Wall clock time and date at job start Mon Mar 30 2020 07:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46958 * 2 1 4 4 H 1.08991 * 109.47126 * 304.99519 * 3 2 1 5 5 C 1.50709 * 109.46767 * 184.99827 * 3 2 1 6 6 H 1.07998 * 120.00098 * 239.99818 * 5 3 2 7 7 C 1.37879 * 119.99973 * 60.00021 * 5 3 2 8 8 N 1.31521 * 119.99737 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00063 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46758 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47115 * 119.99922 * 9 7 5 12 12 H 1.48497 * 109.46837 * 240.00048 * 9 7 5 13 13 N 1.46900 * 109.47179 * 65.00261 * 3 2 1 14 14 C 1.50156 * 111.00203 * 69.87228 * 13 3 2 15 15 C 1.55907 * 106.32238 * 145.82953 * 14 13 3 16 16 C 1.52997 * 110.72541 * 124.15232 * 15 14 13 17 17 C 1.53002 * 110.72386 * 247.43529 * 15 14 13 18 18 C 1.50960 * 102.90976 * 5.79179 * 15 14 13 19 19 H 1.08994 * 110.00858 * 82.54910 * 18 15 14 20 20 C 1.50660 * 124.36554 * 216.20450 * 18 15 14 21 21 C 1.54919 * 104.73967 * 145.77872 * 20 18 15 22 22 C 1.56267 * 105.72015 * 352.18948 * 21 20 18 23 23 C 1.44519 * 110.99609 * 183.75723 * 13 3 2 24 24 H 1.08998 * 109.96123 * 309.29546 * 23 13 3 25 25 H 1.08991 * 109.47421 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47070 * 300.00322 * 1 2 3 27 27 H 1.09006 * 109.47112 * 59.99609 * 1 2 3 28 28 H 1.08999 * 109.47070 * 239.99677 * 2 1 3 29 29 H 1.08997 * 109.46560 * 120.00152 * 2 1 3 30 30 H 0.96999 * 119.99883 * 180.02562 * 8 7 5 31 31 H 1.09000 * 110.08184 * 265.04093 * 14 13 3 32 32 H 1.08998 * 110.08452 * 26.55183 * 14 13 3 33 33 H 1.08997 * 109.47806 * 61.44884 * 16 15 14 34 34 H 1.09003 * 109.46952 * 181.44982 * 16 15 14 35 35 H 1.09004 * 109.46619 * 301.44271 * 16 15 14 36 36 H 1.09002 * 109.47114 * 58.54351 * 17 15 14 37 37 H 1.08996 * 109.47355 * 178.54550 * 17 15 14 38 38 H 1.09003 * 109.47238 * 298.54886 * 17 15 14 39 39 H 1.09001 * 110.46110 * 264.26230 * 20 18 15 40 40 H 1.08994 * 110.46706 * 26.85161 * 20 18 15 41 41 H 1.08993 * 109.82217 * 233.35628 * 21 20 18 42 42 H 1.09001 * 110.72123 * 111.49679 * 21 20 18 43 43 H 1.09000 * 110.95685 * 217.49095 * 22 21 20 44 44 H 1.09000 * 110.98733 * 93.78137 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0051 0.8798 -1.3811 10 1 6.5988 1.5450 -0.1936 11 1 6.4962 -0.5192 -1.4625 12 1 6.4000 1.6155 -2.6091 13 7 1.6514 2.0993 1.2552 14 6 2.4181 1.5361 2.4170 15 6 2.6482 2.7198 3.4052 16 6 2.1027 2.3800 4.7936 17 6 4.1328 3.0826 3.4792 18 6 1.8548 3.8411 2.7791 19 1 0.8040 3.7539 3.0554 20 6 2.2728 5.2885 2.7909 21 6 1.7710 5.8547 1.4390 22 6 1.2571 4.6217 0.6281 23 6 2.0407 3.4910 1.2536 24 1 3.0912 3.5832 0.9777 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.8293 -0.0620 -2.9494 31 1 1.8388 0.7506 2.9023 32 1 3.3748 1.1395 2.0772 33 1 2.6301 1.5118 5.1889 34 1 2.2508 3.2296 5.4602 35 1 1.0382 2.1565 4.7210 36 1 4.4911 3.3512 2.4854 37 1 4.2672 3.9274 4.1545 38 1 4.6978 2.2274 3.8501 39 1 1.7964 5.8159 3.6173 40 1 3.3574 5.3714 2.8593 41 1 2.5946 6.3351 0.9109 42 1 0.9600 6.5659 1.5960 43 1 1.4971 4.7236 -0.4302 44 1 0.1859 4.4795 0.7709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382149962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:45 Heat of formation + Delta-G solvation = -4.507229 kcal Electronic energy + Delta-G solvation = -20610.847671 eV Core-core repulsion = 17948.463830 eV Total energy + Delta-G solvation = -2662.383841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.26384 -35.67282 -34.48797 -32.17813 -30.96962 -27.57661 -27.22745 -26.92672 -25.89320 -24.41110 -22.52738 -20.38558 -19.71112 -18.97717 -17.69793 -16.32244 -15.74063 -14.94517 -14.34970 -13.92390 -13.78582 -13.18079 -13.07180 -12.81775 -12.65564 -12.45485 -12.30625 -11.75834 -11.62568 -11.44359 -11.24520 -11.14836 -10.94614 -10.80585 -10.76337 -10.51958 -10.30389 -10.12156 -9.90703 -9.80847 -9.72442 -9.60928 -9.53009 -9.20057 -8.86862 -8.33792 -7.12791 -5.97566 -4.09485 3.25165 3.34190 3.36651 4.39860 4.60749 5.05351 5.14742 5.27336 5.39218 5.43808 5.48730 5.54384 5.85236 5.91137 5.98669 5.99060 6.07562 6.12777 6.17463 6.33001 6.35075 6.36817 6.40300 6.41971 6.51427 6.52513 6.54840 6.59157 6.72222 6.77053 6.80856 6.97281 7.05409 7.06350 7.15526 7.23356 7.39158 7.65560 7.76679 8.02564 8.17992 8.37930 8.47069 9.01974 9.56770 11.02084 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.008924 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.503339 B = 3136.768205 C = 3398.926540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.202 3.798 4 H 0.037 0.963 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.496 5.496 14 C 0.044 3.956 15 C -0.062 4.062 16 C -0.131 4.131 17 C -0.135 4.135 18 C -0.105 4.105 19 H 0.072 0.928 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.102 4.102 23 C 0.061 3.939 24 H 0.057 0.943 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.353 6.293 9.293 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.055 0.945 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.711 3.289 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.218 5.218 14 C -0.083 4.083 15 C -0.063 4.063 16 C -0.188 4.188 17 C -0.193 4.193 18 C -0.124 4.124 19 H 0.090 0.910 20 C -0.145 4.145 21 C -0.157 4.157 22 C -0.140 4.140 23 C -0.049 4.049 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.932 6.106 9.140 11.376 hybrid contribution 1.980 -0.019 -0.410 2.022 sum -0.953 6.086 8.730 10.685 Atomic orbital electron populations 1.21702 0.98971 0.98299 1.00510 1.21526 0.92162 0.99243 1.01714 1.19415 0.93110 0.91367 0.86617 0.94513 1.21771 0.92853 1.37834 1.05381 0.92118 1.24905 0.97598 0.95151 0.95752 1.69894 1.34580 1.38362 1.09424 0.86683 0.86502 0.77719 0.77994 1.19891 1.21030 1.21087 1.64917 1.51046 1.00930 1.04942 1.23749 0.98836 0.95043 0.90683 1.20816 0.94683 0.95947 0.94809 1.21790 1.00667 1.00425 0.95926 1.21828 0.95347 1.00386 1.01700 1.21975 0.99724 0.92823 0.97889 0.90950 1.21393 1.00721 0.95557 0.96826 1.22685 0.99895 0.97482 0.95617 1.21713 0.99665 0.93852 0.98793 1.22406 0.98508 0.90366 0.93616 0.92565 0.95714 0.93376 0.94351 0.89146 0.95196 0.93027 0.92273 0.90890 0.93187 0.93446 0.92702 0.92208 0.93367 0.93135 0.92762 0.91848 0.92200 0.92282 0.92000 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.58 5.25 -26.73 -0.14 -2.72 16 3 C 0.20 4.94 1.76 -68.86 -0.12 4.82 16 4 H 0.04 1.02 8.13 -51.93 -0.42 0.59 16 5 C -0.54 -14.12 6.47 -34.44 -0.22 -14.35 16 6 H 0.06 1.59 5.51 -52.49 -0.29 1.30 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.50 -10.45 4.74 -215.32 -1.02 -11.47 16 14 C 0.04 0.87 4.73 -0.44 0.00 0.87 16 15 C -0.06 -1.00 0.90 -153.98 -0.14 -1.14 16 16 C -0.13 -1.80 8.41 37.16 0.31 -1.48 16 17 C -0.14 -2.11 7.34 37.16 0.27 -1.84 16 18 C -0.11 -1.70 2.22 -90.30 -0.20 -1.90 16 19 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 20 C -0.11 -1.51 6.27 -26.89 -0.17 -1.68 16 21 C -0.12 -1.67 6.92 -23.96 -0.17 -1.84 16 22 C -0.10 -1.75 6.75 -25.92 -0.17 -1.93 16 23 C 0.06 1.18 1.98 -67.41 -0.13 1.05 16 24 H 0.06 1.23 5.34 -51.93 -0.28 0.96 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 2.41 5.95 -51.93 -0.31 2.11 16 29 H 0.03 0.70 7.38 -51.93 -0.38 0.32 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 31 H 0.06 1.13 7.75 -51.93 -0.40 0.73 16 32 H 0.07 1.60 5.19 -51.93 -0.27 1.34 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.75 8.06 -51.93 -0.42 0.34 16 36 H 0.06 1.05 6.89 -51.93 -0.36 0.69 16 37 H 0.05 0.65 7.62 -51.93 -0.40 0.26 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.89 6.68 -51.93 -0.35 0.54 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -26.63 320.87 -9.24 -35.87 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.05 Total: 1.84 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.61 Total: -22.91 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.39 Total: -35.60 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.63 -9.24 -35.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382149962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.364 kcal (2) G-P(sol) polarization free energy of solvation -26.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds