Wall clock time and date at job start Mon Mar 30 2020 07:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00545 * 2 1 4 4 C 1.53006 * 109.47436 * 124.99662 * 3 2 1 5 5 C 1.52991 * 109.47198 * 174.75948 * 4 3 2 6 6 H 1.09000 * 109.47706 * 304.78654 * 5 4 3 7 7 C 1.52999 * 109.47058 * 184.78478 * 5 4 3 8 8 C 1.53005 * 109.47358 * 175.88039 * 7 5 4 9 9 N 1.46896 * 109.47347 * 64.78732 * 5 4 3 10 10 C 1.46901 * 111.00383 * 256.37703 * 9 5 4 11 11 H 1.09005 * 110.66839 * 32.05805 * 10 9 5 12 12 C 1.54888 * 110.75460 * 268.62635 * 10 9 5 13 13 C 1.54263 * 104.19523 * 203.74105 * 12 10 9 14 14 C 1.53869 * 106.60189 * 23.60525 * 13 12 10 15 15 H 1.08995 * 110.03751 * 240.71908 * 14 13 12 16 16 C 1.50705 * 110.03342 * 119.28478 * 14 13 12 17 17 H 1.07993 * 120.00328 * 242.83809 * 16 14 13 18 18 C 1.37875 * 119.99881 * 62.83639 * 16 14 13 19 19 N 1.31517 * 119.99834 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00089 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46796 * 60.00403 * 20 18 16 22 22 H 1.48497 * 109.46866 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47194 * 300.00065 * 20 18 16 24 24 C 1.54265 * 106.59646 * 0.02562 * 14 13 12 25 25 H 1.08002 * 119.99356 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00470 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.99548 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47125 * 5.00085 * 3 2 1 29 29 H 1.08992 * 109.47470 * 244.99987 * 3 2 1 30 30 H 1.09001 * 109.46754 * 294.76179 * 4 3 2 31 31 H 1.08997 * 109.46751 * 54.75736 * 4 3 2 32 32 H 1.08997 * 109.47626 * 295.88259 * 7 5 4 33 33 H 1.09005 * 109.46967 * 55.88417 * 7 5 4 34 34 H 1.08995 * 109.47251 * 185.33620 * 8 7 5 35 35 H 1.09001 * 109.46920 * 305.33363 * 8 7 5 36 36 H 1.09002 * 109.46796 * 65.33229 * 8 7 5 37 37 H 1.00902 * 110.99964 * 20.32601 * 9 5 4 38 38 H 1.09007 * 110.48709 * 322.41701 * 12 10 9 39 39 H 1.08997 * 110.48837 * 85.05860 * 12 10 9 40 40 H 1.09002 * 110.03020 * 264.32366 * 13 12 10 41 41 H 1.09001 * 110.07624 * 142.92002 * 13 12 10 42 42 H 0.97001 * 119.99846 * 179.97438 * 19 18 16 43 43 H 1.09007 * 110.48752 * 217.71180 * 24 14 13 44 44 H 1.09000 * 110.48960 * 95.06572 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3330 1.1817 5 6 3.8918 2.5984 1.1077 6 1 4.3892 2.6445 0.1389 7 6 4.9426 2.5686 2.2195 8 6 5.8640 3.7825 2.0831 9 7 3.0354 3.7801 1.2751 10 6 2.7987 4.4454 -0.0130 11 1 2.7841 3.7181 -0.8248 12 6 3.8647 5.5393 -0.2699 13 6 3.1817 6.5090 -1.2562 14 6 1.6649 6.3286 -1.0708 15 1 1.2118 5.9937 -2.0039 16 6 1.0406 7.6276 -0.6302 17 1 0.5557 7.6945 0.3324 18 6 1.0884 8.7305 -1.4562 19 7 1.6793 8.6491 -2.6283 20 14 0.3152 10.3408 -0.9098 21 1 0.9656 10.8022 0.3428 22 1 0.5016 11.3641 -1.9697 23 1 -1.1357 10.1364 -0.6681 24 6 1.4791 5.2561 0.0222 25 1 -0.5399 0.9354 0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3588 2.1316 0.0896 29 1 2.6214 1.4025 -0.9313 30 1 2.4722 1.3293 2.1150 31 1 3.6798 0.4549 1.1428 32 1 4.4462 2.5965 3.1895 33 1 5.5312 1.6548 2.1386 34 1 6.6685 3.7120 2.8151 35 1 6.2875 3.8061 1.0790 36 1 5.2924 4.6940 2.2579 37 1 2.1640 3.5349 1.7208 38 1 4.1154 6.0531 0.6583 39 1 4.7573 5.1041 -0.7191 40 1 3.4648 6.2616 -2.2794 41 1 3.4662 7.5363 -1.0285 42 1 1.7127 9.4250 -3.2095 43 1 0.6307 4.6136 -0.2140 44 1 1.3444 5.7243 0.9973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382175869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:57 Heat of formation + Delta-G solvation = -32.299213 kcal Electronic energy + Delta-G solvation = -19178.579928 eV Core-core repulsion = 16514.990936 eV Total energy + Delta-G solvation = -2663.588992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.92401 -37.84952 -35.61858 -34.49457 -32.56246 -31.14873 -29.81010 -28.14570 -26.45435 -25.20796 -23.04338 -21.66437 -21.06893 -20.66370 -20.40523 -18.26330 -16.93650 -16.51683 -16.38228 -15.99055 -15.84985 -15.23393 -14.71369 -14.51965 -14.33481 -14.01978 -13.64874 -13.58189 -13.32565 -12.92722 -12.67022 -12.54404 -12.43577 -12.41480 -12.07978 -11.92443 -11.71359 -11.69374 -11.61812 -11.47772 -11.42746 -11.30465 -10.87465 -10.69931 -10.43382 -10.19336 -9.12066 -8.10384 -6.19948 1.41012 1.41084 1.42671 1.50037 2.44326 3.20325 3.33853 3.76322 3.97571 4.07257 4.12216 4.20814 4.34870 4.39478 4.45785 4.53474 4.64091 4.69708 4.78693 4.80383 4.91411 4.95653 5.01019 5.02597 5.10684 5.14896 5.19529 5.21354 5.26130 5.29477 5.36525 5.43394 5.50444 5.61043 5.67290 5.69851 5.75149 5.91574 5.96137 5.97216 6.39136 6.43371 6.67197 6.92479 7.47140 8.98500 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.005349 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.480085 B = 5233.440110 C = 6089.752796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.100 4.100 4 C -0.126 4.126 5 C 0.085 3.915 6 H 0.060 0.940 7 C -0.102 4.102 8 C -0.142 4.142 9 N -0.673 5.673 10 C 0.100 3.900 11 H 0.046 0.954 12 C -0.095 4.095 13 C -0.084 4.084 14 C 0.039 3.961 15 H -0.010 1.010 16 C -0.528 4.528 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.922 5.922 20 Si 0.951 3.049 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.104 4.104 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.342 0.658 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.028 0.972 42 H 0.259 0.741 43 H 0.048 0.952 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 -16.609 8.147 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C -0.137 4.137 4 C -0.165 4.165 5 C -0.025 4.025 6 H 0.078 0.922 7 C -0.140 4.140 8 C -0.199 4.199 9 N -0.304 5.304 10 C -0.010 4.010 11 H 0.064 0.936 12 C -0.134 4.134 13 C -0.123 4.123 14 C 0.020 3.980 15 H 0.008 0.992 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.189 4.189 19 N -0.561 5.561 20 Si 0.777 3.223 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.142 4.142 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.140 0.860 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.161 0.839 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.725 -16.086 8.170 18.650 hybrid contribution -1.142 0.720 -0.788 1.563 sum 3.583 -15.366 7.382 17.420 Atomic orbital electron populations 1.24007 0.96259 1.02186 1.01498 1.23056 0.96089 0.98514 0.99619 1.20838 0.98357 0.95523 0.98991 1.22098 0.97699 0.98749 0.97949 1.21782 0.93926 0.87994 0.98782 0.92185 1.21456 0.96099 0.98121 0.98304 1.21633 0.98789 0.98972 1.00518 1.60531 1.20679 1.27343 1.21893 1.22353 0.94475 0.94073 0.90053 0.93601 1.22268 0.96833 0.95913 0.98347 1.21849 0.97282 0.97348 0.95855 1.19178 0.92690 0.93221 0.92938 0.99211 1.21601 1.35824 0.96556 1.02627 0.92967 1.25766 0.95966 1.02137 0.95016 1.70108 1.44802 1.30939 1.10270 0.85714 0.79186 0.79474 0.77927 1.19628 1.21074 1.19573 1.22452 0.95739 0.96604 0.99378 0.89456 0.87167 0.86016 0.92866 0.91829 0.91155 0.89924 0.91902 0.90855 0.92738 0.94077 0.93401 0.83913 0.92253 0.92746 0.96245 0.95303 0.93217 0.93363 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.85 14.32 67.78 0.97 -2.88 16 2 C -0.15 -2.90 9.52 25.64 0.24 -2.66 16 3 C -0.10 -2.11 4.49 29.85 0.13 -1.97 16 4 C -0.13 -2.32 4.50 30.59 0.14 -2.18 16 5 C 0.08 1.89 2.14 44.91 0.10 1.98 16 6 H 0.06 1.48 7.46 -2.39 -0.02 1.46 16 7 C -0.10 -2.02 5.62 30.60 0.17 -1.85 16 8 C -0.14 -3.23 9.73 71.98 0.70 -2.53 16 9 N -0.67 -18.44 5.49 -462.88 -2.54 -20.98 16 10 C 0.10 3.41 2.27 46.21 0.10 3.52 16 11 H 0.05 1.55 6.65 -2.38 -0.02 1.54 16 12 C -0.10 -3.69 6.51 31.67 0.21 -3.48 16 13 C -0.08 -4.15 5.60 31.32 0.18 -3.97 16 14 C 0.04 1.99 2.82 -10.82 -0.03 1.96 16 15 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 16 C -0.53 -29.89 8.32 25.60 0.21 -29.67 16 17 H 0.05 2.89 7.54 -2.91 -0.02 2.87 16 18 C 0.01 0.54 5.09 84.65 0.43 0.97 16 19 N -0.92 -55.29 12.44 21.45 0.27 -55.02 16 20 Si 0.95 44.73 29.54 68.60 2.03 46.76 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 C -0.10 -4.23 5.73 31.68 0.18 -4.05 16 25 H 0.09 1.82 7.84 -2.91 -0.02 1.80 16 26 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 27 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.05 1.30 6.71 -2.38 -0.02 1.29 16 29 H 0.06 1.44 8.01 -2.39 -0.02 1.42 16 30 H 0.07 1.26 8.05 -2.39 -0.02 1.24 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 1.30 7.88 -2.39 -0.02 1.28 16 37 H 0.34 8.91 7.55 -89.69 -0.68 8.23 16 38 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.03 1.56 7.26 -2.39 -0.02 1.55 16 42 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.05 1.84 8.14 -2.38 -0.02 1.83 16 44 H 0.06 2.46 7.67 -2.39 -0.02 2.44 16 Total: -1.00 -60.84 343.91 3.73 -57.11 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.24 Total: 18.94 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 3.74 Total: -46.81 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.27 Total: -76.00 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -60.84 3.73 -57.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382175869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.812 kcal (2) G-P(sol) polarization free energy of solvation -60.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds