Wall clock time and date at job start Mon Mar 30 2020 07:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 120.00108 * 2 1 4 4 C 1.52998 * 109.47517 * 124.99324 * 3 2 1 5 5 C 1.52998 * 109.47071 * 175.03410 * 4 3 2 6 6 H 1.09000 * 109.47041 * 305.65512 * 5 4 3 7 7 C 1.53000 * 109.46916 * 185.65729 * 5 4 3 8 8 C 1.52996 * 109.47167 * 174.32077 * 7 5 4 9 9 N 1.46897 * 109.47163 * 65.65595 * 5 4 3 10 10 C 1.46907 * 110.99878 * 254.23480 * 9 5 4 11 11 H 1.08999 * 110.43112 * 24.66493 * 10 9 5 12 12 C 1.54885 * 110.48454 * 262.11930 * 10 9 5 13 13 C 1.54898 * 102.74573 * 203.38129 * 12 10 9 14 14 C 1.54257 * 104.19685 * 37.94079 * 13 12 10 15 15 H 1.09005 * 110.03153 * 95.67233 * 14 13 12 16 16 C 1.50698 * 110.03383 * 217.05690 * 14 13 12 17 17 H 1.08000 * 120.00166 * 118.54882 * 16 14 13 18 18 C 1.37876 * 120.00087 * 298.55022 * 16 14 13 19 19 N 1.31517 * 119.99896 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00056 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47334 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47456 * 120.00086 * 20 18 16 23 23 H 1.48501 * 109.47068 * 239.99757 * 20 18 16 24 24 C 1.53873 * 106.60241 * 336.39372 * 14 13 12 25 25 H 1.08000 * 119.99804 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99833 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00153 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46714 * 4.99150 * 3 2 1 29 29 H 1.08999 * 109.46653 * 245.00125 * 3 2 1 30 30 H 1.08997 * 109.46857 * 55.03107 * 4 3 2 31 31 H 1.09003 * 109.46680 * 295.03640 * 4 3 2 32 32 H 1.09008 * 109.47103 * 294.31618 * 7 5 4 33 33 H 1.08993 * 109.47231 * 54.31607 * 7 5 4 34 34 H 1.09003 * 109.47335 * 305.42814 * 8 7 5 35 35 H 1.09007 * 109.47289 * 65.42656 * 8 7 5 36 36 H 1.08995 * 109.47528 * 185.42809 * 8 7 5 37 37 H 1.00904 * 111.00182 * 130.28322 * 9 5 4 38 38 H 1.09001 * 110.76263 * 321.69143 * 12 10 9 39 39 H 1.08994 * 110.75567 * 84.88505 * 12 10 9 40 40 H 1.08997 * 110.48573 * 156.62337 * 13 12 10 41 41 H 1.09004 * 110.48124 * 279.26372 * 13 12 10 42 42 H 0.97001 * 119.99849 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.03208 * 240.71767 * 24 14 13 44 44 H 1.08998 * 110.03517 * 119.27749 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8869 2.6022 1.1115 6 1 4.3718 2.6608 0.1370 7 6 4.9517 2.5629 2.2094 8 6 5.8911 3.7602 2.0518 9 7 3.0290 3.7791 1.3031 10 6 2.8156 4.4873 0.0338 11 1 2.9445 3.8069 -0.8079 12 6 3.7860 5.6885 -0.0865 13 6 3.0556 6.6191 -1.0864 14 6 1.5659 6.4847 -0.7093 15 1 1.2760 7.2936 -0.0386 16 6 0.7140 6.5147 -1.9521 17 1 0.1000 5.6635 -2.2066 18 6 0.7186 7.6289 -2.7642 19 7 1.4659 8.6657 -2.4541 20 14 -0.3378 7.6664 -4.3043 21 1 -1.0798 6.3859 -4.4270 22 1 -1.3028 8.7916 -4.2155 23 1 0.5297 7.8513 -5.4953 24 6 1.4132 5.1293 0.0030 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0894 29 1 2.6213 1.4025 -0.9314 30 1 3.6830 0.4578 1.1402 31 1 2.4720 1.3247 2.1150 32 1 4.4687 2.6062 3.1857 33 1 5.5239 1.6389 2.1277 34 1 6.3003 3.7706 1.0415 35 1 5.3374 4.6823 2.2290 36 1 6.7049 3.6809 2.7725 37 1 3.4138 4.3972 2.0018 38 1 3.9126 6.1810 0.8776 39 1 4.7489 5.3687 -0.4847 40 1 3.3892 7.6493 -0.9622 41 1 3.2217 6.2841 -2.1103 42 1 1.4688 9.4497 -3.0252 43 1 0.7231 4.4924 -0.5503 44 1 1.0494 5.2805 1.0193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382175939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:02 Heat of formation + Delta-G solvation = -17.662370 kcal Electronic energy + Delta-G solvation = -19227.544479 eV Core-core repulsion = 16564.590189 eV Total energy + Delta-G solvation = -2662.954291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.61325 -36.34529 -34.69548 -32.61930 -31.07127 -30.17336 -27.97730 -26.64984 -25.11448 -23.36036 -22.15199 -20.46423 -19.75536 -19.42895 -18.67241 -16.43643 -15.78075 -15.23361 -15.03544 -14.45856 -14.13329 -13.79765 -13.61075 -13.31998 -12.97263 -12.42544 -12.31459 -12.06381 -11.83009 -11.75828 -11.46240 -11.12751 -11.01239 -10.98525 -10.74195 -10.65712 -10.57114 -10.40908 -10.29247 -9.92103 -9.71148 -9.46537 -9.16958 -9.13501 -8.63783 -8.31478 -7.82919 -5.94615 -3.96471 2.41135 3.32665 3.40858 3.45080 4.48799 4.54266 4.75084 5.00967 5.13082 5.15621 5.31239 5.37397 5.45597 5.54971 5.63547 5.69297 5.73681 5.78377 5.90746 5.92785 5.97403 6.05212 6.07229 6.11076 6.26347 6.32674 6.44789 6.49329 6.59818 6.71045 6.77632 6.81952 6.92458 6.95968 7.16625 7.26318 7.43915 7.67368 7.81372 7.85661 7.97010 8.09918 8.55248 9.07470 9.67071 11.14828 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.006025 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.001373 B = 4646.112851 C = 5915.063005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.094 4.094 4 C -0.097 4.097 5 C 0.084 3.916 6 H 0.052 0.948 7 C -0.133 4.133 8 C -0.156 4.156 9 N -0.679 5.679 10 C 0.087 3.913 11 H 0.070 0.930 12 C -0.155 4.155 13 C -0.087 4.087 14 C 0.042 3.958 15 H 0.024 0.976 16 C -0.508 4.508 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.100 4.100 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.337 0.663 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.257 0.743 43 H 0.052 0.948 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.087 -13.231 7.720 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.169 4.169 3 C -0.131 4.131 4 C -0.135 4.135 5 C -0.026 4.026 6 H 0.071 0.929 7 C -0.172 4.172 8 C -0.213 4.213 9 N -0.310 5.310 10 C -0.022 4.022 11 H 0.088 0.912 12 C -0.194 4.194 13 C -0.126 4.126 14 C 0.023 3.977 15 H 0.042 0.958 16 C -0.546 4.546 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.714 3.286 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.138 4.138 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.539 -13.419 7.619 16.395 hybrid contribution 0.354 0.547 -1.114 1.291 sum 5.893 -12.872 6.505 15.580 Atomic orbital electron populations 1.23863 0.96132 1.01653 1.01985 1.23025 0.96061 0.98523 0.99242 1.20775 0.98845 0.95368 0.98135 1.21530 0.97222 0.95987 0.98790 1.21691 0.91481 0.92037 0.97411 0.92947 1.21872 0.97016 0.98664 0.99606 1.21843 0.99300 0.98550 1.01650 1.60725 1.50326 1.09803 1.10145 1.22619 0.96672 0.93398 0.89553 0.91176 1.23260 0.97600 0.98241 1.00260 1.22181 0.97054 0.97026 0.96330 1.19259 0.92362 0.91208 0.94845 0.95783 1.21360 1.25123 1.00745 1.07414 0.92706 1.24993 0.95587 0.95751 0.97818 1.69990 1.39774 1.05188 1.38073 0.86634 0.80475 0.77949 0.83541 1.19813 1.21135 1.21188 1.22249 0.94129 0.98248 0.99169 0.89126 0.88307 0.88188 0.89890 0.91843 0.92824 0.91630 0.91454 0.91813 0.92757 0.92398 0.92877 0.84351 0.92876 0.93932 0.92759 0.93104 0.93302 0.92959 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 14.32 29.01 0.42 -1.96 16 2 C -0.15 -1.80 9.52 -36.03 -0.34 -2.14 16 3 C -0.09 -1.24 4.79 -27.88 -0.13 -1.37 16 4 C -0.10 -1.15 4.87 -26.73 -0.13 -1.28 16 5 C 0.08 1.04 2.10 -67.72 -0.14 0.90 16 6 H 0.05 0.71 7.30 -51.93 -0.38 0.33 16 7 C -0.13 -1.39 5.33 -26.73 -0.14 -1.53 16 8 C -0.16 -1.63 9.71 37.16 0.36 -1.27 16 9 N -0.68 -9.88 5.84 -98.01 -0.57 -10.45 16 10 C 0.09 1.53 2.40 -66.05 -0.16 1.37 16 11 H 0.07 1.28 6.97 -51.93 -0.36 0.92 16 12 C -0.15 -2.84 6.42 -24.74 -0.16 -3.00 16 13 C -0.09 -2.03 5.36 -25.07 -0.13 -2.17 16 14 C 0.04 1.05 2.84 -90.66 -0.26 0.79 16 15 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.51 -14.05 8.38 -34.44 -0.29 -14.34 16 17 H 0.05 1.51 7.33 -52.49 -0.38 1.13 16 18 C 0.06 1.67 5.32 -17.82 -0.09 1.57 16 19 N -0.89 -25.90 12.33 55.43 0.68 -25.22 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.10 -2.08 6.18 -25.61 -0.16 -2.24 16 25 H 0.09 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.10 1.26 7.84 -52.49 -0.41 0.84 16 27 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.08 1.28 7.12 -51.93 -0.37 0.91 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.65 6.89 -51.92 -0.36 0.29 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.34 4.74 6.12 -39.29 -0.24 4.50 16 38 H 0.05 0.93 7.76 -51.93 -0.40 0.53 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 1.36 7.93 -51.93 -0.41 0.95 16 41 H 0.05 1.27 7.85 -51.93 -0.41 0.86 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.05 1.13 7.37 -51.93 -0.38 0.75 16 44 H 0.05 0.94 8.04 -51.93 -0.42 0.53 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -27.77 342.78 -9.42 -37.20 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.31 Total: 3.44 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -1.37 Total: -26.67 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.11 Total: -35.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.77 -9.42 -37.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382175939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.535 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds