Wall clock time and date at job start Mon Mar 30 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 H 1.08998 * 110.66913 * 56.78122 * 3 2 1 5 5 C 1.54888 * 110.75521 * 293.54625 * 3 2 1 6 6 C 1.54272 * 104.19695 * 203.55668 * 5 3 2 7 7 C 1.53878 * 106.59329 * 23.61082 * 6 5 3 8 8 H 1.09001 * 110.03052 * 240.66493 * 7 6 5 9 9 N 1.46900 * 110.03009 * 119.28709 * 7 6 5 10 10 C 1.46903 * 111.00108 * 87.08854 * 9 7 6 11 11 H 1.08997 * 110.43499 * 323.91504 * 10 9 7 12 12 C 1.54266 * 110.48559 * 86.45463 * 10 9 7 13 13 C 1.53869 * 106.60029 * 142.29005 * 12 10 9 14 14 C 1.54266 * 106.60080 * 359.97438 * 13 12 10 15 15 H 1.08991 * 110.48773 * 95.06564 * 14 13 12 16 16 C 1.50700 * 110.48800 * 217.71872 * 14 13 12 17 17 H 1.07996 * 120.00624 * 114.77598 * 16 14 13 18 18 C 1.37883 * 119.99486 * 294.76860 * 16 14 13 19 19 N 1.31512 * 119.99716 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99749 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47081 * 59.99982 * 20 18 16 22 22 H 1.48496 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46896 * 300.00143 * 20 18 16 24 24 C 1.54891 * 110.48521 * 201.22692 * 10 9 7 25 25 C 1.54259 * 106.64415 * 359.97438 * 7 6 5 26 26 H 1.09000 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47155 * 299.99900 * 1 2 3 28 28 H 1.09004 * 109.47407 * 60.00087 * 1 2 3 29 29 H 1.09001 * 109.47415 * 240.00487 * 2 1 3 30 30 H 1.08996 * 109.47188 * 120.00189 * 2 1 3 31 31 H 1.09001 * 110.48355 * 84.88279 * 5 3 2 32 32 H 1.09000 * 110.48987 * 322.23370 * 5 3 2 33 33 H 1.09001 * 110.02973 * 264.33126 * 6 5 3 34 34 H 1.08994 * 110.07390 * 142.91594 * 6 5 3 35 35 H 1.00899 * 110.99857 * 323.13369 * 9 7 6 36 36 H 1.09000 * 110.03049 * 261.57663 * 12 10 9 37 37 H 1.09001 * 110.03650 * 23.00146 * 12 10 9 38 38 H 1.08999 * 110.03445 * 119.28652 * 13 12 10 39 39 H 1.09009 * 110.03169 * 240.71589 * 13 12 10 40 40 H 0.97008 * 119.99139 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.75776 * 321.69512 * 24 10 9 42 42 H 1.08996 * 110.75513 * 84.88663 * 24 10 9 43 43 H 1.09000 * 110.48553 * 95.09214 * 25 7 6 44 44 H 1.09000 * 110.48754 * 217.73615 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6415 1.9915 0.8532 5 6 1.6774 2.1529 -1.3278 6 6 2.7158 3.2877 -1.4455 7 6 3.9308 2.8608 -0.6033 8 1 4.1046 3.5831 0.1943 9 7 5.1225 2.7568 -1.4559 10 6 5.8029 4.0537 -1.5701 11 1 5.0750 4.8646 -1.5938 12 6 6.7914 4.2496 -0.4020 13 6 8.0237 4.9638 -0.9840 14 6 7.7415 5.1766 -2.4857 15 1 7.3278 6.1699 -2.6591 16 6 8.9994 4.9794 -3.2919 17 1 9.0691 4.1604 -3.9924 18 6 10.0613 5.8448 -3.1352 19 7 9.9765 6.8419 -2.2819 20 14 11.6202 5.6009 -4.1350 21 1 11.2985 5.6860 -5.5822 22 1 12.6041 6.6561 -3.7832 23 1 12.1976 4.2662 -3.8339 24 6 6.6974 4.0872 -2.8342 25 6 3.5891 1.4818 -0.0022 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.6686 2.5626 -1.2781 32 1 1.7693 1.4632 -2.1669 33 1 2.2994 4.2167 -1.0560 34 1 3.0106 3.4185 -2.4867 35 1 4.8852 2.3916 -2.3660 36 1 6.3353 4.8644 0.3739 37 1 7.0800 3.2822 0.0091 38 1 8.1658 5.9253 -0.4905 39 1 8.9105 4.3430 -0.8554 40 1 10.7238 7.4505 -2.1715 41 1 7.1823 3.1235 -2.9899 42 1 6.1161 4.3716 -3.7113 43 1 3.9899 0.6835 -0.6268 44 1 3.9750 1.4025 1.0142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378855924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:16 Heat of formation + Delta-G solvation = -42.872883 kcal Electronic energy + Delta-G solvation = -18807.051513 eV Core-core repulsion = 16143.004012 eV Total energy + Delta-G solvation = -2664.047501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.11392 -37.19973 -34.36442 -32.49757 -31.10496 -28.72165 -28.02047 -27.20062 -25.13903 -23.45382 -22.83675 -20.21501 -19.92802 -19.25485 -18.62370 -16.43001 -15.92503 -15.28896 -14.86707 -14.61560 -14.37282 -14.14781 -13.55837 -13.26299 -12.98455 -12.65512 -12.27589 -12.16714 -11.89756 -11.77161 -11.28856 -11.23994 -10.96910 -10.82795 -10.70241 -10.63742 -10.56204 -10.51545 -10.38218 -10.21723 -9.96096 -9.85196 -9.46032 -9.02059 -8.65952 -8.31280 -7.95453 -5.94719 -3.96840 3.35928 3.40336 3.43086 4.33730 4.49410 4.56871 4.63529 4.86828 5.05275 5.11761 5.16725 5.36963 5.46180 5.48853 5.55525 5.60070 5.63439 5.72105 5.75163 5.79121 5.80431 5.92026 5.98256 6.03396 6.05182 6.07759 6.17062 6.32561 6.38542 6.46577 6.62893 6.72367 6.86838 6.93532 7.06835 7.27968 7.43303 7.65635 7.76646 7.84467 7.98655 8.09588 8.53938 9.05978 9.66570 11.15240 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.057434 B = 0.003636 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.399034 B = 7698.070670 C = 7769.777443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.096 4.096 4 H 0.072 0.928 5 C -0.114 4.114 6 C -0.155 4.155 7 C 0.084 3.916 8 H 0.075 0.925 9 N -0.677 5.677 10 C 0.080 3.920 11 H 0.037 0.963 12 C -0.113 4.113 13 C -0.097 4.097 14 C 0.052 3.948 15 H 0.027 0.973 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.115 4.115 25 C -0.106 4.106 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.336 0.664 36 H 0.037 0.963 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.805 -10.060 4.538 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.114 4.114 4 H 0.090 0.910 5 C -0.152 4.152 6 C -0.194 4.194 7 C -0.027 4.027 8 H 0.094 0.906 9 N -0.307 5.307 10 C -0.029 4.029 11 H 0.055 0.945 12 C -0.152 4.152 13 C -0.135 4.135 14 C 0.033 3.967 15 H 0.046 0.954 16 C -0.550 4.550 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.153 4.153 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.270 -10.114 5.121 19.831 hybrid contribution 0.276 0.542 -1.057 1.219 sum -15.995 -9.572 4.064 19.078 Atomic orbital electron populations 1.21784 0.96160 1.01253 1.01753 1.21500 0.95541 0.96280 1.01942 1.22191 0.95951 0.95535 0.97765 0.90973 1.22358 0.98206 0.97186 0.97447 1.22946 0.97369 0.98590 1.00502 1.22219 0.88181 0.96787 0.95516 0.90648 1.60710 1.24919 1.27326 1.17733 1.22486 0.94625 0.88066 0.97754 0.94496 1.22260 0.96931 0.99850 0.96142 1.22069 0.94589 0.98468 0.98394 1.19362 0.92615 0.92888 0.91857 0.95442 1.21131 0.98946 1.12318 1.22620 0.92771 1.24987 0.98513 0.95177 0.95350 1.69969 1.31564 1.15948 1.35465 0.86717 0.83269 0.77729 0.80615 1.20376 1.21405 1.20297 1.22726 0.97229 1.01489 0.93887 1.22423 0.93744 0.97413 1.00858 0.93082 0.92944 0.92697 0.91953 0.92112 0.92215 0.91738 0.92087 0.91793 0.84557 0.94418 0.92221 0.93085 0.93083 0.93122 0.91738 0.93972 0.90864 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.76 37.16 0.36 -0.76 16 2 C -0.12 -0.96 5.45 -26.73 -0.15 -1.11 16 3 C -0.10 -0.90 2.92 -88.59 -0.26 -1.16 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.11 -1.11 5.47 -25.07 -0.14 -1.24 16 6 C -0.15 -1.78 6.33 -25.61 -0.16 -1.94 16 7 C 0.08 1.09 3.07 -66.60 -0.20 0.88 16 8 H 0.08 1.06 7.77 -51.93 -0.40 0.66 16 9 N -0.68 -10.37 6.00 -96.84 -0.58 -10.95 16 10 C 0.08 1.45 2.99 -66.05 -0.20 1.25 16 11 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 12 C -0.11 -2.25 6.37 -25.62 -0.16 -2.41 16 13 C -0.10 -2.32 5.60 -25.62 -0.14 -2.46 16 14 C 0.05 1.31 2.72 -90.12 -0.25 1.06 16 15 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 16 C -0.51 -14.30 8.36 -34.44 -0.29 -14.59 16 17 H 0.05 1.49 7.77 -52.49 -0.41 1.08 16 18 C 0.06 1.73 5.35 -17.82 -0.10 1.63 16 19 N -0.89 -26.12 12.63 55.43 0.70 -25.42 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.12 -2.41 5.69 -24.75 -0.14 -2.55 16 25 C -0.11 -1.20 5.99 -25.03 -0.15 -1.35 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.40 7.40 -51.93 -0.38 0.02 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.01 -51.93 -0.42 0.12 16 32 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.78 7.58 -51.93 -0.39 0.38 16 35 H 0.34 4.87 7.91 -39.29 -0.31 4.56 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 38 H 0.05 1.30 8.06 -51.93 -0.42 0.88 16 39 H 0.05 1.31 7.83 -51.92 -0.41 0.90 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -28.11 337.48 -10.36 -38.47 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.57 Total: 0.94 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -1.97 Total: -24.75 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.12 Total: -36.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.11 -10.36 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.403 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds