Wall clock time and date at job start Mon Mar 30 2020 06:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46747 * 2 1 4 4 H 1.09002 * 110.67254 * 54.29686 * 3 2 1 5 5 C 1.54887 * 110.75480 * 291.05998 * 3 2 1 6 6 C 1.54757 * 103.96441 * 203.66881 * 5 3 2 7 7 C 1.53872 * 106.65180 * 23.57130 * 6 5 3 8 8 H 1.09000 * 110.07593 * 240.69904 * 7 6 5 9 9 N 1.46899 * 110.03320 * 119.29417 * 7 6 5 10 10 C 1.46893 * 111.00109 * 87.83331 * 9 7 6 11 11 H 1.08999 * 110.67543 * 34.29712 * 10 9 7 12 12 C 1.54893 * 110.75456 * 271.06328 * 10 9 7 13 13 C 1.54476 * 104.09871 * 203.89203 * 12 10 9 14 14 C 1.53878 * 106.68543 * 23.34476 * 13 12 10 15 15 H 1.08999 * 110.03277 * 240.87413 * 14 13 12 16 16 C 1.50698 * 110.03203 * 119.44074 * 14 13 12 17 17 H 1.08005 * 119.99725 * 242.83408 * 16 14 13 18 18 C 1.37876 * 119.99977 * 62.83085 * 16 14 13 19 19 N 1.31508 * 120.00113 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99938 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47001 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47056 * 120.00150 * 20 18 16 23 23 H 1.48495 * 109.47116 * 240.00520 * 20 18 16 24 24 C 1.54264 * 106.59694 * 0.15849 * 14 13 12 25 25 C 1.54265 * 106.59766 * 0.02562 * 7 6 5 26 26 H 1.09006 * 109.46456 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47602 * 299.99813 * 1 2 3 28 28 H 1.09004 * 109.47211 * 60.00712 * 1 2 3 29 29 H 1.08995 * 109.47602 * 240.00187 * 2 1 3 30 30 H 1.09004 * 109.47211 * 119.99288 * 2 1 3 31 31 H 1.08998 * 110.49004 * 322.23782 * 5 3 2 32 32 H 1.09001 * 110.48617 * 84.88291 * 5 3 2 33 33 H 1.08996 * 110.00094 * 264.27075 * 6 5 3 34 34 H 1.09008 * 110.05485 * 142.89417 * 6 5 3 35 35 H 1.00907 * 111.00067 * 211.79073 * 9 7 6 36 36 H 1.08991 * 110.48840 * 322.41891 * 12 10 9 37 37 H 1.09001 * 110.48499 * 85.06521 * 12 10 9 38 38 H 1.08997 * 109.85926 * 264.10580 * 13 12 10 39 39 H 1.08999 * 110.11590 * 142.72575 * 13 12 10 40 40 H 0.96996 * 119.99897 * 179.97438 * 19 18 16 41 41 H 1.09005 * 110.48436 * 217.71296 * 24 14 13 42 42 H 1.09003 * 110.60304 * 95.12391 * 24 14 13 43 43 H 1.09005 * 110.48489 * 217.71127 * 25 7 6 44 44 H 1.08999 * 110.49056 * 95.07011 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6070 2.0037 0.8282 5 6 1.7321 2.1335 -1.3516 6 6 2.7822 3.2669 -1.4393 7 6 3.9589 2.8483 -0.5406 8 1 4.1010 3.5800 0.2548 9 7 5.1856 2.7302 -1.3401 10 6 5.8832 4.0200 -1.4274 11 1 5.7631 4.5858 -0.5036 12 6 5.3761 4.8373 -2.6415 13 6 6.5448 5.7939 -2.9658 14 6 7.8187 5.1432 -2.3987 15 1 8.2676 5.7934 -1.6479 16 6 8.8025 4.8804 -3.5096 17 1 9.0967 3.8675 -3.7420 18 6 9.3270 5.9330 -4.2293 19 7 8.9692 7.1663 -3.9460 20 14 10.5471 5.6073 -5.6059 21 1 10.7829 4.1458 -5.7228 22 1 9.9989 6.1238 -6.8857 23 1 11.8290 6.2933 -5.3037 24 6 7.3833 3.8118 -1.7526 25 6 3.5873 1.4777 0.0620 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.8580 1.4319 -2.1762 32 1 0.7222 2.5436 -1.3492 33 1 2.3523 4.2020 -1.0802 34 1 3.1216 3.3833 -2.4686 35 1 5.7925 2.0152 -0.9678 36 1 5.1772 4.1798 -3.4877 37 1 4.4811 5.3998 -2.3756 38 1 6.3755 6.7599 -2.4902 39 1 6.6382 5.9195 -4.0445 40 1 9.3385 7.9069 -4.4521 41 1 7.9495 3.6277 -0.8395 42 1 7.5109 2.9860 -2.4525 43 1 3.9291 1.4097 1.0948 44 1 4.0118 0.6706 -0.5351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378855925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:18 Heat of formation + Delta-G solvation = -41.604282 kcal Electronic energy + Delta-G solvation = -18889.827527 eV Core-core repulsion = 16225.835037 eV Total energy + Delta-G solvation = -2663.992490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.01725 -37.18364 -34.33025 -32.46892 -31.19974 -28.72960 -27.90398 -27.19667 -25.13293 -23.49727 -22.79171 -20.25094 -19.51090 -19.30222 -18.85284 -16.23470 -15.96324 -15.25942 -14.80015 -14.66731 -14.47007 -14.24905 -13.49929 -13.16881 -13.05011 -12.69785 -12.23502 -12.14023 -11.93899 -11.39672 -11.31673 -11.13209 -10.96792 -10.86828 -10.65159 -10.59192 -10.47399 -10.43657 -10.33975 -10.10784 -10.02346 -9.77193 -9.52322 -9.07516 -8.60324 -8.30087 -7.99784 -5.94205 -3.96568 3.33536 3.41503 3.45733 4.41706 4.50336 4.55622 4.61016 4.83871 5.09754 5.17581 5.23344 5.36773 5.48219 5.53528 5.55690 5.61750 5.70530 5.72358 5.77927 5.80625 5.83383 5.98838 6.01848 6.04538 6.10582 6.14070 6.23315 6.37887 6.43001 6.53855 6.60916 6.75723 6.85995 6.91849 7.09080 7.28623 7.46384 7.67738 7.78805 7.84081 8.01054 8.07280 8.55750 9.07184 9.66812 11.15276 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.050994 B = 0.003782 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.954928 B = 7401.627657 C = 7489.220002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.091 4.091 4 H 0.071 0.929 5 C -0.114 4.114 6 C -0.116 4.116 7 C 0.084 3.916 8 H 0.041 0.959 9 N -0.676 5.676 10 C 0.078 3.922 11 H 0.038 0.962 12 C -0.108 4.108 13 C -0.092 4.092 14 C 0.047 3.953 15 H 0.024 0.976 16 C -0.508 4.508 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.335 0.665 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.062 0.938 40 H 0.258 0.742 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 -10.809 8.091 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.110 4.110 4 H 0.090 0.910 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.026 4.026 8 H 0.059 0.941 9 N -0.307 5.307 10 C -0.031 4.031 11 H 0.056 0.944 12 C -0.146 4.146 13 C -0.131 4.131 14 C 0.028 3.972 15 H 0.042 0.958 16 C -0.546 4.546 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.152 4.152 25 C -0.161 4.161 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.860 -10.537 7.435 19.676 hybrid contribution 1.072 0.136 0.147 1.090 sum -13.788 -10.401 7.582 18.862 Atomic orbital electron populations 1.21778 0.96078 1.01253 1.01815 1.21518 0.95674 0.96302 1.01837 1.22109 0.95114 0.95663 0.98118 0.91019 1.22474 0.98271 0.97659 0.96806 1.22321 0.94436 0.97113 1.01597 1.22180 0.91491 0.95650 0.93306 0.94148 1.60739 1.07245 1.08291 1.54399 1.22710 0.94651 0.88638 0.97149 0.94379 1.22462 0.97650 0.97541 0.96952 1.22090 0.93757 0.95676 1.01595 1.19175 0.92964 0.90119 0.94894 0.95787 1.21304 1.24445 0.92734 1.16161 0.92696 1.24989 0.96625 0.95233 0.97377 1.69996 1.43972 0.98206 1.40751 0.86611 0.81221 0.78311 0.82306 1.19808 1.21121 1.21185 1.22636 0.91974 1.01518 0.99083 1.22637 0.95650 0.97627 1.00159 0.93093 0.92981 0.92563 0.91858 0.92314 0.91582 0.92267 0.92714 0.90114 0.84657 0.91939 0.94285 0.94766 0.91906 0.93255 0.94265 0.91676 0.92214 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.78 37.16 0.36 -0.79 16 2 C -0.12 -0.98 5.43 -26.73 -0.15 -1.13 16 3 C -0.09 -0.88 2.89 -88.62 -0.26 -1.14 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.11 -1.21 5.61 -24.81 -0.14 -1.35 16 6 C -0.12 -1.50 6.12 -25.35 -0.16 -1.65 16 7 C 0.08 1.11 3.25 -66.60 -0.22 0.89 16 8 H 0.04 0.57 7.47 -51.93 -0.39 0.18 16 9 N -0.68 -10.42 6.06 -96.50 -0.58 -11.01 16 10 C 0.08 1.42 3.19 -65.72 -0.21 1.21 16 11 H 0.04 0.71 7.49 -51.93 -0.39 0.32 16 12 C -0.11 -2.14 5.30 -24.96 -0.13 -2.27 16 13 C -0.09 -2.22 5.61 -25.50 -0.14 -2.37 16 14 C 0.05 1.20 2.82 -90.65 -0.26 0.94 16 15 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.51 -14.17 8.32 -34.44 -0.29 -14.46 16 17 H 0.05 1.52 7.54 -52.48 -0.40 1.13 16 18 C 0.06 1.66 5.09 -17.82 -0.09 1.57 16 19 N -0.89 -26.08 12.45 55.43 0.69 -25.39 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.11 -2.39 5.75 -25.07 -0.14 -2.53 16 25 C -0.12 -1.33 5.70 -25.06 -0.14 -1.47 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 29 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.72 7.98 -51.93 -0.41 0.31 16 32 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.19 7.10 -51.92 -0.37 0.82 16 35 H 0.34 4.83 8.05 -39.29 -0.32 4.52 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.67 7.26 -51.93 -0.38 1.29 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.40 7.68 -51.93 -0.40 1.00 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -28.24 334.07 -10.30 -38.54 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.46 Total: 0.75 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -1.95 Total: -24.55 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.11 Total: -36.40 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.24 -10.30 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.065 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds