Wall clock time and date at job start Mon Mar 30 2020 07:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 120.00108 * 2 1 4 4 C 1.52998 * 109.47517 * 124.99324 * 3 2 1 5 5 C 1.52998 * 109.47071 * 175.03410 * 4 3 2 6 6 H 1.09000 * 109.47041 * 305.65512 * 5 4 3 7 7 C 1.53000 * 109.46916 * 185.65729 * 5 4 3 8 8 C 1.52996 * 109.47167 * 174.32077 * 7 5 4 9 9 N 1.46897 * 109.47163 * 65.65595 * 5 4 3 10 10 C 1.46907 * 110.99878 * 254.23480 * 9 5 4 11 11 H 1.08999 * 110.43112 * 24.66493 * 10 9 5 12 12 C 1.54885 * 110.48454 * 262.11930 * 10 9 5 13 13 C 1.54898 * 102.74573 * 203.38129 * 12 10 9 14 14 C 1.54257 * 104.19685 * 37.94079 * 13 12 10 15 15 H 1.09005 * 110.03153 * 95.67233 * 14 13 12 16 16 C 1.50698 * 110.03383 * 217.05690 * 14 13 12 17 17 H 1.08000 * 120.00166 * 118.54882 * 16 14 13 18 18 C 1.37876 * 120.00087 * 298.55022 * 16 14 13 19 19 N 1.31517 * 119.99896 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00056 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47334 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47456 * 120.00086 * 20 18 16 23 23 H 1.48501 * 109.47068 * 239.99757 * 20 18 16 24 24 C 1.53873 * 106.60241 * 336.39372 * 14 13 12 25 25 H 1.08000 * 119.99804 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.99833 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00153 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46714 * 4.99150 * 3 2 1 29 29 H 1.08999 * 109.46653 * 245.00125 * 3 2 1 30 30 H 1.08997 * 109.46857 * 55.03107 * 4 3 2 31 31 H 1.09003 * 109.46680 * 295.03640 * 4 3 2 32 32 H 1.09008 * 109.47103 * 294.31618 * 7 5 4 33 33 H 1.08993 * 109.47231 * 54.31607 * 7 5 4 34 34 H 1.09003 * 109.47335 * 305.42814 * 8 7 5 35 35 H 1.09007 * 109.47289 * 65.42656 * 8 7 5 36 36 H 1.08995 * 109.47528 * 185.42809 * 8 7 5 37 37 H 1.00904 * 111.00182 * 130.28322 * 9 5 4 38 38 H 1.09001 * 110.76263 * 321.69143 * 12 10 9 39 39 H 1.08994 * 110.75567 * 84.88505 * 12 10 9 40 40 H 1.08997 * 110.48573 * 156.62337 * 13 12 10 41 41 H 1.09004 * 110.48124 * 279.26372 * 13 12 10 42 42 H 0.97001 * 119.99849 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.03208 * 240.71767 * 24 14 13 44 44 H 1.08998 * 110.03517 * 119.27749 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8869 2.6022 1.1115 6 1 4.3718 2.6608 0.1370 7 6 4.9517 2.5629 2.2094 8 6 5.8911 3.7602 2.0518 9 7 3.0290 3.7791 1.3031 10 6 2.8156 4.4873 0.0338 11 1 2.9445 3.8069 -0.8079 12 6 3.7860 5.6885 -0.0865 13 6 3.0556 6.6191 -1.0864 14 6 1.5659 6.4847 -0.7093 15 1 1.2760 7.2936 -0.0386 16 6 0.7140 6.5147 -1.9521 17 1 0.1000 5.6635 -2.2066 18 6 0.7186 7.6289 -2.7642 19 7 1.4659 8.6657 -2.4541 20 14 -0.3378 7.6664 -4.3043 21 1 -1.0798 6.3859 -4.4270 22 1 -1.3028 8.7916 -4.2155 23 1 0.5297 7.8513 -5.4953 24 6 1.4132 5.1293 0.0030 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0894 29 1 2.6213 1.4025 -0.9314 30 1 3.6830 0.4578 1.1402 31 1 2.4720 1.3247 2.1150 32 1 4.4687 2.6062 3.1857 33 1 5.5239 1.6389 2.1277 34 1 6.3003 3.7706 1.0415 35 1 5.3374 4.6823 2.2290 36 1 6.7049 3.6809 2.7725 37 1 3.4138 4.3972 2.0018 38 1 3.9126 6.1810 0.8776 39 1 4.7489 5.3687 -0.4847 40 1 3.3892 7.6493 -0.9622 41 1 3.2217 6.2841 -2.1103 42 1 1.4688 9.4497 -3.0252 43 1 0.7231 4.4924 -0.5503 44 1 1.0494 5.2805 1.0193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382175939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:01 Heat of formation + Delta-G solvation = -31.660272 kcal Electronic energy + Delta-G solvation = -19228.151474 eV Core-core repulsion = 16564.590189 eV Total energy + Delta-G solvation = -2663.561286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94652 -37.77988 -35.73816 -34.50725 -32.31075 -31.33628 -29.77550 -28.12311 -26.50402 -25.15553 -23.03175 -21.63078 -21.21814 -20.49209 -20.41410 -18.50005 -16.98618 -16.59438 -16.37844 -16.05354 -15.52497 -14.97264 -14.77739 -14.48601 -14.16608 -14.06333 -13.80325 -13.48426 -13.18915 -12.98305 -12.85959 -12.63821 -12.46934 -12.44566 -12.27652 -12.00922 -11.74336 -11.62063 -11.54891 -11.46953 -11.28027 -11.25001 -10.97792 -10.72114 -10.45522 -10.12225 -9.09028 -8.11075 -6.20273 1.38025 1.39906 1.47805 1.51433 2.43183 3.18383 3.35275 3.82162 3.97449 4.09457 4.16511 4.23811 4.32498 4.37074 4.43056 4.52689 4.63727 4.75210 4.78951 4.83636 4.91651 4.95404 5.00150 5.04824 5.10183 5.14707 5.16250 5.20006 5.26622 5.30434 5.37313 5.45835 5.46704 5.52264 5.57898 5.68979 5.81480 5.96620 6.00747 6.01784 6.33903 6.45374 6.68610 6.92259 7.46759 8.97656 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.006025 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.001373 B = 4646.112851 C = 5915.063005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.094 4.094 4 C -0.091 4.091 5 C 0.083 3.917 6 H 0.045 0.955 7 C -0.126 4.126 8 C -0.156 4.156 9 N -0.677 5.677 10 C 0.106 3.894 11 H 0.066 0.934 12 C -0.138 4.138 13 C -0.080 4.080 14 C 0.034 3.966 15 H -0.010 1.010 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.010 3.990 19 N -0.921 5.921 20 Si 0.950 3.050 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.090 4.090 25 H 0.110 0.890 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.343 0.657 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.259 0.741 43 H 0.040 0.960 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -15.258 8.251 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.129 4.129 5 C -0.027 4.027 6 H 0.064 0.936 7 C -0.164 4.164 8 C -0.214 4.214 9 N -0.308 5.308 10 C -0.004 4.004 11 H 0.084 0.916 12 C -0.177 4.177 13 C -0.119 4.119 14 C 0.015 3.985 15 H 0.008 0.992 16 C -0.565 4.565 17 H 0.068 0.932 18 C -0.188 4.188 19 N -0.560 5.560 20 Si 0.776 3.224 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.128 4.128 25 H 0.128 0.872 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.421 -15.459 8.163 18.624 hybrid contribution 0.057 1.191 -1.258 1.733 sum 6.477 -14.268 6.906 17.123 Atomic orbital electron populations 1.23972 0.96401 1.01892 1.02107 1.23134 0.96093 0.98716 0.99085 1.20731 0.98637 0.95183 0.98587 1.21492 0.97061 0.96509 0.97809 1.21768 0.91806 0.91032 0.98044 0.93646 1.21818 0.96355 0.99484 0.98760 1.21844 0.99668 0.98112 1.01744 1.60615 1.51611 1.10154 1.08451 1.22253 0.94037 0.93008 0.91076 0.91573 1.23131 0.98020 0.97225 0.99330 1.21946 0.96750 0.96689 0.96488 1.19270 0.93086 0.92326 0.93781 0.99179 1.21697 1.25516 1.00735 1.08550 0.93224 1.25760 0.96820 0.95421 1.00843 1.70111 1.41003 1.05680 1.39235 0.85628 0.78875 0.78113 0.79822 1.19194 1.20635 1.20584 1.22068 0.96284 0.96019 0.98475 0.87165 0.89926 0.85954 0.92759 0.92416 0.90552 0.91961 0.90969 0.90048 0.93379 0.93346 0.91374 0.83698 0.91599 0.91937 0.95296 0.95343 0.93222 0.94148 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.70 14.32 67.78 0.97 -3.73 16 2 C -0.15 -3.37 9.52 25.64 0.24 -3.13 16 3 C -0.09 -2.37 4.79 29.85 0.14 -2.23 16 4 C -0.09 -1.93 4.87 30.59 0.15 -1.78 16 5 C 0.08 1.87 2.10 44.92 0.09 1.97 16 6 H 0.05 1.12 7.30 -2.39 -0.02 1.10 16 7 C -0.13 -2.21 5.33 30.59 0.16 -2.05 16 8 C -0.16 -2.83 9.71 71.98 0.70 -2.14 16 9 N -0.68 -18.67 5.84 -463.98 -2.71 -21.38 16 10 C 0.11 3.68 2.40 45.99 0.11 3.79 16 11 H 0.07 2.37 6.97 -2.39 -0.02 2.36 16 12 C -0.14 -4.97 6.42 31.89 0.20 -4.77 16 13 C -0.08 -3.84 5.36 31.67 0.17 -3.67 16 14 C 0.03 1.77 2.84 -10.82 -0.03 1.74 16 15 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 16 C -0.53 -30.01 8.38 25.60 0.21 -29.79 16 17 H 0.05 2.81 7.33 -2.91 -0.02 2.78 16 18 C 0.01 0.56 5.32 84.65 0.45 1.01 16 19 N -0.92 -54.95 12.33 21.45 0.26 -54.68 16 20 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 C -0.09 -3.83 6.18 31.32 0.19 -3.63 16 25 H 0.11 2.03 8.06 -2.91 -0.02 2.01 16 26 H 0.08 2.12 7.84 -2.91 -0.02 2.10 16 27 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.05 1.67 7.12 -2.39 -0.02 1.65 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.96 6.89 -2.38 -0.02 0.95 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.34 8.95 6.12 -89.69 -0.55 8.40 16 38 H 0.07 2.22 7.76 -2.39 -0.02 2.20 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16 41 H 0.03 1.45 7.85 -2.38 -0.02 1.43 16 42 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.04 1.79 7.37 -2.39 -0.02 1.77 16 44 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 Total: -1.00 -61.15 342.78 3.73 -57.41 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.38 Total: 20.15 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 3.78 Total: -48.40 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -2.44 Total: -76.06 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.15 3.73 -57.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382175939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.755 kcal (2) G-P(sol) polarization free energy of solvation -61.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds