Wall clock time and date at job start Mon Mar 30 2020 07:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46645 * 2 1 4 4 H 1.09009 * 109.46850 * 180.20511 * 3 2 1 5 5 C 1.50699 * 109.47542 * 60.20461 * 3 2 1 6 6 H 1.07991 * 120.00186 * 240.00141 * 5 3 2 7 7 C 1.37882 * 119.99915 * 59.72040 * 5 3 2 8 8 N 1.31523 * 119.99724 * 0.27621 * 7 5 3 9 9 Si 1.86795 * 120.00228 * 180.27961 * 7 5 3 10 10 H 1.48505 * 109.46854 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47457 * 119.99853 * 9 7 5 12 12 H 1.48503 * 109.47168 * 239.99857 * 9 7 5 13 13 N 1.46901 * 109.47639 * 300.20330 * 3 2 1 14 14 C 1.46897 * 111.00402 * 169.88109 * 13 3 2 15 15 C 1.46911 * 110.99576 * 293.83403 * 13 3 2 16 16 H 1.08997 * 109.47336 * 29.33574 * 15 13 3 17 17 C 1.52991 * 109.47076 * 269.32928 * 15 13 3 18 18 C 1.53005 * 109.47310 * 240.00401 * 17 15 13 19 19 C 1.53001 * 109.46839 * 300.00259 * 18 17 15 20 20 C 1.53005 * 109.47282 * 59.99699 * 19 18 17 21 21 C 1.52999 * 109.46476 * 149.33094 * 15 13 3 22 22 C 1.52995 * 109.47614 * 60.00090 * 21 15 13 23 23 C 1.52999 * 109.47230 * 59.99820 * 18 17 15 24 24 H 1.09000 * 109.46841 * 184.53454 * 1 2 3 25 25 H 1.09004 * 109.46825 * 304.52678 * 1 2 3 26 26 H 1.08992 * 109.47549 * 64.53231 * 1 2 3 27 27 H 1.09000 * 109.46959 * 240.00346 * 2 1 3 28 28 H 1.08992 * 109.47488 * 119.99823 * 2 1 3 29 29 H 0.97002 * 119.99513 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47061 * 44.90052 * 14 13 3 31 31 H 1.08996 * 109.47121 * 164.90470 * 14 13 3 32 32 H 1.08998 * 109.46761 * 284.90077 * 14 13 3 33 33 H 1.09004 * 109.47117 * 359.97438 * 17 15 13 34 34 H 1.09000 * 109.47346 * 120.00505 * 17 15 13 35 35 H 1.08993 * 109.47511 * 180.02562 * 18 17 15 36 36 H 1.09009 * 109.46971 * 299.99590 * 19 18 17 37 37 H 1.09000 * 109.47351 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46697 * 239.99758 * 20 19 18 39 39 H 1.09003 * 109.46681 * 120.00397 * 20 19 18 40 40 H 1.09001 * 109.47300 * 299.99520 * 21 15 13 41 41 H 1.08999 * 109.47362 * 179.97438 * 22 21 15 42 42 H 1.08999 * 109.47067 * 299.99812 * 22 21 15 43 43 H 1.09001 * 109.46772 * 60.00191 * 23 18 17 44 44 H 1.08993 * 109.47153 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4426 -0.0037 5 6 1.5417 2.1515 1.2329 6 1 0.9205 3.0296 1.1370 7 6 1.8743 1.6757 2.4836 8 7 2.6309 0.6062 2.6004 9 14 1.2504 2.5499 4.0119 10 1 0.4255 3.7182 3.6118 11 1 0.4254 1.6130 4.8161 12 1 2.4047 3.0139 4.8228 13 7 1.5462 2.1365 -1.1969 14 6 1.8106 3.5792 -1.1157 15 6 2.1298 1.5622 -2.4167 16 1 2.3499 0.5074 -2.2523 17 6 3.4218 2.3050 -2.7625 18 6 3.2899 2.9399 -4.1483 19 6 3.0362 1.8465 -5.1881 20 6 1.7441 1.1037 -4.8422 21 6 1.1364 1.7018 -3.5719 22 6 0.8273 3.1823 -3.8027 23 6 2.1194 3.9252 -4.1485 24 1 -0.3633 -1.0245 0.0812 25 1 -0.3633 0.5825 0.8467 26 1 -0.3634 0.4419 -0.9277 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.8651 0.2716 3.4803 30 1 2.8304 3.7426 -0.7674 31 1 1.6872 4.0273 -2.1016 32 1 1.1103 4.0381 -0.4178 33 1 3.6022 3.0843 -2.0220 34 1 4.2557 1.6030 -2.7624 35 1 4.2105 3.4687 -4.3949 36 1 3.8702 1.1445 -5.1880 37 1 2.9426 2.2987 -6.1754 38 1 1.9644 0.0489 -4.6779 39 1 1.0365 1.2031 -5.6653 40 1 0.2159 1.1726 -3.3255 41 1 0.1199 3.2818 -4.6259 42 1 0.3943 3.6085 -2.8977 43 1 2.3001 4.7041 -3.4077 44 1 2.0251 4.3772 -5.1358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382103624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:20 Heat of formation + Delta-G solvation = 4.863400 kcal Electronic energy + Delta-G solvation = -20666.964605 eV Core-core repulsion = 18004.987105 eV Total energy + Delta-G solvation = -2661.977500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64437 -36.36699 -32.93884 -31.29252 -30.96373 -30.57099 -28.86208 -26.09532 -25.09361 -22.85188 -22.26362 -21.42380 -21.03604 -18.75713 -16.32336 -16.09560 -15.93345 -15.85672 -15.31943 -14.60945 -13.72403 -13.45487 -12.98469 -12.69847 -12.21625 -12.03688 -11.91799 -11.82230 -11.78326 -11.65887 -11.59219 -11.31744 -11.06110 -10.91001 -10.72767 -10.50879 -10.27232 -10.05872 -9.93810 -9.78112 -9.56783 -9.49403 -9.23244 -9.12464 -8.66521 -8.36253 -6.94668 -5.96188 -3.99002 3.31019 3.39365 3.43147 4.44141 4.83009 4.87516 4.95801 5.26024 5.36311 5.52658 5.58129 5.66009 5.67794 5.68920 5.71150 5.77660 5.87672 5.95906 6.08282 6.16830 6.29835 6.33338 6.41386 6.46782 6.52032 6.59088 6.61116 6.64358 6.69826 6.77879 6.83976 6.87922 6.95732 6.97842 7.23959 7.43758 7.53207 7.75466 7.85666 7.90466 8.27369 8.44585 8.72835 9.07977 9.64990 11.10370 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.033569 B = 0.006819 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.901475 B = 4105.003218 C = 4335.733284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C 0.216 3.784 4 H -0.005 1.005 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.525 5.525 14 C 0.016 3.984 15 C 0.087 3.913 16 H 0.072 0.928 17 C -0.152 4.152 18 C -0.081 4.081 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.070 4.070 22 C -0.118 4.118 23 C -0.116 4.116 24 H 0.013 0.987 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.012 0.988 28 H 0.089 0.911 29 H 0.258 0.742 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 3.030 -13.125 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.147 4.147 3 C 0.110 3.890 4 H 0.013 0.987 5 C -0.535 4.535 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.248 5.248 14 C -0.131 4.131 15 C -0.022 4.022 16 H 0.091 0.909 17 C -0.191 4.191 18 C -0.100 4.100 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.089 4.089 22 C -0.155 4.155 23 C -0.153 4.153 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.950 2.847 -12.978 13.321 hybrid contribution 0.715 0.415 1.009 1.305 sum -0.235 3.262 -11.969 12.408 Atomic orbital electron populations 1.21446 0.97384 0.97376 1.01403 1.21539 0.95151 0.98332 0.99649 1.19293 0.92626 0.90961 0.86123 0.98703 1.21198 1.30791 1.11706 0.89786 0.91946 1.24908 0.95326 0.95082 0.98869 1.69901 1.37243 1.22898 1.23182 0.86559 0.78537 0.79694 0.83331 1.19828 1.21114 1.21297 1.62236 1.58137 1.02383 1.02089 1.22791 0.98842 0.90591 1.00905 1.21653 0.90976 0.98662 0.90956 0.90941 1.22421 0.99153 1.00829 0.96703 1.20970 0.97518 0.95883 0.95595 1.21521 0.97815 0.97583 0.97895 1.21539 0.96683 0.99237 0.97655 1.20955 0.98718 0.95618 0.93611 1.21688 0.96414 0.95945 1.01461 1.21649 0.95429 0.97756 1.00466 0.96833 0.92367 0.94044 0.96975 0.89298 0.93198 0.96290 0.91106 0.92206 0.90286 0.92959 0.92246 0.92550 0.92753 0.92388 0.92567 0.91034 0.93299 0.89950 0.91718 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.16 0.35 -2.30 16 2 C -0.11 -2.61 5.33 -26.73 -0.14 -2.75 16 3 C 0.22 5.32 1.64 -68.87 -0.11 5.21 16 4 H 0.00 -0.13 8.12 -51.92 -0.42 -0.55 16 5 C -0.50 -13.25 6.66 -34.44 -0.23 -13.48 16 6 H 0.06 1.68 6.17 -52.49 -0.32 1.36 16 7 C 0.06 1.61 5.30 -17.81 -0.09 1.52 16 8 N -0.89 -25.34 11.31 55.43 0.63 -24.71 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.53 -10.83 3.63 -228.30 -0.83 -11.66 16 14 C 0.02 0.31 6.61 60.06 0.40 0.71 16 15 C 0.09 1.55 2.19 -67.71 -0.15 1.40 16 16 H 0.07 1.42 5.82 -51.93 -0.30 1.12 16 17 C -0.15 -2.50 5.07 -26.73 -0.14 -2.64 16 18 C -0.08 -1.09 3.20 -90.62 -0.29 -1.38 16 19 C -0.11 -1.36 5.71 -26.73 -0.15 -1.52 16 20 C -0.11 -1.47 5.71 -26.73 -0.15 -1.62 16 21 C -0.07 -1.06 2.91 -90.62 -0.26 -1.33 16 22 C -0.12 -1.65 5.10 -26.73 -0.14 -1.79 16 23 C -0.12 -1.50 5.16 -26.73 -0.14 -1.64 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 1.41 7.07 -51.93 -0.37 1.04 16 26 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 27 H 0.01 0.27 6.27 -51.93 -0.33 -0.06 16 28 H 0.09 2.39 6.05 -51.93 -0.31 2.08 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.02 0.39 6.47 -51.93 -0.34 0.05 16 31 H 0.07 1.16 1.99 -51.93 -0.10 1.06 16 32 H 0.06 1.23 6.64 -51.93 -0.34 0.88 16 33 H 0.08 1.41 4.89 -51.93 -0.25 1.16 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.28 5.65 -51.93 -0.29 0.99 16 43 H 0.06 0.85 6.46 -51.93 -0.34 0.52 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -27.14 304.97 -9.36 -36.50 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.49 Total: 0.56 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.24 Total: -21.59 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.20 Total: -36.37 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.14 -9.36 -36.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382103624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.364 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds