Wall clock time and date at job start Mon Mar 30 2020 07:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46645 * 2 1 4 4 H 1.09009 * 109.46850 * 180.20511 * 3 2 1 5 5 C 1.50699 * 109.47542 * 60.20461 * 3 2 1 6 6 H 1.07991 * 120.00186 * 240.00141 * 5 3 2 7 7 C 1.37882 * 119.99915 * 59.72040 * 5 3 2 8 8 N 1.31523 * 119.99724 * 0.27621 * 7 5 3 9 9 Si 1.86795 * 120.00228 * 180.27961 * 7 5 3 10 10 H 1.48505 * 109.46854 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47457 * 119.99853 * 9 7 5 12 12 H 1.48503 * 109.47168 * 239.99857 * 9 7 5 13 13 N 1.46901 * 109.47639 * 300.20330 * 3 2 1 14 14 C 1.46897 * 111.00402 * 169.88109 * 13 3 2 15 15 C 1.46911 * 110.99576 * 293.83403 * 13 3 2 16 16 H 1.08997 * 109.47336 * 29.33574 * 15 13 3 17 17 C 1.52991 * 109.47076 * 269.32928 * 15 13 3 18 18 C 1.53005 * 109.47310 * 240.00401 * 17 15 13 19 19 C 1.53001 * 109.46839 * 300.00259 * 18 17 15 20 20 C 1.53005 * 109.47282 * 59.99699 * 19 18 17 21 21 C 1.52999 * 109.46476 * 149.33094 * 15 13 3 22 22 C 1.52995 * 109.47614 * 60.00090 * 21 15 13 23 23 C 1.52999 * 109.47230 * 59.99820 * 18 17 15 24 24 H 1.09000 * 109.46841 * 184.53454 * 1 2 3 25 25 H 1.09004 * 109.46825 * 304.52678 * 1 2 3 26 26 H 1.08992 * 109.47549 * 64.53231 * 1 2 3 27 27 H 1.09000 * 109.46959 * 240.00346 * 2 1 3 28 28 H 1.08992 * 109.47488 * 119.99823 * 2 1 3 29 29 H 0.97002 * 119.99513 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47061 * 44.90052 * 14 13 3 31 31 H 1.08996 * 109.47121 * 164.90470 * 14 13 3 32 32 H 1.08998 * 109.46761 * 284.90077 * 14 13 3 33 33 H 1.09004 * 109.47117 * 359.97438 * 17 15 13 34 34 H 1.09000 * 109.47346 * 120.00505 * 17 15 13 35 35 H 1.08993 * 109.47511 * 180.02562 * 18 17 15 36 36 H 1.09009 * 109.46971 * 299.99590 * 19 18 17 37 37 H 1.09000 * 109.47351 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46697 * 239.99758 * 20 19 18 39 39 H 1.09003 * 109.46681 * 120.00397 * 20 19 18 40 40 H 1.09001 * 109.47300 * 299.99520 * 21 15 13 41 41 H 1.08999 * 109.47362 * 179.97438 * 22 21 15 42 42 H 1.08999 * 109.47067 * 299.99812 * 22 21 15 43 43 H 1.09001 * 109.46772 * 60.00191 * 23 18 17 44 44 H 1.08993 * 109.47153 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4426 -0.0037 5 6 1.5417 2.1515 1.2329 6 1 0.9205 3.0296 1.1370 7 6 1.8743 1.6757 2.4836 8 7 2.6309 0.6062 2.6004 9 14 1.2504 2.5499 4.0119 10 1 0.4255 3.7182 3.6118 11 1 0.4254 1.6130 4.8161 12 1 2.4047 3.0139 4.8228 13 7 1.5462 2.1365 -1.1969 14 6 1.8106 3.5792 -1.1157 15 6 2.1298 1.5622 -2.4167 16 1 2.3499 0.5074 -2.2523 17 6 3.4218 2.3050 -2.7625 18 6 3.2899 2.9399 -4.1483 19 6 3.0362 1.8465 -5.1881 20 6 1.7441 1.1037 -4.8422 21 6 1.1364 1.7018 -3.5719 22 6 0.8273 3.1823 -3.8027 23 6 2.1194 3.9252 -4.1485 24 1 -0.3633 -1.0245 0.0812 25 1 -0.3633 0.5825 0.8467 26 1 -0.3634 0.4419 -0.9277 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.8651 0.2716 3.4803 30 1 2.8304 3.7426 -0.7674 31 1 1.6872 4.0273 -2.1016 32 1 1.1103 4.0381 -0.4178 33 1 3.6022 3.0843 -2.0220 34 1 4.2557 1.6030 -2.7624 35 1 4.2105 3.4687 -4.3949 36 1 3.8702 1.1445 -5.1880 37 1 2.9426 2.2987 -6.1754 38 1 1.9644 0.0489 -4.6779 39 1 1.0365 1.2031 -5.6653 40 1 0.2159 1.1726 -3.3255 41 1 0.1199 3.2818 -4.6259 42 1 0.3943 3.6085 -2.8977 43 1 2.3001 4.7041 -3.4077 44 1 2.0251 4.3772 -5.1358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382103624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:19 Heat of formation + Delta-G solvation = -9.052074 kcal Electronic energy + Delta-G solvation = -20667.568025 eV Core-core repulsion = 18004.987105 eV Total energy + Delta-G solvation = -2662.580920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92781 -38.05961 -34.78841 -32.99723 -32.21463 -31.85438 -30.32164 -27.98869 -26.83581 -24.61266 -23.31105 -22.65728 -22.61065 -20.52260 -18.11082 -17.52722 -17.27062 -17.25808 -16.69083 -16.39820 -15.43885 -15.14259 -14.48724 -14.26416 -13.87839 -13.73238 -13.49580 -13.00742 -12.92456 -12.84435 -12.81279 -12.79305 -12.76460 -12.51060 -12.45312 -12.36630 -11.87499 -11.74312 -11.55555 -11.38839 -11.10535 -10.86643 -10.72142 -10.53432 -10.46631 -10.42445 -8.68630 -8.07383 -6.16747 1.38740 1.41356 1.52009 2.42963 3.20957 3.44537 3.75169 3.81236 3.96323 4.38852 4.42196 4.45036 4.48441 4.52505 4.57319 4.62304 4.65182 4.70639 4.76416 4.77795 4.82082 4.85909 4.93344 5.01080 5.15792 5.17533 5.21670 5.32489 5.34504 5.41907 5.46086 5.52163 5.53253 5.55694 5.63647 5.65969 5.69026 5.77247 5.82982 5.94939 6.32600 6.51918 6.89999 7.00414 7.51391 8.98518 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.033569 B = 0.006819 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.901475 B = 4105.003218 C = 4335.733284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.104 4.104 3 C 0.225 3.775 4 H -0.049 1.049 5 C -0.504 4.504 6 H 0.058 0.942 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.525 5.525 14 C 0.023 3.977 15 C 0.084 3.916 16 H 0.049 0.951 17 C -0.151 4.151 18 C -0.077 4.077 19 C -0.108 4.108 20 C -0.110 4.110 21 C -0.067 4.067 22 C -0.117 4.117 23 C -0.114 4.114 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.022 0.978 28 H 0.058 0.942 29 H 0.258 0.742 30 H 0.000 1.000 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.419 3.997 -15.310 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.142 4.142 3 C 0.118 3.882 4 H -0.031 1.031 5 C -0.542 4.542 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.248 5.248 14 C -0.124 4.124 15 C -0.025 4.025 16 H 0.067 0.933 17 C -0.190 4.190 18 C -0.096 4.096 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.086 4.086 22 C -0.154 4.154 23 C -0.151 4.151 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.019 0.981 31 H 0.123 0.877 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.861 3.820 -15.181 15.764 hybrid contribution 1.035 0.091 1.664 1.962 sum -0.826 3.912 -13.516 14.095 Atomic orbital electron populations 1.21289 0.95713 0.98303 1.00918 1.21403 0.96484 0.97694 0.98623 1.19036 0.89901 0.91760 0.87522 1.03149 1.21417 1.30421 1.11565 0.90841 0.92430 1.25635 0.95573 0.95746 1.01659 1.70040 1.38282 1.24117 1.23695 0.85613 0.78017 0.78787 0.79884 1.19166 1.20749 1.21064 1.62207 1.58054 1.02832 1.01712 1.22808 0.97197 0.89985 1.02442 1.21737 0.92725 0.97249 0.90765 0.93261 1.22362 0.97925 1.00043 0.98631 1.20972 0.98616 0.96415 0.93594 1.21522 0.97326 0.97124 0.98538 1.21526 0.97491 0.98877 0.96864 1.20910 0.97336 0.96912 0.93439 1.21662 0.97500 0.94710 1.01524 1.21648 0.94297 0.97267 1.01907 0.94875 0.94550 0.92917 0.95918 0.92365 0.93255 0.98117 0.87702 0.93719 0.92234 0.93836 0.90857 0.92519 0.90207 0.92857 0.90323 0.92233 0.90959 0.91844 0.92251 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.69 9.52 71.98 0.69 -4.00 16 2 C -0.10 -5.14 5.33 30.59 0.16 -4.97 16 3 C 0.22 11.54 1.64 44.17 0.07 11.61 16 4 H -0.05 -2.88 8.12 -2.38 -0.02 -2.90 16 5 C -0.50 -27.73 6.66 25.60 0.17 -27.56 16 6 H 0.06 3.17 6.17 -2.92 -0.02 3.15 16 7 C 0.01 0.67 5.30 84.65 0.45 1.12 16 8 N -0.92 -53.96 11.31 21.45 0.24 -53.72 16 9 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 N -0.53 -22.13 3.63 -876.21 -3.18 -25.30 16 14 C 0.02 0.91 6.61 127.69 0.84 1.75 16 15 C 0.08 3.02 2.19 44.91 0.10 3.11 16 16 H 0.05 1.98 5.82 -2.39 -0.01 1.96 16 17 C -0.15 -4.94 5.07 30.59 0.15 -4.79 16 18 C -0.08 -1.88 3.20 -10.79 -0.03 -1.91 16 19 C -0.11 -2.27 5.71 30.60 0.17 -2.10 16 20 C -0.11 -2.52 5.71 30.60 0.17 -2.34 16 21 C -0.07 -1.92 2.91 -10.80 -0.03 -1.95 16 22 C -0.12 -2.94 5.10 30.59 0.16 -2.78 16 23 C -0.11 -2.57 5.16 30.60 0.16 -2.41 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.76 7.07 -2.38 -0.02 1.74 16 26 H 0.05 2.20 7.74 -2.39 -0.02 2.18 16 27 H 0.02 1.04 6.27 -2.39 -0.01 1.03 16 28 H 0.06 3.26 6.05 -2.39 -0.01 3.24 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.67 16 30 H 0.00 0.02 6.47 -2.39 -0.02 0.00 16 31 H 0.11 3.38 1.99 -2.39 0.00 3.37 16 32 H 0.04 1.86 6.64 -2.39 -0.02 1.85 16 33 H 0.06 2.18 4.89 -2.39 -0.01 2.17 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.84 5.65 -2.39 -0.01 1.83 16 43 H 0.06 1.41 6.46 -2.39 -0.02 1.39 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -60.11 304.97 3.29 -56.82 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.96 Total: 12.95 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 3.23 Total: -37.21 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -2.93 Total: -79.02 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -60.11 3.29 -56.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382103624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.767 kcal (2) G-P(sol) polarization free energy of solvation -60.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds