Wall clock time and date at job start Mon Mar 30 2020 07:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46958 * 2 1 4 4 H 1.08991 * 109.47126 * 304.99519 * 3 2 1 5 5 C 1.50709 * 109.46767 * 184.99827 * 3 2 1 6 6 H 1.07998 * 120.00098 * 239.99818 * 5 3 2 7 7 C 1.37879 * 119.99973 * 60.00021 * 5 3 2 8 8 N 1.31521 * 119.99737 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00063 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46758 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47115 * 119.99922 * 9 7 5 12 12 H 1.48497 * 109.46837 * 240.00048 * 9 7 5 13 13 N 1.46900 * 109.47179 * 65.00261 * 3 2 1 14 14 C 1.50156 * 111.00203 * 69.87228 * 13 3 2 15 15 C 1.55907 * 106.32238 * 145.82953 * 14 13 3 16 16 C 1.52997 * 110.72541 * 124.15232 * 15 14 13 17 17 C 1.53002 * 110.72386 * 247.43529 * 15 14 13 18 18 C 1.50960 * 102.90976 * 5.79179 * 15 14 13 19 19 H 1.08994 * 110.00858 * 82.54910 * 18 15 14 20 20 C 1.50660 * 124.36554 * 216.20450 * 18 15 14 21 21 C 1.54919 * 104.73967 * 145.77872 * 20 18 15 22 22 C 1.56267 * 105.72015 * 352.18948 * 21 20 18 23 23 C 1.44519 * 110.99609 * 183.75723 * 13 3 2 24 24 H 1.08998 * 109.96123 * 309.29546 * 23 13 3 25 25 H 1.08991 * 109.47421 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47070 * 300.00322 * 1 2 3 27 27 H 1.09006 * 109.47112 * 59.99609 * 1 2 3 28 28 H 1.08999 * 109.47070 * 239.99677 * 2 1 3 29 29 H 1.08997 * 109.46560 * 120.00152 * 2 1 3 30 30 H 0.96999 * 119.99883 * 180.02562 * 8 7 5 31 31 H 1.09000 * 110.08184 * 265.04093 * 14 13 3 32 32 H 1.08998 * 110.08452 * 26.55183 * 14 13 3 33 33 H 1.08997 * 109.47806 * 61.44884 * 16 15 14 34 34 H 1.09003 * 109.46952 * 181.44982 * 16 15 14 35 35 H 1.09004 * 109.46619 * 301.44271 * 16 15 14 36 36 H 1.09002 * 109.47114 * 58.54351 * 17 15 14 37 37 H 1.08996 * 109.47355 * 178.54550 * 17 15 14 38 38 H 1.09003 * 109.47238 * 298.54886 * 17 15 14 39 39 H 1.09001 * 110.46110 * 264.26230 * 20 18 15 40 40 H 1.08994 * 110.46706 * 26.85161 * 20 18 15 41 41 H 1.08993 * 109.82217 * 233.35628 * 21 20 18 42 42 H 1.09001 * 110.72123 * 111.49679 * 21 20 18 43 43 H 1.09000 * 110.95685 * 217.49095 * 22 21 20 44 44 H 1.09000 * 110.98733 * 93.78137 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0051 0.8798 -1.3811 10 1 6.5988 1.5450 -0.1936 11 1 6.4962 -0.5192 -1.4625 12 1 6.4000 1.6155 -2.6091 13 7 1.6514 2.0993 1.2552 14 6 2.4181 1.5361 2.4170 15 6 2.6482 2.7198 3.4052 16 6 2.1027 2.3800 4.7936 17 6 4.1328 3.0826 3.4792 18 6 1.8548 3.8411 2.7791 19 1 0.8040 3.7539 3.0554 20 6 2.2728 5.2885 2.7909 21 6 1.7710 5.8547 1.4390 22 6 1.2571 4.6217 0.6281 23 6 2.0407 3.4910 1.2536 24 1 3.0912 3.5832 0.9777 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.8293 -0.0620 -2.9494 31 1 1.8388 0.7506 2.9023 32 1 3.3748 1.1395 2.0772 33 1 2.6301 1.5118 5.1889 34 1 2.2508 3.2296 5.4602 35 1 1.0382 2.1565 4.7210 36 1 4.4911 3.3512 2.4854 37 1 4.2672 3.9274 4.1545 38 1 4.6978 2.2274 3.8501 39 1 1.7964 5.8159 3.6173 40 1 3.3574 5.3714 2.8593 41 1 2.5946 6.3351 0.9109 42 1 0.9600 6.5659 1.5960 43 1 1.4971 4.7236 -0.4302 44 1 0.1859 4.4795 0.7709 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382149962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:45 Heat of formation + Delta-G solvation = -18.463588 kcal Electronic energy + Delta-G solvation = -20611.452864 eV Core-core repulsion = 17948.463830 eV Total energy + Delta-G solvation = -2662.989034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71739 -37.38880 -35.83977 -34.09628 -32.73847 -28.95990 -28.81891 -28.17692 -27.43065 -26.12955 -24.30251 -21.68943 -21.37815 -20.68826 -19.11173 -18.22265 -17.29188 -16.68364 -15.92642 -15.41709 -15.30977 -14.79834 -14.61264 -14.34132 -14.12196 -13.92202 -13.66286 -13.36458 -13.22764 -13.09327 -12.81614 -12.58456 -12.56159 -12.42634 -12.20198 -12.01531 -11.84810 -11.71680 -11.59641 -11.47471 -11.25502 -11.09585 -11.04010 -11.01337 -10.45263 -10.42896 -8.94059 -8.03556 -6.23540 1.32608 1.35837 1.44988 2.38314 3.15123 3.21060 3.63462 3.85733 4.06615 4.17068 4.21845 4.31271 4.54045 4.60786 4.65275 4.71312 4.73505 4.75232 4.86276 4.88558 4.93604 4.95765 5.01100 5.08448 5.15128 5.16604 5.19156 5.21600 5.24274 5.25074 5.36276 5.41464 5.47113 5.50221 5.56315 5.65605 5.67021 5.73472 5.81124 6.07270 6.19615 6.46434 6.61012 7.00552 7.45593 8.92651 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.008924 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.503339 B = 3136.768205 C = 3398.926540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.211 3.789 4 H -0.004 1.004 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.496 5.496 14 C 0.044 3.956 15 C -0.058 4.058 16 C -0.124 4.124 17 C -0.131 4.131 18 C -0.088 4.088 19 H 0.073 0.927 20 C -0.103 4.103 21 C -0.110 4.110 22 C -0.105 4.105 23 C 0.046 3.954 24 H 0.024 0.976 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 7.614 11.733 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.103 3.897 4 H 0.014 0.986 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.768 3.232 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.218 5.218 14 C -0.084 4.084 15 C -0.058 4.058 16 C -0.182 4.182 17 C -0.188 4.188 18 C -0.107 4.107 19 H 0.092 0.908 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.064 4.064 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.083 7.435 11.594 14.114 hybrid contribution 2.003 -0.443 -1.190 2.371 sum -1.080 6.992 10.404 12.582 Atomic orbital electron populations 1.21555 0.96432 0.99707 1.00497 1.21374 0.94401 0.98400 0.99987 1.19134 0.91964 0.91465 0.87127 0.98557 1.21990 0.93928 1.37017 1.05055 0.92628 1.25603 1.01518 0.95196 0.95679 1.70022 1.36039 1.39270 1.09869 0.85760 0.81870 0.77701 0.77884 1.19449 1.20651 1.20918 1.64863 1.51072 1.02025 1.03860 1.23759 0.96969 0.96724 0.90947 1.20808 0.95347 0.94228 0.95462 1.21732 1.00534 1.01695 0.94206 1.21782 0.94780 1.01522 1.00714 1.21956 0.99894 0.94241 0.94576 0.90819 1.21407 1.01101 0.93900 0.97630 1.22655 1.00780 0.96281 0.95065 1.21765 0.99692 0.94789 0.98111 1.22511 0.96968 0.89835 0.97072 0.95784 0.93571 0.92534 0.95080 0.92137 0.95462 0.93107 0.92036 0.93934 0.92573 0.91134 0.92647 0.94993 0.90601 0.92958 0.89774 0.91758 0.92031 0.89628 0.94175 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 9.80 71.98 0.71 -4.50 16 2 C -0.10 -5.09 5.25 30.59 0.16 -4.93 16 3 C 0.21 10.78 1.76 44.17 0.08 10.86 16 4 H 0.00 -0.21 8.13 -2.39 -0.02 -0.22 16 5 C -0.54 -29.48 6.47 25.60 0.17 -29.32 16 6 H 0.06 3.04 5.51 -2.91 -0.02 3.02 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -53.02 11.29 21.45 0.24 -52.78 16 9 Si 0.94 44.17 29.54 68.60 2.03 46.19 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.50 -21.32 4.74 -835.15 -3.96 -25.28 16 14 C 0.04 1.71 4.73 86.67 0.41 2.12 16 15 C -0.06 -1.77 0.90 -51.84 -0.05 -1.81 16 16 C -0.12 -2.99 8.41 71.98 0.61 -2.38 16 17 C -0.13 -3.86 7.34 71.98 0.53 -3.33 16 18 C -0.09 -2.65 2.22 -10.58 -0.02 -2.68 16 19 H 0.07 2.24 7.90 -2.39 -0.02 2.22 16 20 C -0.10 -2.55 6.27 30.49 0.19 -2.36 16 21 C -0.11 -2.84 6.92 32.39 0.22 -2.62 16 22 C -0.11 -3.61 6.75 31.12 0.21 -3.40 16 23 C 0.05 1.80 1.98 46.38 0.09 1.89 16 24 H 0.02 1.10 5.34 -2.39 -0.01 1.09 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 2.24 7.75 -2.39 -0.02 2.23 16 27 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.06 3.36 5.95 -2.39 -0.01 3.35 16 29 H 0.03 1.31 7.38 -2.39 -0.02 1.29 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.06 2.33 7.75 -2.39 -0.02 2.31 16 32 H 0.04 1.92 5.19 -2.39 -0.01 1.91 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.34 8.06 -2.38 -0.02 1.32 16 36 H 0.03 1.11 6.89 -2.39 -0.02 1.09 16 37 H 0.08 1.81 7.62 -2.39 -0.02 1.79 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.61 6.68 -2.39 -0.02 1.59 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -59.69 320.87 3.00 -56.69 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.94 Total: 16.09 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 3.75 Total: -40.93 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -3.71 Total: -78.05 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -59.69 3.00 -56.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382149962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.231 kcal (2) G-P(sol) polarization free energy of solvation -59.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds