Wall clock time and date at job start Mon Mar 30 2020 07:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47270 * 2 1 4 4 H 1.08998 * 109.47208 * 179.14241 * 3 2 1 5 5 C 1.50702 * 109.47014 * 59.13382 * 3 2 1 6 6 H 1.07999 * 119.99961 * 239.99778 * 5 3 2 7 7 C 1.37877 * 119.99739 * 60.00504 * 5 3 2 8 8 N 1.31515 * 119.99799 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99786 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46963 * 60.00324 * 9 7 5 11 11 H 1.48500 * 109.46856 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47257 * 300.00067 * 9 7 5 13 13 N 1.46902 * 109.46809 * 299.13795 * 3 2 1 14 14 C 1.50156 * 111.00082 * 301.60424 * 13 3 2 15 15 C 1.55904 * 106.32501 * 214.17621 * 14 13 3 16 16 C 1.53001 * 110.72631 * 235.84875 * 15 14 13 17 17 C 1.53003 * 110.88152 * 112.62807 * 15 14 13 18 18 C 1.50953 * 102.90998 * 354.20115 * 15 14 13 19 19 H 1.09005 * 110.00629 * 277.47151 * 18 15 14 20 20 C 1.50650 * 124.38916 * 143.80281 * 18 15 14 21 21 C 1.55810 * 104.30628 * 214.42084 * 20 18 15 22 22 C 1.56269 * 105.86850 * 7.02059 * 21 20 18 23 23 C 1.44519 * 110.99794 * 187.71771 * 13 3 2 24 24 H 1.08993 * 109.38972 * 50.91038 * 23 13 3 25 25 H 1.08996 * 109.47186 * 64.47606 * 1 2 3 26 26 H 1.09002 * 109.47372 * 184.47337 * 1 2 3 27 27 H 1.09005 * 109.47084 * 304.47363 * 1 2 3 28 28 H 1.09003 * 109.46542 * 239.99842 * 2 1 3 29 29 H 1.09004 * 109.47100 * 120.00162 * 2 1 3 30 30 H 0.97003 * 119.99521 * 180.02562 * 8 7 5 31 31 H 1.09000 * 110.08617 * 94.96342 * 14 13 3 32 32 H 1.08995 * 110.08692 * 333.39345 * 14 13 3 33 33 H 1.09008 * 109.47029 * 173.49047 * 16 15 14 34 34 H 1.08996 * 109.47570 * 53.48483 * 16 15 14 35 35 H 1.09003 * 109.46776 * 293.48167 * 16 15 14 36 36 H 1.09004 * 109.47138 * 183.96652 * 17 15 14 37 37 H 1.09001 * 109.46506 * 303.96605 * 17 15 14 38 38 H 1.08996 * 109.47194 * 63.96292 * 17 15 14 39 39 H 1.08998 * 110.46126 * 333.12465 * 20 18 15 40 40 H 1.08997 * 110.46628 * 95.71106 * 20 18 15 41 41 H 1.08995 * 110.16995 * 126.12081 * 21 20 18 42 42 H 1.08999 * 110.16843 * 247.91799 * 21 20 18 43 43 H 1.09003 * 110.95609 * 143.00726 * 22 21 20 44 44 H 1.09001 * 110.95386 * 266.69629 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1299 1.4425 0.0154 5 6 1.5203 2.1590 1.2196 6 1 0.9009 3.0366 1.1073 7 6 1.8356 1.6943 2.4788 8 7 2.5895 0.6254 2.6155 9 14 1.1919 2.5829 3.9906 10 1 -0.2930 2.5833 3.9697 11 1 1.6690 1.8886 5.2135 12 1 1.6873 3.9827 3.9904 13 7 1.5675 2.1289 -1.2098 14 6 2.0342 1.4194 -2.4481 15 6 2.2934 2.5257 -3.5156 16 6 1.4831 2.2540 -4.7847 17 6 3.7848 2.6317 -3.8401 18 6 1.8058 3.7782 -2.8285 19 1 0.7243 3.8644 -2.9338 20 6 2.4475 5.1334 -2.9740 21 6 2.2673 5.7969 -1.5758 22 6 1.6789 4.6856 -0.6481 23 6 2.1748 3.4342 -1.3352 24 1 3.2560 3.3416 -1.2327 25 1 -0.3633 0.4428 -0.9273 26 1 -0.3634 -1.0245 0.0802 27 1 -0.3633 0.5817 0.8472 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.8110 0.2983 3.5014 31 1 1.2635 0.7334 -2.7995 32 1 2.9555 0.8744 -2.2425 33 1 1.5884 3.0952 -5.4700 34 1 0.4324 2.1264 -4.5246 35 1 1.8517 1.3469 -5.2637 36 1 3.9480 3.4566 -4.5338 37 1 4.3443 2.8128 -2.9223 38 1 4.1247 1.7015 -4.2952 39 1 3.5059 5.0301 -3.2133 40 1 1.9376 5.7162 -3.7411 41 1 3.2304 6.1349 -1.1933 42 1 1.5742 6.6354 -1.6443 43 1 2.0887 4.7612 0.3591 44 1 0.5900 4.7307 -0.6282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382149967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:51 Heat of formation + Delta-G solvation = -3.185843 kcal Electronic energy + Delta-G solvation = -20530.052532 eV Core-core repulsion = 17867.725991 eV Total energy + Delta-G solvation = -2662.326542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30223 -35.63404 -34.63637 -32.28186 -30.68224 -27.64125 -27.17042 -26.72143 -26.35882 -24.13934 -22.83629 -20.43798 -19.75814 -18.93238 -17.64730 -16.34161 -15.39215 -14.88568 -14.50778 -14.11695 -13.87883 -13.23943 -13.08458 -12.82620 -12.78577 -12.45423 -12.37251 -11.97251 -11.64545 -11.34751 -11.15400 -11.09750 -10.99787 -10.85422 -10.77558 -10.52510 -10.33409 -10.10384 -9.99110 -9.87006 -9.71062 -9.65403 -9.51059 -9.01242 -8.72625 -8.35054 -7.21089 -5.94660 -3.96622 3.34251 3.38954 3.41738 4.42967 4.57204 4.95273 5.06114 5.32810 5.33005 5.37887 5.42761 5.48044 5.80617 5.83150 5.85866 5.96033 5.99174 6.05078 6.08111 6.19128 6.23213 6.29388 6.34443 6.35306 6.45341 6.49526 6.56069 6.63350 6.65797 6.73564 6.82735 6.86863 6.96584 6.99949 7.17424 7.30373 7.48101 7.67680 7.76535 7.90475 8.26016 8.43203 8.61857 9.09083 9.66374 11.12248 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023323 B = 0.008386 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.222566 B = 3338.150859 C = 4069.510902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.206 3.794 4 H -0.004 1.004 5 C -0.489 4.489 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.489 5.489 14 C 0.045 3.955 15 C -0.063 4.063 16 C -0.131 4.131 17 C -0.136 4.136 18 C -0.108 4.108 19 H 0.076 0.924 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.096 4.096 23 C 0.081 3.919 24 H 0.034 0.966 25 H 0.038 0.962 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.011 0.989 29 H 0.089 0.911 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 5.190 -11.308 12.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.100 3.900 4 H 0.014 0.986 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.213 5.213 14 C -0.083 4.083 15 C -0.063 4.063 16 C -0.188 4.188 17 C -0.193 4.193 18 C -0.127 4.127 19 H 0.095 0.905 20 C -0.145 4.145 21 C -0.162 4.162 22 C -0.134 4.134 23 C -0.029 4.029 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.456 5.076 -11.086 12.202 hybrid contribution 0.643 0.245 0.953 1.175 sum 0.188 5.321 -10.133 11.447 Atomic orbital electron populations 1.21463 0.97301 0.97491 1.01436 1.21537 0.95228 0.98274 0.99845 1.19473 0.92823 0.91145 0.86584 0.98611 1.21026 1.30597 1.11745 0.89381 0.91780 1.24891 0.95408 0.95146 0.98770 1.69875 1.37599 1.23141 1.22832 0.86686 0.79323 0.79723 0.82438 1.20307 1.21513 1.20438 1.64725 1.53691 1.01103 1.01778 1.23718 0.98535 0.95418 0.90613 1.20828 0.94887 0.95724 0.94881 1.21792 0.99916 1.00593 0.96548 1.21840 0.95374 1.00906 1.01173 1.22021 1.00541 0.92726 0.97432 0.90527 1.21549 1.00380 0.95663 0.96864 1.22921 1.00402 0.98086 0.94779 1.21741 1.00517 0.92751 0.98346 1.22248 0.95951 0.91303 0.93411 0.94833 0.94246 0.96717 0.92124 0.97040 0.89227 0.93114 0.91309 0.94256 0.93208 0.92444 0.93195 0.92890 0.92636 0.93100 0.92012 0.92619 0.92263 0.92352 0.91028 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.53 37.16 0.35 -2.34 16 2 C -0.11 -2.67 5.24 -26.73 -0.14 -2.81 16 3 C 0.21 5.12 1.44 -68.86 -0.10 5.02 16 4 H 0.00 -0.10 7.95 -51.93 -0.41 -0.51 16 5 C -0.49 -12.99 6.48 -34.44 -0.22 -13.21 16 6 H 0.06 1.71 6.31 -52.49 -0.33 1.38 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -25.37 11.33 55.43 0.63 -24.75 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.49 -10.37 4.46 -215.32 -0.96 -11.33 16 14 C 0.05 0.83 4.74 -0.45 0.00 0.82 16 15 C -0.06 -0.94 0.90 -153.98 -0.14 -1.08 16 16 C -0.13 -1.68 8.37 37.16 0.31 -1.37 16 17 C -0.14 -1.86 7.41 37.16 0.28 -1.59 16 18 C -0.11 -1.71 2.21 -90.30 -0.20 -1.91 16 19 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 20 C -0.11 -1.47 6.32 -26.41 -0.17 -1.63 16 21 C -0.12 -1.79 6.93 -23.48 -0.16 -1.95 16 22 C -0.10 -1.74 5.27 -25.92 -0.14 -1.87 16 23 C 0.08 1.56 1.74 -67.41 -0.12 1.44 16 24 H 0.03 0.71 6.83 -51.93 -0.35 0.35 16 25 H 0.04 0.84 7.77 -51.93 -0.40 0.44 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 1.48 7.03 -51.93 -0.37 1.12 16 28 H 0.01 0.25 6.94 -51.93 -0.36 -0.11 16 29 H 0.09 2.41 6.09 -51.93 -0.32 2.10 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.07 1.24 7.75 -51.93 -0.40 0.84 16 32 H 0.04 0.76 7.16 -51.93 -0.37 0.39 16 33 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.64 7.46 -51.93 -0.39 0.25 16 37 H 0.05 0.84 7.04 -51.93 -0.37 0.47 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.82 6.62 -51.93 -0.34 0.47 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.43 7.70 -51.93 -0.40 1.03 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -27.24 320.71 -9.23 -36.47 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.17 Total: -0.57 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -0.54 Total: -20.98 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.33 Total: -36.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.24 -9.23 -36.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382149967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.284 kcal (2) G-P(sol) polarization free energy of solvation -27.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds