Wall clock time and date at job start Mon Mar 30 2020 06:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47304 * 2 1 4 4 H 1.08998 * 110.43379 * 52.45834 * 3 2 1 5 5 C 1.54273 * 110.48535 * 289.77649 * 3 2 1 6 6 C 1.53876 * 106.59634 * 217.71386 * 5 3 2 7 7 C 1.54267 * 106.59865 * 359.97438 * 6 5 3 8 8 H 1.09004 * 110.59939 * 264.87932 * 7 6 5 9 9 N 1.46900 * 110.48442 * 142.29251 * 7 6 5 10 10 C 1.46900 * 110.99957 * 90.22443 * 9 7 6 11 11 H 1.09002 * 110.43501 * 34.29827 * 10 9 7 12 12 C 1.54891 * 110.48612 * 271.75565 * 10 9 7 13 13 C 1.54892 * 102.74959 * 203.24978 * 12 10 9 14 14 C 1.54264 * 104.19651 * 37.93955 * 13 12 10 15 15 H 1.09000 * 110.03134 * 95.72352 * 14 13 12 16 16 C 1.50699 * 110.03724 * 217.10934 * 14 13 12 17 17 H 1.07997 * 120.00215 * 118.54492 * 16 14 13 18 18 C 1.37877 * 119.99515 * 298.54788 * 16 14 13 19 19 N 1.31516 * 120.00162 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00029 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46607 * 60.00040 * 20 18 16 22 22 H 1.48498 * 109.47242 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46935 * 300.00466 * 20 18 16 24 24 C 1.54224 * 106.63737 * 336.40572 * 14 13 12 25 25 C 1.54882 * 110.48747 * 175.00032 * 3 2 1 26 26 H 1.09007 * 109.46953 * 300.00256 * 1 2 3 27 27 H 1.09005 * 109.46858 * 59.99679 * 1 2 3 28 28 H 1.08996 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46938 * 239.99800 * 2 1 3 30 30 H 1.08992 * 109.46975 * 120.00051 * 2 1 3 31 31 H 1.09002 * 110.02915 * 336.99295 * 5 3 2 32 32 H 1.08996 * 110.02990 * 98.37682 * 5 3 2 33 33 H 1.09001 * 110.02973 * 240.71525 * 6 5 3 34 34 H 1.08992 * 110.03295 * 119.28287 * 6 5 3 35 35 H 1.00895 * 110.99919 * 326.26996 * 9 7 6 36 36 H 1.09000 * 110.75322 * 321.56253 * 12 10 9 37 37 H 1.09002 * 110.75658 * 84.93452 * 12 10 9 38 38 H 1.08993 * 110.48715 * 156.62375 * 13 12 10 39 39 H 1.09001 * 110.48596 * 279.13315 * 13 12 10 40 40 H 0.97004 * 120.00226 * 180.02562 * 19 18 16 41 41 H 1.08998 * 110.14251 * 240.73074 * 24 14 13 42 42 H 1.09004 * 110.08793 * 119.19319 * 24 14 13 43 43 H 1.09003 * 110.75468 * 38.30726 * 25 3 2 44 44 H 1.09002 * 110.91698 * 275.00983 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0088 0.8099 5 6 1.7590 2.1145 -1.3599 6 6 2.9738 3.0072 -1.6684 7 6 3.9503 2.8470 -0.4849 8 1 3.8010 3.6420 0.2458 9 7 5.3397 2.8431 -0.9617 10 6 5.8918 4.2042 -0.9863 11 1 5.4871 4.7939 -0.1637 12 6 5.5896 4.8873 -2.3432 13 6 6.6929 5.9706 -2.4337 14 6 7.9418 5.2895 -1.8369 15 1 8.5554 4.8703 -2.6343 16 6 8.7425 6.2867 -1.0397 17 1 8.8998 6.1314 0.0174 18 6 9.2742 7.3973 -1.6600 19 7 9.0821 7.5867 -2.9472 20 14 10.2661 8.6339 -0.6717 21 1 11.4454 7.9577 -0.0740 22 1 10.7237 9.7284 -1.5649 23 1 9.4183 9.1979 0.4091 24 6 7.4322 4.1633 -0.9146 25 6 3.5834 1.4718 0.1264 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.6465 1.3563 -2.1349 32 1 0.8554 2.7208 -1.2971 33 1 2.6602 4.0476 -1.7551 34 1 3.4507 2.6823 -2.5930 35 1 5.4092 2.4083 -1.8695 36 1 5.6798 4.1747 -3.1630 37 1 4.5998 5.3439 -2.3339 38 1 6.8699 6.2490 -3.4725 39 1 6.4166 6.8466 -1.8468 40 1 9.4565 8.3679 -3.3836 41 1 7.7632 4.3380 0.1092 42 1 7.7969 3.1980 -1.2657 43 1 4.0334 0.6614 -0.4471 44 1 3.8893 1.4197 1.1714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378855926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:21 Heat of formation + Delta-G solvation = -42.667322 kcal Electronic energy + Delta-G solvation = -18870.260831 eV Core-core repulsion = 16206.222244 eV Total energy + Delta-G solvation = -2664.038587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.11042 -37.26260 -34.34563 -32.49075 -31.10788 -28.71469 -27.92978 -27.19129 -25.10820 -23.39340 -22.74318 -20.54258 -19.74164 -19.42574 -18.68479 -16.40329 -16.10895 -15.37838 -14.93729 -14.43425 -14.17355 -13.93243 -13.31922 -13.14824 -13.10059 -12.51624 -12.35214 -12.18698 -11.98721 -11.74014 -11.38702 -11.29156 -10.97132 -10.78992 -10.73717 -10.66335 -10.56200 -10.53565 -10.48472 -10.36574 -9.90322 -9.71972 -9.48614 -9.11756 -8.65758 -8.31000 -7.84415 -5.94421 -3.96581 3.35434 3.39847 3.42731 4.35462 4.49242 4.57708 4.65723 4.90665 5.03746 5.11270 5.18529 5.37266 5.43608 5.51232 5.53153 5.62557 5.66290 5.72572 5.77528 5.78525 5.83383 5.91933 5.99036 6.02027 6.05563 6.08941 6.25036 6.31573 6.37596 6.42584 6.57618 6.69173 6.81004 6.92437 7.13664 7.26161 7.43736 7.65341 7.80620 7.83176 7.96250 8.09543 8.54862 9.06776 9.66743 11.14927 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.056753 B = 0.003734 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.248519 B = 7496.662529 C = 7680.345132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.095 4.095 4 H 0.071 0.929 5 C -0.115 4.115 6 C -0.151 4.151 7 C 0.084 3.916 8 H 0.077 0.923 9 N -0.678 5.678 10 C 0.086 3.914 11 H 0.071 0.929 12 C -0.155 4.155 13 C -0.088 4.088 14 C 0.043 3.957 15 H 0.024 0.976 16 C -0.511 4.511 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.102 4.102 25 C -0.107 4.107 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.337 0.663 36 H 0.051 0.949 37 H 0.043 0.957 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.259 0.741 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 -12.097 3.393 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.114 4.114 4 H 0.090 0.910 5 C -0.153 4.153 6 C -0.191 4.191 7 C -0.026 4.026 8 H 0.096 0.904 9 N -0.307 5.307 10 C -0.023 4.023 11 H 0.090 0.910 12 C -0.195 4.195 13 C -0.126 4.126 14 C 0.025 3.975 15 H 0.043 0.957 16 C -0.549 4.549 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.140 4.140 25 C -0.145 4.145 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.156 0.844 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.023 -12.118 3.871 19.686 hybrid contribution 0.041 1.267 -0.396 1.328 sum -14.982 -10.850 3.476 18.822 Atomic orbital electron populations 1.21791 0.96178 1.01238 1.01772 1.21552 0.95542 0.96317 1.01885 1.22028 0.96179 0.95656 0.97520 0.91022 1.22147 0.97771 0.98474 0.96909 1.22928 0.97021 0.99816 0.99316 1.22468 0.87279 0.97304 0.95597 0.90440 1.60701 1.17124 1.20219 1.32618 1.22562 0.96761 0.86551 0.96463 0.91042 1.23291 0.99090 0.99947 0.97134 1.22186 0.94003 0.95707 1.00747 1.19308 0.92865 0.91676 0.93691 0.95743 1.21291 1.32251 1.06387 0.94988 0.92767 1.24998 0.96296 0.97989 0.94860 1.69970 1.45489 1.28454 1.09115 0.86730 0.80651 0.81042 0.79986 1.20340 1.21428 1.20363 1.22318 0.92076 0.98921 1.00699 1.22529 0.93617 0.97434 1.00905 0.92906 0.92730 0.93093 0.92022 0.92096 0.92034 0.92387 0.92060 0.91810 0.84369 0.92995 0.93822 0.92766 0.93067 0.93169 0.92745 0.93598 0.91223 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.79 37.16 0.36 -0.77 16 2 C -0.12 -0.96 5.33 -26.73 -0.14 -1.11 16 3 C -0.09 -0.91 2.86 -88.96 -0.25 -1.16 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 5 C -0.11 -1.14 5.69 -25.61 -0.15 -1.28 16 6 C -0.15 -1.78 5.99 -25.61 -0.15 -1.93 16 7 C 0.08 1.09 3.19 -66.04 -0.21 0.88 16 8 H 0.08 1.08 7.46 -51.93 -0.39 0.69 16 9 N -0.68 -10.34 6.15 -96.26 -0.59 -10.93 16 10 C 0.09 1.56 3.16 -66.05 -0.21 1.35 16 11 H 0.07 1.34 7.48 -51.93 -0.39 0.96 16 12 C -0.16 -2.91 5.96 -24.74 -0.15 -3.06 16 13 C -0.09 -2.07 5.36 -25.07 -0.13 -2.20 16 14 C 0.04 1.09 2.85 -90.47 -0.26 0.84 16 15 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 16 C -0.51 -14.23 8.38 -34.44 -0.29 -14.52 16 17 H 0.05 1.49 7.33 -52.49 -0.38 1.11 16 18 C 0.06 1.68 5.32 -17.82 -0.09 1.59 16 19 N -0.89 -26.00 12.33 55.43 0.68 -25.31 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.10 -2.17 6.20 -25.43 -0.16 -2.33 16 25 C -0.11 -1.19 6.00 -24.73 -0.15 -1.34 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.41 7.62 -51.93 -0.40 0.01 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.77 7.52 -51.93 -0.39 0.38 16 35 H 0.34 4.95 7.60 -39.29 -0.30 4.65 16 36 H 0.05 0.93 7.81 -51.93 -0.41 0.52 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 1.37 7.93 -51.93 -0.41 0.95 16 39 H 0.05 1.29 7.85 -51.93 -0.41 0.88 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.05 1.20 7.38 -51.93 -0.38 0.81 16 42 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 43 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -27.86 334.75 -10.31 -38.17 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.44 Total: 1.47 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -1.98 Total: -25.04 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.09 Total: -36.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.86 -10.31 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.494 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds