Wall clock time and date at job start Mon Mar 30 2020 07:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.09002 * 109.46917 * 57.61324 * 3 2 1 5 5 C 1.50703 * 109.46932 * 177.61086 * 3 2 1 6 6 H 1.07998 * 119.99741 * 119.99843 * 5 3 2 7 7 C 1.37870 * 119.99980 * 300.00178 * 5 3 2 8 8 N 1.31517 * 120.00240 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00109 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46890 * 59.99621 * 9 7 5 11 11 H 1.48499 * 109.47477 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47312 * 300.00238 * 9 7 5 13 13 N 1.46901 * 109.47595 * 297.61224 * 3 2 1 14 14 C 1.46904 * 110.99567 * 299.10735 * 13 3 2 15 15 C 1.46891 * 111.00090 * 175.15114 * 13 3 2 16 16 H 1.09001 * 109.47461 * 64.74560 * 15 13 3 17 17 C 1.53006 * 109.46999 * 184.74279 * 15 13 3 18 18 C 1.52997 * 109.47063 * 120.00149 * 17 15 13 19 19 C 1.52991 * 109.47516 * 60.00190 * 18 17 15 20 20 C 1.53006 * 109.46800 * 299.99971 * 19 18 17 21 21 C 1.52998 * 109.47311 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.47115 * 300.00410 * 21 20 19 23 23 C 1.52994 * 109.47178 * 59.99799 * 22 21 20 24 24 H 1.09002 * 109.46852 * 185.07467 * 1 2 3 25 25 H 1.08994 * 109.47115 * 305.07934 * 1 2 3 26 26 H 1.09006 * 109.46900 * 65.07640 * 1 2 3 27 27 H 1.08999 * 109.46948 * 240.00408 * 2 1 3 28 28 H 1.08990 * 109.46994 * 120.00179 * 2 1 3 29 29 H 0.97002 * 120.00149 * 180.02562 * 8 7 5 30 30 H 1.08992 * 109.47058 * 301.31560 * 14 13 3 31 31 H 1.08999 * 109.47531 * 61.32677 * 14 13 3 32 32 H 1.09008 * 109.46703 * 181.31852 * 14 13 3 33 33 H 1.09003 * 109.47102 * 359.97438 * 17 15 13 34 34 H 1.09004 * 109.46945 * 240.00098 * 17 15 13 35 35 H 1.09007 * 109.46879 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47700 * 59.99711 * 19 18 17 37 37 H 1.08995 * 109.47690 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47131 * 239.99675 * 20 19 18 39 39 H 1.09000 * 109.47254 * 119.99788 * 20 19 18 40 40 H 1.08995 * 109.47178 * 179.97438 * 21 20 19 41 41 H 1.08992 * 109.46981 * 299.99602 * 22 21 20 42 42 H 1.09005 * 109.46889 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47375 * 239.99787 * 23 22 21 44 44 H 1.09008 * 109.47291 * 120.00019 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6421 1.9685 0.8678 5 6 3.5459 1.4430 0.0592 6 1 4.1174 1.8994 -0.7354 7 6 4.1939 0.8605 1.1277 8 7 3.4979 0.3041 2.0951 9 14 6.0604 0.8604 1.2008 10 1 6.5559 2.2604 1.2004 11 1 6.5073 0.1770 2.4412 12 1 6.6022 0.1433 0.0185 13 7 1.5980 2.1183 -1.2272 14 6 2.1339 1.4478 -2.4194 15 6 1.9713 3.5388 -1.2096 16 1 3.0575 3.6293 -1.2169 17 6 1.3934 4.2333 -2.4444 18 6 0.4501 5.3546 -2.0043 19 6 1.2240 6.3713 -1.1628 20 6 1.8018 5.6768 0.0720 21 6 1.4126 4.1973 0.0540 22 6 -0.1121 4.0709 0.0645 23 6 -0.6899 4.7653 -1.1703 24 1 -0.3633 -1.0237 0.0909 25 1 -0.3633 0.5906 0.8410 26 1 -0.3633 0.4331 -0.9320 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9539 -0.1053 2.8470 30 1 3.2229 1.4415 -2.3740 31 1 1.7657 0.4226 -2.4562 32 1 1.8106 1.9821 -3.3129 33 1 0.8424 3.5089 -3.0442 34 1 2.2052 4.6536 -3.0382 35 1 0.0381 5.8491 -2.8840 36 1 2.0358 6.7916 -1.7565 37 1 0.5519 7.1699 -0.8489 38 1 1.4042 6.1459 0.9721 39 1 2.8881 5.7672 0.0648 40 1 1.8247 3.7025 0.9335 41 1 -0.5094 4.5401 0.9644 42 1 -0.3894 3.0168 0.0512 43 1 -1.3617 5.5644 -0.8568 44 1 -1.2417 4.0410 -1.7697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382103623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:18 Heat of formation + Delta-G solvation = -17.159753 kcal Electronic energy + Delta-G solvation = -20748.410906 eV Core-core repulsion = 18085.478410 eV Total energy + Delta-G solvation = -2662.932496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11120 -36.51616 -32.74028 -31.29113 -30.92932 -30.34617 -28.50591 -26.76997 -24.58540 -22.83968 -22.06094 -21.32739 -20.65625 -18.81910 -16.64344 -16.04367 -15.60968 -15.58752 -15.12689 -14.56334 -13.72968 -13.18594 -13.00244 -12.69487 -12.17250 -11.92962 -11.74890 -11.69689 -11.60224 -11.49817 -11.39238 -11.31004 -11.01821 -10.89208 -10.85438 -10.66115 -10.42811 -10.28083 -9.91996 -9.66768 -9.48530 -9.33256 -9.22398 -9.14185 -8.86145 -8.28153 -6.98371 -5.93821 -4.06701 3.28986 3.34364 3.37086 4.42440 4.96812 5.02894 5.14556 5.28971 5.36377 5.71723 5.74050 5.83385 5.85790 5.88930 5.91326 6.03351 6.06640 6.17050 6.24365 6.32858 6.36313 6.41083 6.48935 6.51500 6.57218 6.59452 6.69062 6.71079 6.77924 6.87438 6.92849 6.98654 7.06301 7.16386 7.19097 7.26208 7.43163 7.70404 7.81716 8.07443 8.25190 8.43141 8.56439 9.04177 9.60159 11.04510 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.008581 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.421297 B = 3262.245466 C = 3731.623078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.211 3.789 4 H 0.046 0.954 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.883 3.117 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.529 5.529 14 C 0.029 3.971 15 C 0.103 3.897 16 H 0.039 0.961 17 C -0.110 4.110 18 C -0.081 4.081 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.078 4.078 22 C -0.103 4.103 23 C -0.104 4.104 24 H 0.023 0.977 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.090 0.910 29 H 0.260 0.740 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 7.669 -5.781 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C 0.104 3.896 4 H 0.064 0.936 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.525 5.525 9 Si 0.711 3.289 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.253 5.253 14 C -0.119 4.119 15 C -0.006 4.006 16 H 0.057 0.943 17 C -0.148 4.148 18 C -0.100 4.100 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.096 4.096 22 C -0.141 4.141 23 C -0.141 4.141 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.360 7.532 -5.617 11.346 hybrid contribution 2.140 -0.023 0.134 2.144 sum -4.221 7.509 -5.483 10.211 Atomic orbital electron populations 1.21699 0.98941 0.98193 1.00494 1.21625 0.92096 0.99520 1.01892 1.19344 0.92350 0.90678 0.87204 0.93629 1.21696 0.92962 1.36976 1.06121 0.92866 1.24878 0.97617 0.95198 0.95655 1.69862 1.34891 1.37796 1.09920 0.86808 0.86680 0.78119 0.77270 1.20453 1.21311 1.20482 1.62588 1.58202 1.00695 1.03836 1.22225 0.98272 0.98662 0.92780 1.21280 0.96874 0.89223 0.93204 0.94315 1.21751 0.98095 0.97012 0.97906 1.20986 0.95991 0.95816 0.97202 1.21536 0.98984 0.97322 0.97002 1.21531 1.00181 0.96218 0.97135 1.21048 0.95508 0.93928 0.99157 1.21390 0.95187 1.01525 0.95977 1.21445 0.96584 0.98832 0.97261 0.95814 0.94216 0.93540 0.94964 0.89200 0.92957 0.95348 0.92401 0.94061 0.91181 0.93390 0.92437 0.92782 0.92848 0.92634 0.92445 0.89833 0.93753 0.90471 0.93431 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.71 37.16 0.36 -2.37 16 2 C -0.11 -2.64 4.97 -26.73 -0.13 -2.78 16 3 C 0.21 4.99 1.39 -68.86 -0.10 4.90 16 4 H 0.05 1.19 5.94 -51.93 -0.31 0.88 16 5 C -0.54 -14.13 7.09 -34.44 -0.24 -14.37 16 6 H 0.05 1.43 5.82 -52.49 -0.31 1.12 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.65 11.30 55.43 0.63 -24.03 16 9 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.53 -10.75 3.22 -228.26 -0.74 -11.49 16 14 C 0.03 0.57 8.63 60.07 0.52 1.09 16 15 C 0.10 1.95 1.57 -67.69 -0.11 1.84 16 16 H 0.04 0.84 6.92 -51.93 -0.36 0.48 16 17 C -0.11 -1.74 4.79 -26.73 -0.13 -1.87 16 18 C -0.08 -1.14 3.19 -90.60 -0.29 -1.43 16 19 C -0.11 -1.51 5.71 -26.73 -0.15 -1.66 16 20 C -0.11 -1.76 5.71 -26.73 -0.15 -1.91 16 21 C -0.08 -1.41 2.21 -90.60 -0.20 -1.61 16 22 C -0.10 -1.71 5.54 -26.73 -0.15 -1.86 16 23 C -0.10 -1.49 5.71 -26.71 -0.15 -1.64 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.89 7.83 -51.93 -0.41 0.49 16 27 H 0.03 0.75 6.33 -51.93 -0.33 0.42 16 28 H 0.09 2.37 6.01 -51.93 -0.31 2.05 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.60 6.37 -51.93 -0.33 0.27 16 31 H 0.06 1.13 6.34 -51.93 -0.33 0.80 16 32 H 0.04 0.70 6.19 -51.92 -0.32 0.38 16 33 H 0.07 1.13 6.34 -51.93 -0.33 0.80 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.80 6.23 -51.93 -0.32 1.48 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.42 7.59 -51.93 -0.39 1.03 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -26.21 312.67 -9.27 -35.48 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.83 Total: 1.12 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -1.02 Total: -21.92 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.11 Total: -35.52 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.21 -9.27 -35.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382103623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.320 kcal (2) G-P(sol) polarization free energy of solvation -26.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds