Wall clock time and date at job start Mon Mar 30 2020 07:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00545 * 2 1 4 4 C 1.53006 * 109.47436 * 124.99662 * 3 2 1 5 5 C 1.52991 * 109.47198 * 174.75948 * 4 3 2 6 6 H 1.09000 * 109.47706 * 304.78654 * 5 4 3 7 7 C 1.52999 * 109.47058 * 184.78478 * 5 4 3 8 8 C 1.53005 * 109.47358 * 175.88039 * 7 5 4 9 9 N 1.46896 * 109.47347 * 64.78732 * 5 4 3 10 10 C 1.46901 * 111.00383 * 256.37703 * 9 5 4 11 11 H 1.09005 * 110.66839 * 32.05805 * 10 9 5 12 12 C 1.54888 * 110.75460 * 268.62635 * 10 9 5 13 13 C 1.54263 * 104.19523 * 203.74105 * 12 10 9 14 14 C 1.53869 * 106.60189 * 23.60525 * 13 12 10 15 15 H 1.08995 * 110.03751 * 240.71908 * 14 13 12 16 16 C 1.50705 * 110.03342 * 119.28478 * 14 13 12 17 17 H 1.07993 * 120.00328 * 242.83809 * 16 14 13 18 18 C 1.37875 * 119.99881 * 62.83639 * 16 14 13 19 19 N 1.31517 * 119.99834 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00089 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46796 * 60.00403 * 20 18 16 22 22 H 1.48497 * 109.46866 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47194 * 300.00065 * 20 18 16 24 24 C 1.54265 * 106.59646 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.99356 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00470 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.99548 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47125 * 5.00085 * 3 2 1 29 29 H 1.08992 * 109.47470 * 244.99987 * 3 2 1 30 30 H 1.09001 * 109.46754 * 294.76179 * 4 3 2 31 31 H 1.08997 * 109.46751 * 54.75736 * 4 3 2 32 32 H 1.08997 * 109.47626 * 295.88259 * 7 5 4 33 33 H 1.09005 * 109.46967 * 55.88417 * 7 5 4 34 34 H 1.08995 * 109.47251 * 185.33620 * 8 7 5 35 35 H 1.09001 * 109.46920 * 305.33363 * 8 7 5 36 36 H 1.09002 * 109.46796 * 65.33229 * 8 7 5 37 37 H 1.00902 * 110.99964 * 20.32601 * 9 5 4 38 38 H 1.09007 * 110.48709 * 322.41701 * 12 10 9 39 39 H 1.08997 * 110.48837 * 85.05860 * 12 10 9 40 40 H 1.09002 * 110.03020 * 264.32366 * 13 12 10 41 41 H 1.09001 * 110.07624 * 142.92002 * 13 12 10 42 42 H 0.97001 * 119.99846 * 179.97438 * 19 18 16 43 43 H 1.09007 * 110.48752 * 217.71180 * 24 14 13 44 44 H 1.09000 * 110.48960 * 95.06572 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3330 1.1817 5 6 3.8918 2.5984 1.1077 6 1 4.3892 2.6445 0.1389 7 6 4.9426 2.5686 2.2195 8 6 5.8640 3.7825 2.0831 9 7 3.0354 3.7801 1.2751 10 6 2.7987 4.4454 -0.0130 11 1 2.7841 3.7181 -0.8248 12 6 3.8647 5.5393 -0.2699 13 6 3.1817 6.5090 -1.2562 14 6 1.6649 6.3286 -1.0708 15 1 1.2118 5.9937 -2.0039 16 6 1.0406 7.6276 -0.6302 17 1 0.5557 7.6945 0.3324 18 6 1.0884 8.7305 -1.4562 19 7 1.6793 8.6491 -2.6283 20 14 0.3152 10.3408 -0.9098 21 1 0.9656 10.8022 0.3428 22 1 0.5016 11.3641 -1.9697 23 1 -1.1357 10.1364 -0.6681 24 6 1.4791 5.2561 0.0222 25 1 -0.5399 0.9354 0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3588 2.1316 0.0896 29 1 2.6214 1.4025 -0.9313 30 1 2.4722 1.3293 2.1150 31 1 3.6798 0.4549 1.1428 32 1 4.4462 2.5965 3.1895 33 1 5.5312 1.6548 2.1386 34 1 6.6685 3.7120 2.8151 35 1 6.2875 3.8061 1.0790 36 1 5.2924 4.6940 2.2579 37 1 2.1640 3.5349 1.7208 38 1 4.1154 6.0531 0.6583 39 1 4.7573 5.1041 -0.7191 40 1 3.4648 6.2616 -2.2794 41 1 3.4662 7.5363 -1.0285 42 1 1.7127 9.4250 -3.2095 43 1 0.6307 4.6136 -0.2140 44 1 1.3444 5.7243 0.9973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382175869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:57 Heat of formation + Delta-G solvation = -18.352759 kcal Electronic energy + Delta-G solvation = -19177.975165 eV Core-core repulsion = 16514.990936 eV Total energy + Delta-G solvation = -2662.984228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.62518 -36.40930 -34.64945 -32.62280 -31.27630 -30.04360 -27.98143 -26.69860 -25.07429 -23.39668 -22.16260 -20.52891 -19.85028 -19.37847 -18.72789 -16.31351 -15.60053 -15.27280 -14.85023 -14.59403 -14.44555 -14.04248 -13.67969 -13.36123 -12.76194 -12.63392 -12.43365 -12.20721 -11.69689 -11.64537 -11.54094 -11.04929 -10.96181 -10.82357 -10.68578 -10.60941 -10.51322 -10.40686 -10.11697 -10.09678 -9.82415 -9.52424 -9.37225 -9.06206 -8.61503 -8.29229 -7.90819 -5.93910 -3.96426 2.20690 3.36124 3.40588 3.43378 4.47710 4.54120 4.65149 4.90999 5.04281 5.20771 5.30151 5.37113 5.43426 5.53919 5.62249 5.64800 5.71632 5.78360 5.85638 5.89509 6.01475 6.06691 6.12876 6.17994 6.22027 6.32109 6.50316 6.55159 6.59416 6.63860 6.70684 6.77155 6.86896 6.92437 7.08952 7.28747 7.46521 7.67320 7.79281 7.85372 8.01313 8.07490 8.55656 9.06881 9.66896 11.15474 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.005349 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.480085 B = 5233.440110 C = 6089.752796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.100 4.100 4 C -0.136 4.136 5 C 0.085 3.915 6 H 0.069 0.931 7 C -0.106 4.106 8 C -0.142 4.142 9 N -0.674 5.674 10 C 0.079 3.921 11 H 0.042 0.958 12 C -0.108 4.108 13 C -0.093 4.093 14 C 0.048 3.952 15 H 0.023 0.977 16 C -0.510 4.510 17 H 0.053 0.947 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.887 3.113 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.115 4.115 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.335 0.665 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.033 0.967 41 H 0.062 0.938 42 H 0.259 0.741 43 H 0.037 0.963 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -15.041 6.646 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.137 4.137 4 C -0.175 4.175 5 C -0.026 4.026 6 H 0.087 0.913 7 C -0.145 4.145 8 C -0.200 4.200 9 N -0.305 5.305 10 C -0.030 4.030 11 H 0.060 0.940 12 C -0.146 4.146 13 C -0.131 4.131 14 C 0.029 3.971 15 H 0.041 0.959 16 C -0.548 4.548 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.153 4.153 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.432 -14.503 6.652 16.560 hybrid contribution -1.050 0.243 -0.295 1.118 sum 3.382 -14.260 6.357 15.975 Atomic orbital electron populations 1.23881 0.96052 1.01832 1.01634 1.22971 0.96026 0.98403 0.99541 1.20871 0.98498 0.95439 0.98896 1.22198 0.97973 0.99117 0.98237 1.21724 0.93905 0.88219 0.98703 0.91293 1.21477 0.96509 0.97731 0.98748 1.21655 0.98426 0.99481 1.00419 1.60611 1.20094 1.25849 1.23911 1.22707 0.97327 0.94685 0.88282 0.94019 1.22416 0.96004 0.96319 0.99841 1.22045 0.97509 0.98121 0.95460 1.19160 0.92385 0.92578 0.92938 0.95858 1.21225 1.35747 0.95200 1.02622 0.92845 1.24976 0.95462 0.98689 0.94972 1.69979 1.43657 1.30073 1.09233 0.86737 0.79834 0.83657 0.78231 1.20306 1.21422 1.20403 1.22645 0.93541 0.97472 1.01606 0.88401 0.88787 0.87765 0.91074 0.91065 0.91660 0.91757 0.92214 0.92968 0.94123 0.93517 0.91154 0.84606 0.91879 0.94491 0.94801 0.91956 0.93146 0.94374 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 14.32 29.01 0.42 -1.62 16 2 C -0.15 -1.59 9.52 -36.03 -0.34 -1.93 16 3 C -0.10 -1.14 4.49 -27.88 -0.13 -1.27 16 4 C -0.14 -1.45 4.50 -26.73 -0.12 -1.57 16 5 C 0.08 1.04 2.14 -67.72 -0.14 0.90 16 6 H 0.07 0.93 7.46 -51.93 -0.39 0.54 16 7 C -0.11 -1.21 5.62 -26.73 -0.15 -1.36 16 8 C -0.14 -1.77 9.73 37.16 0.36 -1.41 16 9 N -0.67 -9.78 5.49 -97.66 -0.54 -10.31 16 10 C 0.08 1.38 2.27 -65.71 -0.15 1.23 16 11 H 0.04 0.73 6.65 -51.93 -0.35 0.38 16 12 C -0.11 -2.09 6.51 -25.07 -0.16 -2.25 16 13 C -0.09 -2.20 5.60 -25.62 -0.14 -2.34 16 14 C 0.05 1.21 2.82 -90.65 -0.26 0.95 16 15 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 16 C -0.51 -14.10 8.32 -34.44 -0.29 -14.39 16 17 H 0.05 1.46 7.54 -52.49 -0.40 1.07 16 18 C 0.06 1.69 5.09 -17.82 -0.09 1.60 16 19 N -0.89 -25.97 12.44 55.43 0.69 -25.28 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 C -0.11 -2.33 5.73 -25.06 -0.14 -2.48 16 25 H 0.10 1.06 7.84 -52.49 -0.41 0.65 16 26 H 0.09 0.83 8.06 -52.49 -0.42 0.40 16 27 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.07 0.91 6.71 -51.93 -0.35 0.57 16 29 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 30 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 37 H 0.34 4.69 7.55 -39.29 -0.30 4.39 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.64 7.26 -51.93 -0.38 1.27 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.36 7.67 -51.93 -0.40 0.96 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -27.80 343.91 -9.44 -37.23 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.41 Total: 2.57 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -1.34 Total: -25.94 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.15 Total: -35.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.80 -9.44 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382175869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.881 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds