Wall clock time and date at job start Mon Mar 30 2020 06:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46747 * 2 1 4 4 H 1.09002 * 110.67254 * 54.29686 * 3 2 1 5 5 C 1.54887 * 110.75480 * 291.05998 * 3 2 1 6 6 C 1.54757 * 103.96441 * 203.66881 * 5 3 2 7 7 C 1.53872 * 106.65180 * 23.57130 * 6 5 3 8 8 H 1.09000 * 110.07593 * 240.69904 * 7 6 5 9 9 N 1.46899 * 110.03320 * 119.29417 * 7 6 5 10 10 C 1.46893 * 111.00109 * 87.83331 * 9 7 6 11 11 H 1.08999 * 110.67543 * 34.29712 * 10 9 7 12 12 C 1.54893 * 110.75456 * 271.06328 * 10 9 7 13 13 C 1.54476 * 104.09871 * 203.89203 * 12 10 9 14 14 C 1.53878 * 106.68543 * 23.34476 * 13 12 10 15 15 H 1.08999 * 110.03277 * 240.87413 * 14 13 12 16 16 C 1.50698 * 110.03203 * 119.44074 * 14 13 12 17 17 H 1.08005 * 119.99725 * 242.83408 * 16 14 13 18 18 C 1.37876 * 119.99977 * 62.83085 * 16 14 13 19 19 N 1.31508 * 120.00113 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99938 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47001 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47056 * 120.00150 * 20 18 16 23 23 H 1.48495 * 109.47116 * 240.00520 * 20 18 16 24 24 C 1.54264 * 106.59694 * 0.15849 * 14 13 12 25 25 C 1.54265 * 106.59766 * 0.02562 * 7 6 5 26 26 H 1.09006 * 109.46456 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47602 * 299.99813 * 1 2 3 28 28 H 1.09004 * 109.47211 * 60.00712 * 1 2 3 29 29 H 1.08995 * 109.47602 * 240.00187 * 2 1 3 30 30 H 1.09004 * 109.47211 * 119.99288 * 2 1 3 31 31 H 1.08998 * 110.49004 * 322.23782 * 5 3 2 32 32 H 1.09001 * 110.48617 * 84.88291 * 5 3 2 33 33 H 1.08996 * 110.00094 * 264.27075 * 6 5 3 34 34 H 1.09008 * 110.05485 * 142.89417 * 6 5 3 35 35 H 1.00907 * 111.00067 * 211.79073 * 9 7 6 36 36 H 1.08991 * 110.48840 * 322.41891 * 12 10 9 37 37 H 1.09001 * 110.48499 * 85.06521 * 12 10 9 38 38 H 1.08997 * 109.85926 * 264.10580 * 13 12 10 39 39 H 1.08999 * 110.11590 * 142.72575 * 13 12 10 40 40 H 0.96996 * 119.99897 * 179.97438 * 19 18 16 41 41 H 1.09005 * 110.48436 * 217.71296 * 24 14 13 42 42 H 1.09003 * 110.60304 * 95.12391 * 24 14 13 43 43 H 1.09005 * 110.48489 * 217.71127 * 25 7 6 44 44 H 1.08999 * 110.49056 * 95.07011 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6070 2.0037 0.8282 5 6 1.7321 2.1335 -1.3516 6 6 2.7822 3.2669 -1.4393 7 6 3.9589 2.8483 -0.5406 8 1 4.1010 3.5800 0.2548 9 7 5.1856 2.7302 -1.3401 10 6 5.8832 4.0200 -1.4274 11 1 5.7631 4.5858 -0.5036 12 6 5.3761 4.8373 -2.6415 13 6 6.5448 5.7939 -2.9658 14 6 7.8187 5.1432 -2.3987 15 1 8.2676 5.7934 -1.6479 16 6 8.8025 4.8804 -3.5096 17 1 9.0967 3.8675 -3.7420 18 6 9.3270 5.9330 -4.2293 19 7 8.9692 7.1663 -3.9460 20 14 10.5471 5.6073 -5.6059 21 1 10.7829 4.1458 -5.7228 22 1 9.9989 6.1238 -6.8857 23 1 11.8290 6.2933 -5.3037 24 6 7.3833 3.8118 -1.7526 25 6 3.5873 1.4777 0.0620 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.8580 1.4319 -2.1762 32 1 0.7222 2.5436 -1.3492 33 1 2.3523 4.2020 -1.0802 34 1 3.1216 3.3833 -2.4686 35 1 5.7925 2.0152 -0.9678 36 1 5.1772 4.1798 -3.4877 37 1 4.4811 5.3998 -2.3756 38 1 6.3755 6.7599 -2.4902 39 1 6.6382 5.9195 -4.0445 40 1 9.3385 7.9069 -4.4521 41 1 7.9495 3.6277 -0.8395 42 1 7.5109 2.9860 -2.4525 43 1 3.9291 1.4097 1.0948 44 1 4.0118 0.6706 -0.5351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378855925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:18 Heat of formation + Delta-G solvation = -56.167913 kcal Electronic energy + Delta-G solvation = -18890.459054 eV Core-core repulsion = 16225.835037 eV Total energy + Delta-G solvation = -2664.624017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12604 -38.67111 -35.64925 -34.15389 -32.46746 -30.04199 -29.41346 -28.53643 -26.55062 -25.34625 -23.54767 -21.34467 -20.93234 -20.59480 -20.41068 -18.24850 -16.96644 -16.68914 -16.50801 -16.14762 -15.73996 -15.27790 -14.61146 -14.39287 -14.19715 -14.04490 -13.89236 -13.47291 -13.00043 -12.85370 -12.72757 -12.50060 -12.35579 -12.23813 -12.05131 -11.85874 -11.75962 -11.58669 -11.53806 -11.46717 -11.33378 -11.21100 -11.18288 -10.89895 -10.70439 -10.45287 -9.28266 -8.11344 -6.20891 1.39603 1.41192 1.52976 2.43819 3.19339 3.26292 3.66765 3.75845 3.97421 4.04264 4.13436 4.33617 4.34536 4.42106 4.52684 4.65218 4.66023 4.69890 4.76252 4.84532 4.87095 4.92548 4.99334 5.02215 5.07086 5.12589 5.18062 5.20976 5.23145 5.28137 5.30489 5.35318 5.43103 5.48493 5.49551 5.58529 5.65489 5.68293 5.94456 5.95353 6.34354 6.42143 6.62269 6.91614 7.46262 8.97968 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.050994 B = 0.003782 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.954928 B = 7401.627657 C = 7489.220002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.085 4.085 4 H 0.077 0.923 5 C -0.109 4.109 6 C -0.119 4.119 7 C 0.081 3.919 8 H 0.037 0.963 9 N -0.676 5.676 10 C 0.095 3.905 11 H 0.041 0.959 12 C -0.094 4.094 13 C -0.085 4.085 14 C 0.038 3.962 15 H -0.008 1.008 16 C -0.526 4.526 17 H 0.053 0.947 18 C 0.007 3.993 19 N -0.922 5.922 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.104 4.104 25 C -0.117 4.117 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.344 0.656 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.029 0.971 40 H 0.259 0.741 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.579 -12.488 8.660 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.104 4.104 4 H 0.096 0.904 5 C -0.147 4.147 6 C -0.157 4.157 7 C -0.029 4.029 8 H 0.055 0.945 9 N -0.307 5.307 10 C -0.015 4.015 11 H 0.059 0.941 12 C -0.133 4.133 13 C -0.124 4.124 14 C 0.019 3.981 15 H 0.010 0.990 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.191 4.191 19 N -0.561 5.561 20 Si 0.779 3.221 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.142 4.142 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.865 -12.237 8.013 21.579 hybrid contribution 1.381 0.687 -0.016 1.542 sum -14.485 -11.550 7.998 20.179 Atomic orbital electron populations 1.21771 0.95374 1.01806 1.01909 1.21490 0.96268 0.95320 1.01993 1.22084 0.94211 0.96498 0.97611 0.90444 1.22434 0.98115 0.96824 0.97323 1.22318 0.95023 0.98207 1.00158 1.22284 0.90384 0.97214 0.93037 0.94528 1.60656 1.07787 1.06779 1.55528 1.22405 0.92851 0.89946 0.96319 0.94068 1.22307 0.96476 0.96823 0.97660 1.21899 0.95256 0.96109 0.99096 1.19190 0.93006 0.92027 0.93892 0.99014 1.21654 1.25110 0.92710 1.16979 0.92887 1.25793 0.98468 0.95021 0.99801 1.70119 1.45111 0.99010 1.41887 0.85573 0.78839 0.78497 0.79181 1.18965 1.20724 1.20649 1.22456 0.94057 0.98655 0.99046 1.22598 0.96534 0.95849 1.00494 0.92380 0.92571 0.92790 0.92258 0.91631 0.91972 0.91162 0.92555 0.92195 0.83696 0.92335 0.92551 0.96144 0.95159 0.93202 0.93021 0.92142 0.91118 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.78 71.98 0.70 -1.21 16 2 C -0.11 -1.62 5.43 30.59 0.17 -1.45 16 3 C -0.09 -1.42 2.89 -9.50 -0.03 -1.45 16 4 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.11 -2.09 5.61 31.84 0.18 -1.91 16 6 C -0.12 -2.86 6.12 31.49 0.19 -2.67 16 7 C 0.08 1.97 3.25 45.64 0.15 2.12 16 8 H 0.04 0.95 7.47 -2.39 -0.02 0.93 16 9 N -0.68 -19.71 6.06 -459.21 -2.78 -22.49 16 10 C 0.09 3.36 3.19 46.21 0.15 3.51 16 11 H 0.04 1.47 7.49 -2.39 -0.02 1.45 16 12 C -0.09 -3.73 5.30 31.74 0.17 -3.56 16 13 C -0.08 -4.20 5.61 31.39 0.18 -4.02 16 14 C 0.04 1.96 2.82 -10.82 -0.03 1.93 16 15 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 16 C -0.53 -29.90 8.32 25.60 0.21 -29.69 16 17 H 0.05 2.96 7.54 -2.91 -0.02 2.94 16 18 C 0.01 0.42 5.09 84.66 0.43 0.85 16 19 N -0.92 -55.32 12.45 21.45 0.27 -55.05 16 20 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 C -0.10 -4.32 5.75 31.67 0.18 -4.14 16 25 C -0.12 -2.23 5.70 31.67 0.18 -2.05 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.70 7.51 -2.39 -0.02 0.69 16 29 H 0.06 0.90 8.05 -2.39 -0.02 0.88 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.24 7.98 -2.39 -0.02 1.22 16 32 H 0.07 1.19 8.04 -2.39 -0.02 1.17 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.70 7.10 -2.38 -0.02 1.68 16 35 H 0.34 9.19 8.05 -89.69 -0.72 8.47 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 2.02 8.08 -2.39 -0.02 2.01 16 38 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 39 H 0.03 1.65 7.26 -2.39 -0.02 1.63 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.06 2.56 7.68 -2.39 -0.02 2.54 16 43 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 44 H 0.07 1.46 7.87 -2.39 -0.02 1.45 16 Total: -1.00 -61.10 334.07 2.55 -58.55 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.21 Total: 15.89 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 2.83 Total: -43.73 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.51 Total: -77.55 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -61.10 2.55 -58.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.377 kcal (2) G-P(sol) polarization free energy of solvation -61.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds