Wall clock time and date at job start Mon Mar 30 2020 07:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.09002 * 109.46917 * 57.61324 * 3 2 1 5 5 C 1.50703 * 109.46932 * 177.61086 * 3 2 1 6 6 H 1.07998 * 119.99741 * 119.99843 * 5 3 2 7 7 C 1.37870 * 119.99980 * 300.00178 * 5 3 2 8 8 N 1.31517 * 120.00240 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00109 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46890 * 59.99621 * 9 7 5 11 11 H 1.48499 * 109.47477 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47312 * 300.00238 * 9 7 5 13 13 N 1.46901 * 109.47595 * 297.61224 * 3 2 1 14 14 C 1.46904 * 110.99567 * 299.10735 * 13 3 2 15 15 C 1.46891 * 111.00090 * 175.15114 * 13 3 2 16 16 H 1.09001 * 109.47461 * 64.74560 * 15 13 3 17 17 C 1.53006 * 109.46999 * 184.74279 * 15 13 3 18 18 C 1.52997 * 109.47063 * 120.00149 * 17 15 13 19 19 C 1.52991 * 109.47516 * 60.00190 * 18 17 15 20 20 C 1.53006 * 109.46800 * 299.99971 * 19 18 17 21 21 C 1.52998 * 109.47311 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.47115 * 300.00410 * 21 20 19 23 23 C 1.52994 * 109.47178 * 59.99799 * 22 21 20 24 24 H 1.09002 * 109.46852 * 185.07467 * 1 2 3 25 25 H 1.08994 * 109.47115 * 305.07934 * 1 2 3 26 26 H 1.09006 * 109.46900 * 65.07640 * 1 2 3 27 27 H 1.08999 * 109.46948 * 240.00408 * 2 1 3 28 28 H 1.08990 * 109.46994 * 120.00179 * 2 1 3 29 29 H 0.97002 * 120.00149 * 180.02562 * 8 7 5 30 30 H 1.08992 * 109.47058 * 301.31560 * 14 13 3 31 31 H 1.08999 * 109.47531 * 61.32677 * 14 13 3 32 32 H 1.09008 * 109.46703 * 181.31852 * 14 13 3 33 33 H 1.09003 * 109.47102 * 359.97438 * 17 15 13 34 34 H 1.09004 * 109.46945 * 240.00098 * 17 15 13 35 35 H 1.09007 * 109.46879 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47700 * 59.99711 * 19 18 17 37 37 H 1.08995 * 109.47690 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47131 * 239.99675 * 20 19 18 39 39 H 1.09000 * 109.47254 * 119.99788 * 20 19 18 40 40 H 1.08995 * 109.47178 * 179.97438 * 21 20 19 41 41 H 1.08992 * 109.46981 * 299.99602 * 22 21 20 42 42 H 1.09005 * 109.46889 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47375 * 239.99787 * 23 22 21 44 44 H 1.09008 * 109.47291 * 120.00019 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6421 1.9685 0.8678 5 6 3.5459 1.4430 0.0592 6 1 4.1174 1.8994 -0.7354 7 6 4.1939 0.8605 1.1277 8 7 3.4979 0.3041 2.0951 9 14 6.0604 0.8604 1.2008 10 1 6.5559 2.2604 1.2004 11 1 6.5073 0.1770 2.4412 12 1 6.6022 0.1433 0.0185 13 7 1.5980 2.1183 -1.2272 14 6 2.1339 1.4478 -2.4194 15 6 1.9713 3.5388 -1.2096 16 1 3.0575 3.6293 -1.2169 17 6 1.3934 4.2333 -2.4444 18 6 0.4501 5.3546 -2.0043 19 6 1.2240 6.3713 -1.1628 20 6 1.8018 5.6768 0.0720 21 6 1.4126 4.1973 0.0540 22 6 -0.1121 4.0709 0.0645 23 6 -0.6899 4.7653 -1.1703 24 1 -0.3633 -1.0237 0.0909 25 1 -0.3633 0.5906 0.8410 26 1 -0.3633 0.4331 -0.9320 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9539 -0.1053 2.8470 30 1 3.2229 1.4415 -2.3740 31 1 1.7657 0.4226 -2.4562 32 1 1.8106 1.9821 -3.3129 33 1 0.8424 3.5089 -3.0442 34 1 2.2052 4.6536 -3.0382 35 1 0.0381 5.8491 -2.8840 36 1 2.0358 6.7916 -1.7565 37 1 0.5519 7.1699 -0.8489 38 1 1.4042 6.1459 0.9721 39 1 2.8881 5.7672 0.0648 40 1 1.8247 3.7025 0.9335 41 1 -0.5094 4.5401 0.9644 42 1 -0.3894 3.0168 0.0512 43 1 -1.3617 5.5644 -0.8568 44 1 -1.2417 4.0410 -1.7697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382103623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:17 Heat of formation + Delta-G solvation = -29.738353 kcal Electronic energy + Delta-G solvation = -20748.956355 eV Core-core repulsion = 18085.478410 eV Total energy + Delta-G solvation = -2663.477945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48660 -38.19902 -34.64115 -33.13034 -32.24025 -31.55161 -29.98282 -28.65123 -26.33254 -24.60941 -23.27164 -22.65342 -22.19087 -20.65031 -18.49140 -17.49369 -17.11934 -17.07879 -16.53839 -16.32191 -15.33177 -14.93617 -14.67865 -14.32337 -13.72449 -13.41754 -13.32112 -13.10928 -13.07527 -12.83943 -12.80829 -12.74156 -12.69720 -12.58517 -12.51636 -12.30956 -12.10810 -11.85323 -11.58591 -11.40338 -11.18588 -11.01692 -10.61981 -10.52481 -10.49747 -10.26859 -8.79959 -7.99058 -6.21314 1.34058 1.35233 1.41934 2.39337 3.17151 3.48474 3.80854 3.90757 4.00836 4.44216 4.52891 4.54365 4.57248 4.59555 4.62906 4.68221 4.73247 4.73565 4.78562 4.81727 4.91279 4.94109 4.96985 5.04826 5.18503 5.19379 5.25038 5.30391 5.35370 5.45277 5.49283 5.52214 5.56855 5.58305 5.61754 5.67802 5.74173 5.79155 5.89329 6.13477 6.29813 6.47650 6.81561 7.02741 7.48524 8.93635 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.008581 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.421297 B = 3262.245466 C = 3731.623078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.109 4.109 3 C 0.221 3.779 4 H 0.017 0.983 5 C -0.544 4.544 6 H 0.042 0.958 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.521 5.521 14 C 0.033 3.967 15 C 0.103 3.897 16 H 0.002 0.998 17 C -0.104 4.104 18 C -0.078 4.078 19 C -0.106 4.106 20 C -0.112 4.112 21 C -0.077 4.077 22 C -0.099 4.099 23 C -0.098 4.098 24 H 0.041 0.959 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.260 0.740 30 H 0.004 0.996 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 9.266 -7.473 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 C 0.114 3.886 4 H 0.035 0.965 5 C -0.583 4.583 6 H 0.060 0.940 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.764 3.236 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.244 5.244 14 C -0.116 4.116 15 C -0.006 4.006 16 H 0.020 0.980 17 C -0.142 4.142 18 C -0.097 4.097 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.096 4.096 22 C -0.137 4.137 23 C -0.136 4.136 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.552 9.135 -7.321 13.932 hybrid contribution 2.531 -0.526 0.680 2.673 sum -5.021 8.610 -6.642 11.977 Atomic orbital electron populations 1.21535 0.96178 0.99363 1.00804 1.21482 0.94519 0.98699 1.00071 1.19057 0.90782 0.90910 0.87883 0.96522 1.21936 0.94521 1.36258 1.05623 0.94009 1.25527 1.01323 0.95267 0.95595 1.69987 1.36120 1.38535 1.10293 0.85943 0.82349 0.77987 0.77321 1.20361 1.20827 1.20151 1.62568 1.57615 1.01457 1.02798 1.22237 0.96711 0.99110 0.93496 1.21344 0.95013 0.88665 0.95584 0.97952 1.21704 0.98821 0.97621 0.96031 1.21021 0.95280 0.95101 0.98273 1.21527 0.99654 0.97499 0.95632 1.21516 0.99612 0.94567 0.99269 1.20964 0.96699 0.95292 0.96674 1.21323 0.93776 1.00576 0.98027 1.21426 0.96944 0.99377 0.95842 0.93989 0.94834 0.92364 0.95314 0.92352 0.93110 0.97728 0.92496 0.90957 0.90901 0.92465 0.89415 0.91835 0.90474 0.91686 0.93820 0.94745 0.93061 0.92892 0.91040 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.71 71.98 0.70 -4.16 16 2 C -0.11 -5.24 4.97 30.60 0.15 -5.09 16 3 C 0.22 10.90 1.39 44.17 0.06 10.96 16 4 H 0.02 0.94 5.94 -2.39 -0.01 0.92 16 5 C -0.54 -29.75 7.09 25.60 0.18 -29.57 16 6 H 0.04 2.34 5.82 -2.91 -0.02 2.32 16 7 C 0.02 1.25 5.30 84.65 0.45 1.70 16 8 N -0.91 -52.51 11.30 21.45 0.24 -52.27 16 9 Si 0.94 44.51 29.54 68.60 2.03 46.54 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.52 -21.43 3.22 -876.08 -2.82 -24.26 16 14 C 0.03 1.28 8.63 127.69 1.10 2.38 16 15 C 0.10 3.92 1.57 44.94 0.07 3.99 16 16 H 0.00 0.11 6.92 -2.39 -0.02 0.09 16 17 C -0.10 -3.06 4.79 30.60 0.15 -2.91 16 18 C -0.08 -1.89 3.19 -10.78 -0.03 -1.93 16 19 C -0.11 -2.51 5.71 30.59 0.17 -2.34 16 20 C -0.11 -3.39 5.71 30.60 0.17 -3.21 16 21 C -0.08 -2.86 2.21 -10.78 -0.02 -2.88 16 22 C -0.10 -3.21 5.54 30.59 0.17 -3.05 16 23 C -0.10 -2.50 5.71 30.61 0.17 -2.32 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 2.17 7.83 -2.38 -0.02 2.15 16 27 H 0.03 1.36 6.33 -2.39 -0.02 1.34 16 28 H 0.06 3.19 6.01 -2.39 -0.01 3.17 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.00 0.18 6.37 -2.39 -0.02 0.17 16 31 H 0.06 2.19 6.34 -2.39 -0.02 2.18 16 32 H 0.07 2.34 6.19 -2.38 -0.01 2.32 16 33 H 0.07 2.12 6.34 -2.39 -0.02 2.10 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.03 1.58 6.23 -2.39 -0.01 1.57 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 1.95 7.59 -2.38 -0.02 1.93 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -58.66 312.67 3.89 -54.77 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.95 Total: 13.64 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 3.50 Total: -38.43 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -2.58 Total: -76.52 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -58.66 3.89 -54.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382103623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.036 kcal (2) G-P(sol) polarization free energy of solvation -58.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds