Wall clock time and date at job start Mon Mar 30 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47304 * 2 1 4 4 H 1.08998 * 110.43379 * 52.45834 * 3 2 1 5 5 C 1.54273 * 110.48535 * 289.77649 * 3 2 1 6 6 C 1.53876 * 106.59634 * 217.71386 * 5 3 2 7 7 C 1.54267 * 106.59865 * 359.97438 * 6 5 3 8 8 H 1.09004 * 110.59939 * 264.87932 * 7 6 5 9 9 N 1.46900 * 110.48442 * 142.29251 * 7 6 5 10 10 C 1.46900 * 110.99957 * 90.22443 * 9 7 6 11 11 H 1.09002 * 110.43501 * 34.29827 * 10 9 7 12 12 C 1.54891 * 110.48612 * 271.75565 * 10 9 7 13 13 C 1.54892 * 102.74959 * 203.24978 * 12 10 9 14 14 C 1.54264 * 104.19651 * 37.93955 * 13 12 10 15 15 H 1.09000 * 110.03134 * 95.72352 * 14 13 12 16 16 C 1.50699 * 110.03724 * 217.10934 * 14 13 12 17 17 H 1.07997 * 120.00215 * 118.54492 * 16 14 13 18 18 C 1.37877 * 119.99515 * 298.54788 * 16 14 13 19 19 N 1.31516 * 120.00162 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00029 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46607 * 60.00040 * 20 18 16 22 22 H 1.48498 * 109.47242 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46935 * 300.00466 * 20 18 16 24 24 C 1.54224 * 106.63737 * 336.40572 * 14 13 12 25 25 C 1.54882 * 110.48747 * 175.00032 * 3 2 1 26 26 H 1.09007 * 109.46953 * 300.00256 * 1 2 3 27 27 H 1.09005 * 109.46858 * 59.99679 * 1 2 3 28 28 H 1.08996 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46938 * 239.99800 * 2 1 3 30 30 H 1.08992 * 109.46975 * 120.00051 * 2 1 3 31 31 H 1.09002 * 110.02915 * 336.99295 * 5 3 2 32 32 H 1.08996 * 110.02990 * 98.37682 * 5 3 2 33 33 H 1.09001 * 110.02973 * 240.71525 * 6 5 3 34 34 H 1.08992 * 110.03295 * 119.28287 * 6 5 3 35 35 H 1.00895 * 110.99919 * 326.26996 * 9 7 6 36 36 H 1.09000 * 110.75322 * 321.56253 * 12 10 9 37 37 H 1.09002 * 110.75658 * 84.93452 * 12 10 9 38 38 H 1.08993 * 110.48715 * 156.62375 * 13 12 10 39 39 H 1.09001 * 110.48596 * 279.13315 * 13 12 10 40 40 H 0.97004 * 120.00226 * 180.02562 * 19 18 16 41 41 H 1.08998 * 110.14251 * 240.73074 * 24 14 13 42 42 H 1.09004 * 110.08793 * 119.19319 * 24 14 13 43 43 H 1.09003 * 110.75468 * 38.30726 * 25 3 2 44 44 H 1.09002 * 110.91698 * 275.00983 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0088 0.8099 5 6 1.7590 2.1145 -1.3599 6 6 2.9738 3.0072 -1.6684 7 6 3.9503 2.8470 -0.4849 8 1 3.8010 3.6420 0.2458 9 7 5.3397 2.8431 -0.9617 10 6 5.8918 4.2042 -0.9863 11 1 5.4871 4.7939 -0.1637 12 6 5.5896 4.8873 -2.3432 13 6 6.6929 5.9706 -2.4337 14 6 7.9418 5.2895 -1.8369 15 1 8.5554 4.8703 -2.6343 16 6 8.7425 6.2867 -1.0397 17 1 8.8998 6.1314 0.0174 18 6 9.2742 7.3973 -1.6600 19 7 9.0821 7.5867 -2.9472 20 14 10.2661 8.6339 -0.6717 21 1 11.4454 7.9577 -0.0740 22 1 10.7237 9.7284 -1.5649 23 1 9.4183 9.1979 0.4091 24 6 7.4322 4.1633 -0.9146 25 6 3.5834 1.4718 0.1264 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.6465 1.3563 -2.1349 32 1 0.8554 2.7208 -1.2971 33 1 2.6602 4.0476 -1.7551 34 1 3.4507 2.6823 -2.5930 35 1 5.4092 2.4083 -1.8695 36 1 5.6798 4.1747 -3.1630 37 1 4.5998 5.3439 -2.3339 38 1 6.8699 6.2490 -3.4725 39 1 6.4166 6.8466 -1.8468 40 1 9.4565 8.3679 -3.3836 41 1 7.7632 4.3380 0.1092 42 1 7.7969 3.1980 -1.2657 43 1 4.0334 0.6614 -0.4471 44 1 3.8893 1.4197 1.1714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378855926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:20 Heat of formation + Delta-G solvation = -56.798269 kcal Electronic energy + Delta-G solvation = -18870.873595 eV Core-core repulsion = 16206.222244 eV Total energy + Delta-G solvation = -2664.651351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20736 -38.71290 -35.66337 -34.15859 -32.37939 -29.95128 -29.42685 -28.54779 -26.53562 -25.20845 -23.45149 -21.72910 -21.08814 -20.48993 -20.38334 -18.49091 -17.11976 -16.58966 -16.52182 -16.07896 -15.30316 -15.00002 -14.45666 -14.27764 -14.18523 -14.04058 -13.65401 -13.63909 -13.35792 -12.99659 -12.74311 -12.67674 -12.47659 -12.26612 -12.14295 -11.99222 -11.68202 -11.64195 -11.48662 -11.43840 -11.28894 -11.25103 -11.22409 -10.91401 -10.74483 -10.45101 -9.13231 -8.10787 -6.20435 1.40486 1.41979 1.49568 2.43693 3.17685 3.26338 3.72952 3.79006 3.95174 4.06056 4.14121 4.27289 4.37283 4.37396 4.49040 4.62320 4.72366 4.74162 4.77185 4.81043 4.88364 4.89844 4.96486 5.03660 5.06648 5.09954 5.15890 5.17643 5.25347 5.27345 5.32591 5.35269 5.37715 5.44790 5.51206 5.55513 5.65043 5.68441 5.94994 5.99833 6.29812 6.43523 6.61092 6.91622 7.46510 8.97543 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.056753 B = 0.003734 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.248519 B = 7496.662529 C = 7680.345132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.089 4.089 4 H 0.073 0.927 5 C -0.110 4.110 6 C -0.149 4.149 7 C 0.081 3.919 8 H 0.069 0.931 9 N -0.676 5.676 10 C 0.102 3.898 11 H 0.068 0.932 12 C -0.138 4.138 13 C -0.081 4.081 14 C 0.035 3.965 15 H -0.009 1.009 16 C -0.531 4.531 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.921 5.921 20 Si 0.952 3.048 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.270 1.270 24 C -0.094 4.094 25 C -0.102 4.102 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.343 0.657 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.259 0.741 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.788 -12.987 4.189 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.108 4.108 4 H 0.091 0.909 5 C -0.148 4.148 6 C -0.188 4.188 7 C -0.030 4.030 8 H 0.087 0.913 9 N -0.305 5.305 10 C -0.008 4.008 11 H 0.086 0.914 12 C -0.177 4.177 13 C -0.119 4.119 14 C 0.017 3.983 15 H 0.010 0.990 16 C -0.569 4.569 17 H 0.070 0.930 18 C -0.189 4.189 19 N -0.560 5.560 20 Si 0.778 3.222 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.133 4.133 25 C -0.140 4.140 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.467 -13.028 4.677 21.512 hybrid contribution 0.508 1.519 -0.656 1.731 sum -15.959 -11.509 4.022 20.083 Atomic orbital electron populations 1.21779 0.95404 1.01803 1.01877 1.21528 0.96184 0.95332 1.02032 1.21988 0.94816 0.96564 0.97410 0.90851 1.22118 0.97109 0.98376 0.97211 1.22871 0.97444 0.99964 0.98540 1.22544 0.86113 0.98271 0.96032 0.91264 1.60625 1.18887 1.17970 1.33057 1.22243 0.94547 0.88183 0.95847 0.91385 1.23155 0.98056 0.98488 0.97999 1.21958 0.95282 0.96298 0.98410 1.19317 0.93010 0.92626 0.93384 0.99047 1.21665 1.32828 1.07271 0.95182 0.93025 1.25788 0.97394 0.99886 0.95869 1.70100 1.46362 1.29006 1.10543 0.85704 0.79258 0.78632 0.78646 1.19670 1.21000 1.19563 1.22156 0.94514 0.97610 0.98973 1.22482 0.94905 0.96096 1.00515 0.92756 0.92677 0.92358 0.91991 0.91890 0.91329 0.91651 0.92629 0.91953 0.83720 0.91761 0.91952 0.95292 0.95277 0.93197 0.93717 0.92868 0.91264 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.79 71.98 0.70 -1.17 16 2 C -0.11 -1.61 5.33 30.60 0.16 -1.44 16 3 C -0.09 -1.48 2.86 -9.72 -0.03 -1.51 16 4 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 5 C -0.11 -1.89 5.69 31.32 0.18 -1.71 16 6 C -0.15 -3.16 5.99 31.32 0.19 -2.97 16 7 C 0.08 1.94 3.19 46.00 0.15 2.08 16 8 H 0.07 1.81 7.46 -2.38 -0.02 1.79 16 9 N -0.68 -19.47 6.15 -458.47 -2.82 -22.28 16 10 C 0.10 3.60 3.16 45.99 0.15 3.75 16 11 H 0.07 2.49 7.48 -2.39 -0.02 2.47 16 12 C -0.14 -5.03 5.96 31.89 0.19 -4.84 16 13 C -0.08 -3.89 5.36 31.67 0.17 -3.72 16 14 C 0.04 1.84 2.85 -10.70 -0.03 1.81 16 15 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 16 C -0.53 -30.23 8.38 25.60 0.21 -30.01 16 17 H 0.05 2.89 7.33 -2.91 -0.02 2.87 16 18 C 0.01 0.52 5.32 84.65 0.45 0.97 16 19 N -0.92 -54.95 12.33 21.45 0.26 -54.68 16 20 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 C -0.09 -4.01 6.20 31.44 0.19 -3.82 16 25 C -0.10 -2.07 6.00 31.89 0.19 -1.87 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.05 0.68 7.62 -2.38 -0.02 0.66 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.89 7.95 -2.39 -0.02 0.87 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.10 7.71 -2.39 -0.02 1.08 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.35 7.52 -2.39 -0.02 1.33 16 35 H 0.34 9.36 7.60 -89.70 -0.68 8.67 16 36 H 0.06 2.20 7.81 -2.39 -0.02 2.18 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.03 1.49 7.93 -2.39 -0.02 1.48 16 39 H 0.03 1.49 7.85 -2.39 -0.02 1.47 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.04 1.97 7.38 -2.39 -0.02 1.95 16 42 H 0.05 2.15 8.04 -2.38 -0.02 2.13 16 43 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -60.25 334.75 2.60 -57.65 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.25 Total: 17.07 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 2.88 Total: -44.47 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.55 Total: -76.97 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -60.25 2.60 -57.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.847 kcal (2) G-P(sol) polarization free energy of solvation -60.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds