Wall clock time and date at job start Mon Mar 30 2020 07:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46709 * 2 1 4 4 H 1.08994 * 109.47582 * 302.99204 * 3 2 1 5 5 C 1.50707 * 109.46766 * 182.99200 * 3 2 1 6 6 H 1.07993 * 120.00047 * 302.14915 * 5 3 2 7 7 C 1.37878 * 119.99759 * 122.15124 * 5 3 2 8 8 N 1.31514 * 120.00210 * 172.73613 * 7 5 3 9 9 Si 1.86798 * 119.99904 * 352.74241 * 7 5 3 10 10 H 1.48502 * 109.47380 * 85.49909 * 9 7 5 11 11 H 1.48505 * 109.46926 * 205.49889 * 9 7 5 12 12 H 1.48498 * 109.47373 * 325.49742 * 9 7 5 13 13 N 1.46894 * 109.47104 * 62.99473 * 3 2 1 14 14 C 1.48603 * 111.01653 * 66.00064 * 13 3 2 15 15 C 1.54332 * 104.50708 * 159.10187 * 14 13 3 16 16 C 1.53008 * 110.29978 * 216.39275 * 15 14 13 17 17 C 1.53002 * 110.30621 * 94.33597 * 15 14 13 18 18 C 1.54049 * 105.24746 * 335.36203 * 15 14 13 19 19 H 1.09003 * 112.46455 * 238.09194 * 18 15 14 20 20 C 1.54672 * 108.86224 * 112.73839 * 18 15 14 21 21 C 1.54833 * 102.97001 * 210.84085 * 20 18 15 22 22 C 1.54205 * 104.18815 * 38.01764 * 21 20 18 23 23 C 1.48422 * 111.00170 * 181.99263 * 13 3 2 24 24 H 1.09003 * 112.66514 * 323.85375 * 23 13 3 25 25 H 1.09008 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47160 * 299.99818 * 1 2 3 27 27 H 1.08999 * 109.47702 * 60.00166 * 1 2 3 28 28 H 1.09004 * 109.46862 * 240.00641 * 2 1 3 29 29 H 1.09000 * 109.47274 * 120.00156 * 2 1 3 30 30 H 0.96996 * 120.00225 * 180.02562 * 8 7 5 31 31 H 1.08991 * 110.39070 * 40.37560 * 14 13 3 32 32 H 1.08998 * 110.50296 * 277.87920 * 14 13 3 33 33 H 1.08999 * 109.46785 * 297.21813 * 16 15 14 34 34 H 1.08998 * 109.46835 * 177.22135 * 16 15 14 35 35 H 1.08994 * 109.46995 * 57.22113 * 16 15 14 36 36 H 1.09004 * 109.46605 * 191.29705 * 17 15 14 37 37 H 1.09003 * 109.46541 * 311.29524 * 17 15 14 38 38 H 1.08990 * 109.47356 * 71.29783 * 17 15 14 39 39 H 1.09001 * 110.71429 * 329.20827 * 20 18 15 40 40 H 1.09001 * 110.72010 * 92.29032 * 20 18 15 41 41 H 1.09000 * 110.48770 * 156.69461 * 21 20 18 42 42 H 1.09000 * 110.48621 * 279.20625 * 21 20 18 43 43 H 1.09004 * 110.00537 * 95.19054 * 22 21 20 44 44 H 1.09000 * 110.00166 * 216.49727 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6334 1.9717 -0.8619 5 6 3.5451 1.4432 -0.0742 6 1 4.1232 0.9321 0.6814 7 6 4.1841 2.0965 -1.1066 8 7 5.4934 2.2202 -1.0962 9 14 3.1902 2.8060 -2.5202 10 1 2.7148 4.1654 -2.1578 11 1 4.0429 2.8868 -3.7333 12 1 2.0227 1.9298 -2.7932 13 7 1.6101 2.1138 1.2339 14 6 2.2610 1.5080 2.4246 15 6 2.1625 2.5962 3.5146 16 6 3.4204 2.5902 4.3857 17 6 0.9191 2.3724 4.3775 18 6 2.0491 3.9278 2.7485 19 1 2.8458 4.6257 3.0061 20 6 0.6414 4.5231 2.9862 21 6 0.3621 5.2907 1.6708 22 6 0.9641 4.3907 0.5729 23 6 2.0468 3.5323 1.2476 24 1 3.0241 3.6754 0.7866 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 5.9429 2.6800 -1.8224 31 1 3.3045 1.2773 2.2108 32 1 1.7279 0.6094 2.7352 33 1 3.5001 1.6336 4.9021 34 1 3.3586 3.3947 5.1185 35 1 4.2984 2.7381 3.7570 36 1 0.7508 3.2470 5.0060 37 1 0.0535 2.2156 3.7337 38 1 1.0670 1.4953 5.0074 39 1 -0.0925 3.7307 3.1334 40 1 0.6489 5.2028 3.8383 41 1 -0.7107 5.4111 1.5198 42 1 0.8560 6.2623 1.6839 43 1 0.1902 3.7501 0.1500 44 1 1.4085 5.0048 -0.2104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382149968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:53 Heat of formation + Delta-G solvation = -26.906594 kcal Electronic energy + Delta-G solvation = -20828.717530 eV Core-core repulsion = 18165.362379 eV Total energy + Delta-G solvation = -2663.355151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35077 -37.30510 -35.65658 -34.23563 -32.87575 -29.25284 -29.01339 -28.22043 -27.54184 -25.84847 -24.26291 -21.60078 -21.13500 -20.24990 -19.57969 -18.84676 -17.11329 -16.65394 -16.03418 -15.55535 -15.33181 -14.89731 -14.48889 -14.43955 -14.27616 -14.01629 -13.84841 -13.55820 -13.49930 -13.01009 -12.76512 -12.49463 -12.40846 -12.28077 -12.14114 -11.92036 -11.78983 -11.60448 -11.54692 -11.44319 -11.32199 -11.04421 -11.00045 -10.91366 -10.89379 -10.68860 -8.91584 -8.33515 -6.36081 1.25834 1.27756 1.36692 2.27490 3.00504 3.53951 3.68536 3.72667 4.02049 4.26914 4.30224 4.34252 4.38514 4.54412 4.65026 4.70124 4.73943 4.78424 4.82888 4.85037 4.88644 4.96299 4.97916 5.08809 5.13734 5.15069 5.18539 5.22049 5.24475 5.26560 5.31244 5.38384 5.40880 5.46226 5.51571 5.55111 5.66269 5.66696 5.67268 5.78457 6.19628 6.47811 6.53197 6.74060 7.32382 8.82661 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019129 B = 0.009809 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.371427 B = 2853.844561 C = 2968.761794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C 0.162 3.838 4 H 0.036 0.964 5 C -0.524 4.524 6 H 0.034 0.966 7 C 0.026 3.974 8 N -0.944 5.944 9 Si 0.924 3.076 10 H -0.264 1.264 11 H -0.291 1.291 12 H -0.251 1.251 13 N -0.482 5.482 14 C 0.047 3.953 15 C -0.063 4.063 16 C -0.133 4.133 17 C -0.121 4.121 18 C -0.085 4.085 19 H 0.069 0.931 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.114 4.114 23 C 0.059 3.941 24 H 0.023 0.977 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.021 0.979 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 3.545 9.054 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C 0.054 3.946 4 H 0.054 0.946 5 C -0.563 4.563 6 H 0.053 0.947 7 C -0.172 4.172 8 N -0.584 5.584 9 Si 0.749 3.251 10 H -0.189 1.189 11 H -0.217 1.217 12 H -0.175 1.175 13 N -0.205 5.205 14 C -0.081 4.081 15 C -0.063 4.063 16 C -0.190 4.190 17 C -0.178 4.178 18 C -0.104 4.104 19 H 0.087 0.913 20 C -0.144 4.144 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.050 4.050 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.834 3.541 8.959 16.047 hybrid contribution 1.822 0.146 -1.443 2.329 sum -11.012 3.687 7.516 13.833 Atomic orbital electron populations 1.21622 0.94627 1.00865 1.01737 1.21485 0.96204 0.96594 0.99883 1.19810 0.91289 0.92859 0.90629 0.94570 1.21680 0.92682 1.32361 1.09597 0.94737 1.25807 0.95381 0.95819 1.00242 1.70065 1.09955 1.44637 1.33761 0.86094 0.79429 0.80086 0.79477 1.18910 1.21743 1.17516 1.65850 1.51159 1.01103 1.02382 1.23043 0.97002 0.97194 0.90882 1.21268 0.96550 0.93912 0.94581 1.21824 0.96054 1.02152 0.98980 1.21871 0.95923 1.01642 0.98383 1.22688 0.98535 0.96076 0.93058 0.91287 1.22709 0.95410 0.99543 0.96784 1.22294 1.00729 0.97617 0.94412 1.22104 0.97728 0.97360 0.97979 1.22985 0.95669 0.90254 0.96103 0.95864 0.92491 0.91683 0.94034 0.94209 0.93573 0.92819 0.96118 0.91304 0.92244 0.90997 0.95558 0.91078 0.91834 0.92785 0.89235 0.90338 0.90346 0.91897 0.91643 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.78 71.98 0.70 -3.60 16 2 C -0.10 -4.23 5.32 30.59 0.16 -4.07 16 3 C 0.16 7.49 1.76 44.17 0.08 7.57 16 4 H 0.04 1.74 4.70 -2.39 -0.01 1.73 16 5 C -0.52 -29.35 6.70 25.60 0.17 -29.18 16 6 H 0.03 2.18 6.58 -2.91 -0.02 2.16 16 7 C 0.03 1.51 5.14 84.65 0.44 1.95 16 8 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 9 Si 0.92 45.10 27.00 68.60 1.85 46.95 16 10 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 12 H -0.25 -11.57 6.72 99.48 0.67 -10.90 16 13 N -0.48 -19.43 4.16 -833.27 -3.47 -22.90 16 14 C 0.05 1.82 4.49 86.43 0.39 2.21 16 15 C -0.06 -1.93 1.01 -51.37 -0.05 -1.98 16 16 C -0.13 -3.92 8.30 71.98 0.60 -3.32 16 17 C -0.12 -2.87 7.07 71.98 0.51 -2.36 16 18 C -0.08 -2.74 3.48 -9.11 -0.03 -2.77 16 19 H 0.07 2.28 7.82 -2.39 -0.02 2.27 16 20 C -0.11 -2.70 4.97 31.79 0.16 -2.54 16 21 C -0.11 -2.98 6.83 31.63 0.22 -2.77 16 22 C -0.11 -4.00 6.48 31.26 0.20 -3.80 16 23 C 0.06 2.39 2.91 45.64 0.13 2.52 16 24 H 0.02 1.19 6.66 -2.39 -0.02 1.17 16 25 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.06 2.07 7.69 -2.39 -0.02 2.06 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.89 6.98 -2.39 -0.02 1.87 16 30 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.02 0.98 5.38 -2.39 -0.01 0.97 16 32 H 0.07 2.48 7.36 -2.39 -0.02 2.47 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.03 0.91 8.12 -2.39 -0.02 0.90 16 36 H 0.07 1.40 7.27 -2.38 -0.02 1.38 16 37 H 0.06 1.55 6.59 -2.39 -0.02 1.53 16 38 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 39 H 0.09 2.18 5.23 -2.39 -0.01 2.17 16 40 H 0.08 1.61 8.11 -2.39 -0.02 1.59 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 2.33 7.88 -2.38 -0.02 2.31 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -63.23 318.24 3.26 -59.97 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.90 Total: 16.94 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 3.67 Total: -42.14 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -3.17 Total: -81.72 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.85 Total: 46.95 kcal Total: -63.23 3.26 -59.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382149968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.062 kcal (2) G-P(sol) polarization free energy of solvation -63.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds