21 C -0.101 4.101 22 C -0.177 4.177 23 C -0.204 4.204 24 C -0.166 4.166 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.341 0.659 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.264 0.736 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.169 10.496 -11.326 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.129 4.129 4 C 0.004 3.996 5 H 0.092 0.908 6 N -0.308 5.308 7 C -0.010 4.010 8 H 0.063 0.937 9 C -0.138 4.138 10 C -0.166 4.166 11 C -0.009 4.009 12 H 0.043 0.957 13 C -0.551 4.551 14 H 0.049 0.951 15 C -0.185 4.185 16 N -0.595 5.595 17 Si 0.769 3.231 18 H -0.191 1.191 19 H -0.222 1.222 20 H -0.171 1.171 21 C -0.139 4.139 22 C -0.197 4.197 23 C -0.241 4.241 24 C -0.203 4.203 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.130 0.870 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.421 9.805 -11.321 22.974 hybrid contribution 1.118 -0.066 0.270 1.152 sum -16.303 9.739 -11.051 21.972 Atomic orbital electron populations 1.21756 0.95718 1.01407 1.01713 1.21408 0.95459 0.96983 1.01677 1.21434 0.92790 0.96762 1.01885 1.21259 0.95706 0.90599 0.92026 0.90801 1.60793 1.26764 1.35043 1.08153 1.21993 0.88656 0.94777 0.95623 0.93673 1.22332 0.98223 0.94286 0.98953 1.22765 0.98082 0.97876 0.97928 1.19856 0.94113 0.93819 0.93065 0.95677 1.21453 1.01178 0.93312 1.39161 0.95093 1.25852 0.96190 1.02030 0.94386 1.70061 1.21302 1.23394 1.44752 0.85882 0.80781 0.78667 0.77820 1.19141 1.22247 1.17074 1.22158 0.98310 0.97068 0.96324 1.23100 1.03021 0.97062 0.96499 1.23179 0.92759 1.04266 1.03897 1.22959 0.97522 0.99592 1.00214 0.92321 0.93126 0.92955 0.92973 0.92446 0.91038 0.92117 0.83820 0.90866 0.91504 0.93106 0.94049 0.92693 0.93750 0.92181 0.86966 0.89606 0.88649 0.87641 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.12 -2.32 5.82 30.59 0.18 -2.14 16 3 C -0.09 -1.64 4.72 30.60 0.14 -1.50 16 4 C 0.11 2.38 2.26 44.91 0.10 2.48 16 5 H 0.07 1.64 7.71 -2.39 -0.02 1.63 16 6 N -0.67 -17.20 5.28 -465.76 -2.46 -19.66 16 7 C 0.10 3.08 1.89 45.64 0.09 3.17 16 8 H 0.05 1.39 7.28 -2.39 -0.02 1.38 16 9 C -0.10 -3.27 6.39 31.67 0.20 -3.06 16 10 C -0.13 -5.36 5.31 31.89 0.17 -5.19 16 11 C 0.01 0.49 2.27 -10.46 -0.02 0.47 16 12 H 0.03 1.21 7.06 -2.39 -0.02 1.20 16 13 C -0.51 -29.81 9.05 25.60 0.23 -29.58 16 14 H 0.03 1.98 7.79 -2.91 -0.02 1.96 16 15 C 0.01 0.70 5.46 84.65 0.46 1.17 16 16 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 17 Si 0.94 45.85 24.65 68.60 1.69 47.54 16 18 H -0.27 -12.34 7.10 99.48 0.71 -11.63 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.25 -11.25 6.47 99.48 0.64 -10.61 16 21 C -0.10 -3.89 5.39 31.31 0.17 -3.73 16 22 C -0.18 -3.34 5.76 -10.79 -0.06 -3.40 16 23 C -0.20 -4.33 9.08 30.62 0.28 -4.05 16 24 C -0.17 -2.90 9.45 30.62 0.29 -2.61 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.38 7.75 -2.39 -0.02 1.36 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.12 7.82 -2.38 -0.02 1.10 16 32 H 0.34 8.57 5.08 -89.70 -0.46 8.12 16 33 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 2.23 8.05 -2.38 -0.02 2.21 16 36 H 0.04 1.74 5.27 -2.39 -0.01 1.73 16 37 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.04 1.84 7.66 -2.39 -0.02 1.82 16 39 H 0.06 2.19 7.48 -2.39 -0.02 2.17 16 40 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.09 2.16 4.83 -2.39 -0.01 2.15 16 42 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.10 1.69 7.37 -2.38 -0.02 1.67 16 Total: -1.00 -63.54 328.13 2.90 -60.64 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.43 Total: 21.86 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 2.94 Total: -49.75 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.16 Total: -80.29 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.69 Total: 47.54 kcal Total: -63.54 2.90 -60.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378852040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.543 kcal (2) G-P(sol) polarization free energy of solvation -63.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds