Wall clock time and date at job start Mon Mar 30 2020 06:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 H 1.08998 * 110.66913 * 56.78122 * 3 2 1 5 5 C 1.54888 * 110.75521 * 293.54625 * 3 2 1 6 6 C 1.54272 * 104.19695 * 203.55668 * 5 3 2 7 7 C 1.53878 * 106.59329 * 23.61082 * 6 5 3 8 8 H 1.09001 * 110.03052 * 240.66493 * 7 6 5 9 9 N 1.46900 * 110.03009 * 119.28709 * 7 6 5 10 10 C 1.46903 * 111.00108 * 87.08854 * 9 7 6 11 11 H 1.08997 * 110.43499 * 323.91504 * 10 9 7 12 12 C 1.54266 * 110.48559 * 86.45463 * 10 9 7 13 13 C 1.53869 * 106.60029 * 142.29005 * 12 10 9 14 14 C 1.54266 * 106.60080 * 359.97438 * 13 12 10 15 15 H 1.08991 * 110.48773 * 95.06564 * 14 13 12 16 16 C 1.50700 * 110.48800 * 217.71872 * 14 13 12 17 17 H 1.07996 * 120.00624 * 114.77598 * 16 14 13 18 18 C 1.37883 * 119.99486 * 294.76860 * 16 14 13 19 19 N 1.31512 * 119.99716 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99749 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47081 * 59.99982 * 20 18 16 22 22 H 1.48496 * 109.47091 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46896 * 300.00143 * 20 18 16 24 24 C 1.54891 * 110.48521 * 201.22692 * 10 9 7 25 25 C 1.54259 * 106.64415 * 359.97438 * 7 6 5 26 26 H 1.09000 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47155 * 299.99900 * 1 2 3 28 28 H 1.09004 * 109.47407 * 60.00087 * 1 2 3 29 29 H 1.09001 * 109.47415 * 240.00487 * 2 1 3 30 30 H 1.08996 * 109.47188 * 120.00189 * 2 1 3 31 31 H 1.09001 * 110.48355 * 84.88279 * 5 3 2 32 32 H 1.09000 * 110.48987 * 322.23370 * 5 3 2 33 33 H 1.09001 * 110.02973 * 264.33126 * 6 5 3 34 34 H 1.08994 * 110.07390 * 142.91594 * 6 5 3 35 35 H 1.00899 * 110.99857 * 323.13369 * 9 7 6 36 36 H 1.09000 * 110.03049 * 261.57663 * 12 10 9 37 37 H 1.09001 * 110.03650 * 23.00146 * 12 10 9 38 38 H 1.08999 * 110.03445 * 119.28652 * 13 12 10 39 39 H 1.09009 * 110.03169 * 240.71589 * 13 12 10 40 40 H 0.97008 * 119.99139 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.75776 * 321.69512 * 24 10 9 42 42 H 1.08996 * 110.75513 * 84.88663 * 24 10 9 43 43 H 1.09000 * 110.48553 * 95.09214 * 25 7 6 44 44 H 1.09000 * 110.48754 * 217.73615 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6415 1.9915 0.8532 5 6 1.6774 2.1529 -1.3278 6 6 2.7158 3.2877 -1.4455 7 6 3.9308 2.8608 -0.6033 8 1 4.1046 3.5831 0.1943 9 7 5.1225 2.7568 -1.4559 10 6 5.8029 4.0537 -1.5701 11 1 5.0750 4.8646 -1.5938 12 6 6.7914 4.2496 -0.4020 13 6 8.0237 4.9638 -0.9840 14 6 7.7415 5.1766 -2.4857 15 1 7.3278 6.1699 -2.6591 16 6 8.9994 4.9794 -3.2919 17 1 9.0691 4.1604 -3.9924 18 6 10.0613 5.8448 -3.1352 19 7 9.9765 6.8419 -2.2819 20 14 11.6202 5.6009 -4.1350 21 1 11.2985 5.6860 -5.5822 22 1 12.6041 6.6561 -3.7832 23 1 12.1976 4.2662 -3.8339 24 6 6.6974 4.0872 -2.8342 25 6 3.5891 1.4818 -0.0022 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.6686 2.5626 -1.2781 32 1 1.7693 1.4632 -2.1669 33 1 2.2994 4.2167 -1.0560 34 1 3.0106 3.4185 -2.4867 35 1 4.8852 2.3916 -2.3660 36 1 6.3353 4.8644 0.3739 37 1 7.0800 3.2822 0.0091 38 1 8.1658 5.9253 -0.4905 39 1 8.9105 4.3430 -0.8554 40 1 10.7238 7.4505 -2.1715 41 1 7.1823 3.1235 -2.9899 42 1 6.1161 4.3716 -3.7113 43 1 3.9899 0.6835 -0.6268 44 1 3.9750 1.4025 1.0142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378855924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:15 Heat of formation + Delta-G solvation = -57.119476 kcal Electronic energy + Delta-G solvation = -18807.669292 eV Core-core repulsion = 16143.004012 eV Total energy + Delta-G solvation = -2664.665279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19107 -38.68910 -35.64601 -34.21419 -32.35980 -29.88753 -29.61682 -28.53930 -26.54692 -25.29879 -23.54124 -21.48800 -21.01436 -20.66889 -20.18961 -18.32677 -17.14266 -16.57897 -16.56177 -15.96861 -15.73759 -15.13054 -14.57034 -14.44481 -14.15844 -14.06896 -13.86705 -13.51168 -13.04167 -12.91629 -12.78902 -12.65525 -12.51759 -12.26019 -11.98590 -11.86763 -11.72509 -11.66699 -11.56415 -11.39597 -11.35956 -11.24135 -11.22942 -10.86405 -10.74537 -10.46771 -9.21288 -8.11470 -6.20958 1.41129 1.42973 1.50441 2.43992 3.19341 3.24379 3.70604 3.76917 3.94753 4.04000 4.12724 4.29565 4.35982 4.38339 4.47078 4.63806 4.68325 4.72119 4.78616 4.78885 4.87120 4.88558 4.98783 5.01678 5.09661 5.12754 5.13911 5.16923 5.20659 5.27106 5.28924 5.35342 5.40140 5.45337 5.50611 5.55366 5.64983 5.67002 5.91194 5.99042 6.32426 6.41947 6.61274 6.90394 7.46219 8.97852 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.057434 B = 0.003636 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.399034 B = 7698.070670 C = 7769.777443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.089 4.089 4 H 0.075 0.925 5 C -0.109 4.109 6 C -0.152 4.152 7 C 0.081 3.919 8 H 0.065 0.935 9 N -0.677 5.677 10 C 0.096 3.904 11 H 0.040 0.960 12 C -0.103 4.103 13 C -0.088 4.088 14 C 0.041 3.959 15 H -0.003 1.003 16 C -0.532 4.532 17 H 0.054 0.946 18 C 0.009 3.991 19 N -0.922 5.922 20 Si 0.954 3.046 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.104 4.104 25 C -0.102 4.102 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.343 0.657 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.075 -11.466 4.365 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.107 4.107 4 H 0.093 0.907 5 C -0.146 4.146 6 C -0.192 4.192 7 C -0.029 4.029 8 H 0.083 0.917 9 N -0.308 5.308 10 C -0.014 4.014 11 H 0.058 0.942 12 C -0.141 4.141 13 C -0.126 4.126 14 C 0.022 3.978 15 H 0.015 0.985 16 C -0.570 4.570 17 H 0.072 0.928 18 C -0.189 4.189 19 N -0.561 5.561 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.142 4.142 25 C -0.141 4.141 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.561 -11.538 4.943 21.586 hybrid contribution 0.666 0.997 -0.991 1.555 sum -16.895 -10.542 3.952 20.302 Atomic orbital electron populations 1.21770 0.95309 1.01807 1.01925 1.21479 0.96249 0.95340 1.02004 1.22148 0.94423 0.96402 0.97776 0.90665 1.22332 0.98160 0.96512 0.97623 1.22889 0.97185 0.99388 0.99711 1.22297 0.87812 0.97767 0.95053 0.91691 1.60642 1.26330 1.25288 1.18515 1.22173 0.94127 0.89786 0.95267 0.94235 1.22130 0.95432 0.99658 0.96929 1.21869 0.95730 0.97190 0.97853 1.19362 0.93113 0.92816 0.92503 0.98510 1.21523 1.00203 1.12326 1.22920 0.92818 1.25803 1.01791 0.94912 0.96437 1.70101 1.32473 1.16735 1.36834 0.85677 0.79272 0.77813 0.79306 1.19483 1.21046 1.19609 1.22544 0.96545 0.99471 0.95671 1.22378 0.95210 0.96018 1.00456 0.92405 0.92691 0.92604 0.92093 0.91912 0.91086 0.91447 0.92002 0.92378 0.83732 0.92985 0.91737 0.95548 0.95442 0.93157 0.92115 0.92948 0.91235 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.76 71.98 0.70 -1.15 16 2 C -0.11 -1.62 5.45 30.59 0.17 -1.45 16 3 C -0.09 -1.47 2.92 -9.48 -0.03 -1.49 16 4 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 5 C -0.11 -1.83 5.47 31.67 0.17 -1.66 16 6 C -0.15 -3.20 6.33 31.32 0.20 -3.01 16 7 C 0.08 1.96 3.07 45.64 0.14 2.10 16 8 H 0.06 1.73 7.77 -2.39 -0.02 1.71 16 9 N -0.68 -19.64 6.00 -460.29 -2.76 -22.40 16 10 C 0.10 3.41 2.99 45.99 0.14 3.54 16 11 H 0.04 1.40 7.83 -2.39 -0.02 1.38 16 12 C -0.10 -4.04 6.37 31.32 0.20 -3.84 16 13 C -0.09 -4.33 5.60 31.32 0.18 -4.15 16 14 C 0.04 2.12 2.72 -10.47 -0.03 2.10 16 15 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 16 C -0.53 -30.18 8.36 25.60 0.21 -29.97 16 17 H 0.05 2.97 7.77 -2.91 -0.02 2.95 16 18 C 0.01 0.52 5.35 84.66 0.45 0.97 16 19 N -0.92 -55.35 12.63 21.45 0.27 -55.08 16 20 Si 0.95 44.68 29.54 68.60 2.03 46.70 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.10 -4.32 5.69 31.88 0.18 -4.14 16 25 C -0.10 -2.11 5.99 31.69 0.19 -1.92 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.67 7.40 -2.39 -0.02 0.66 16 29 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.06 8.01 -2.39 -0.02 1.05 16 32 H 0.07 1.12 8.02 -2.39 -0.02 1.10 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.30 7.58 -2.39 -0.02 1.28 16 35 H 0.34 9.29 7.91 -89.69 -0.71 8.58 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 38 H 0.03 1.38 8.06 -2.39 -0.02 1.36 16 39 H 0.03 1.43 7.83 -2.38 -0.02 1.41 16 40 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 41 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -60.55 337.48 2.63 -57.92 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.22 Total: 16.92 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 2.88 Total: -44.07 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.49 Total: -77.47 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -60.55 2.63 -57.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.798 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds