Wall clock time and date at job start Mon Mar 30 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46864 * 2 1 4 4 C 1.52997 * 109.47532 * 120.00269 * 2 1 3 5 5 H 1.08998 * 109.47363 * 185.00222 * 4 2 1 6 6 N 1.46902 * 109.47095 * 64.99686 * 4 2 1 7 7 C 1.46896 * 110.99780 * 88.92069 * 6 4 2 8 8 H 1.09005 * 110.53968 * 323.36448 * 7 6 4 9 9 C 1.54264 * 110.48662 * 85.97875 * 7 6 4 10 10 C 1.53879 * 106.59886 * 142.29109 * 9 7 6 11 11 C 1.54255 * 106.59821 * 359.97438 * 10 9 7 12 12 H 1.09005 * 110.48911 * 95.07046 * 11 10 9 13 13 C 1.50700 * 110.60240 * 217.65805 * 11 10 9 14 14 H 1.08003 * 120.00050 * 114.83924 * 13 11 10 15 15 C 1.37878 * 119.99891 * 294.84933 * 13 11 10 16 16 N 1.31518 * 120.00146 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00177 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47469 * 89.98960 * 17 15 13 19 19 H 1.48497 * 109.47276 * 209.99851 * 17 15 13 20 20 H 1.48506 * 109.46771 * 329.99451 * 17 15 13 21 21 C 1.54892 * 104.20031 * 336.39213 * 11 10 9 22 22 C 1.53005 * 109.46769 * 305.00366 * 4 2 1 23 23 C 1.53005 * 117.49292 * 254.45774 * 22 4 2 24 24 C 1.52997 * 117.49612 * 185.80321 * 22 4 2 25 25 H 1.09000 * 109.47071 * 299.99836 * 1 2 3 26 26 H 1.08995 * 109.47446 * 59.99860 * 1 2 3 27 27 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47025 * 240.00569 * 2 1 3 29 29 H 1.09008 * 109.46841 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47224 * 300.00006 * 3 2 1 31 31 H 1.08994 * 109.47090 * 60.00651 * 3 2 1 32 32 H 1.00902 * 110.99952 * 212.87188 * 6 4 2 33 33 H 1.08996 * 110.03718 * 23.00082 * 9 7 6 34 34 H 1.09008 * 110.07162 * 261.59222 * 9 7 6 35 35 H 1.09002 * 110.03086 * 240.71240 * 10 9 7 36 36 H 1.09005 * 110.03360 * 119.28381 * 10 9 7 37 37 H 0.96999 * 120.00072 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.75552 * 156.25317 * 21 11 10 39 39 H 1.08997 * 110.75422 * 279.62858 * 21 11 10 40 40 H 1.08992 * 115.55522 * 40.12871 * 22 4 2 41 41 H 1.09000 * 117.49882 * 0.02562 * 23 22 4 42 42 H 1.09001 * 117.49348 * 145.02274 * 23 22 4 43 43 H 1.09003 * 117.50110 * 214.97739 * 24 22 4 44 44 H 1.09005 * 117.50016 * 359.97403 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1264 -0.6443 1.2951 6 7 1.6515 -2.1367 1.1903 7 6 2.6722 -2.9345 0.4979 8 1 3.1064 -2.3681 -0.3260 9 6 3.7708 -3.3798 1.4851 10 6 4.1732 -4.8086 1.0797 11 6 3.3047 -5.1820 -0.1392 12 1 3.8407 -4.9785 -1.0663 13 6 2.8958 -6.6310 -0.0751 14 1 1.8547 -6.8937 0.0412 15 6 3.8508 -7.6214 -0.1649 16 7 5.1186 -7.3016 -0.3069 17 14 3.3441 -9.4176 -0.0847 18 1 3.0586 -9.9130 -1.4552 19 1 4.4450 -10.2164 0.5112 20 1 2.1257 -9.5512 0.7537 21 6 2.0639 -4.2628 -0.0175 22 6 1.4300 -0.0763 2.4953 23 6 2.3380 0.8135 3.3466 24 6 1.9220 -0.5680 3.8580 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.4727 -2.5013 2.1140 33 1 3.3818 -3.3761 2.5033 34 1 4.6313 -2.7147 1.4121 35 1 3.9794 -5.4984 1.9012 36 1 5.2288 -4.8368 0.8092 37 1 5.7904 -7.9984 -0.3704 38 1 1.5923 -4.1198 -0.9897 39 1 1.3526 -4.6674 0.7025 40 1 0.3812 0.2084 2.4117 41 1 3.3698 0.9398 3.0186 42 1 1.8863 1.6835 3.8233 43 1 1.1970 -0.6063 4.6710 44 1 2.6801 -1.3512 3.8668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393492685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:07 Heat of formation + Delta-G solvation = -5.736584 kcal Electronic energy + Delta-G solvation = -19323.072345 eV Core-core repulsion = 16660.635195 eV Total energy + Delta-G solvation = -2662.437150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.21285 -37.07197 -34.89309 -33.13391 -31.48030 -28.00704 -27.17171 -26.94292 -24.72345 -23.27902 -22.36754 -21.93685 -19.42124 -19.18619 -18.56023 -16.23863 -16.15622 -15.58785 -14.73416 -14.55359 -14.13488 -13.80650 -13.69958 -13.40710 -12.57632 -12.39675 -12.29111 -12.04765 -11.78794 -11.62313 -11.43769 -11.38937 -11.01603 -10.85322 -10.76603 -10.60907 -10.52911 -10.29621 -10.26417 -10.03992 -9.92187 -9.77383 -9.48735 -9.02110 -8.67828 -8.32568 -7.84841 -5.95430 -3.97426 3.33977 3.40577 3.44060 3.71409 4.42202 4.50134 4.66169 4.82983 5.02669 5.17622 5.18608 5.31617 5.36481 5.46944 5.54696 5.58888 5.65792 5.72456 5.78696 5.82127 5.86589 5.95083 6.01599 6.05106 6.09725 6.24356 6.27694 6.33715 6.49615 6.53944 6.58385 6.74020 6.81264 6.91519 7.10057 7.22957 7.40221 7.62427 7.76267 7.85722 7.96755 8.09295 8.54253 9.06322 9.66368 11.14538 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.004681 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.734210 B = 5979.600004 C = 6232.108346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.146 4.146 4 C 0.122 3.878 5 H 0.042 0.958 6 N -0.676 5.676 7 C 0.082 3.918 8 H 0.070 0.930 9 C -0.152 4.152 10 C -0.094 4.094 11 C 0.047 3.953 12 H 0.028 0.972 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.099 4.099 22 C -0.150 4.150 23 C -0.178 4.178 24 C -0.184 4.184 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.340 0.660 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.258 0.742 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 16.209 4.834 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.204 4.204 4 C 0.012 3.988 5 H 0.060 0.940 6 N -0.306 5.306 7 C -0.028 4.028 8 H 0.088 0.912 9 C -0.191 4.191 10 C -0.133 4.133 11 C 0.028 3.972 12 H 0.046 0.954 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.137 4.137 22 C -0.168 4.168 23 C -0.215 4.215 24 C -0.221 4.221 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.985 16.202 4.259 17.790 hybrid contribution 0.701 -1.055 0.816 1.507 sum -5.284 15.148 5.074 16.826 Atomic orbital electron populations 1.21766 0.95020 1.02628 1.00106 1.21023 0.96485 0.94729 0.97785 1.21848 1.00581 0.96563 1.01410 1.21085 0.96440 0.88848 0.92427 0.93995 1.60664 1.45014 1.00720 1.24181 1.22585 0.90114 0.94659 0.95400 0.91164 1.22946 0.98244 0.99888 0.98029 1.22027 1.00201 0.91168 0.99893 1.19448 0.90435 0.93421 0.93902 0.95374 1.21180 0.93281 0.90734 1.49623 0.92666 1.24988 0.95017 0.98771 0.95253 1.69976 1.00107 1.32660 1.50312 0.86667 0.78132 0.85465 0.78164 1.20754 1.21388 1.19941 1.22521 0.99211 0.92941 0.98998 1.22614 0.99693 1.03290 0.91214 1.22963 1.00192 0.94103 1.04272 1.22963 1.03927 0.97707 0.97512 0.93297 0.93961 0.91193 0.91235 0.93245 0.93065 0.92575 0.84094 0.93564 0.94079 0.93222 0.93058 0.93208 0.93416 0.92395 0.87080 0.89047 0.89094 0.88876 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.72 37.16 0.32 -1.26 16 2 C -0.08 -0.98 2.84 -90.62 -0.26 -1.24 16 3 C -0.15 -1.50 9.01 37.16 0.33 -1.17 16 4 C 0.12 1.55 1.80 -67.71 -0.12 1.43 16 5 H 0.04 0.59 7.49 -51.93 -0.39 0.20 16 6 N -0.68 -10.07 5.61 -97.99 -0.55 -10.62 16 7 C 0.08 1.46 2.95 -66.04 -0.19 1.26 16 8 H 0.07 1.27 7.50 -51.93 -0.39 0.88 16 9 C -0.15 -2.84 6.32 -25.61 -0.16 -3.00 16 10 C -0.09 -2.21 5.60 -25.62 -0.14 -2.35 16 11 C 0.05 1.17 2.72 -90.12 -0.24 0.93 16 12 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.51 -14.16 8.37 -34.44 -0.29 -14.44 16 14 H 0.06 1.52 7.77 -52.48 -0.41 1.11 16 15 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 16 N -0.89 -26.02 12.63 55.43 0.70 -25.32 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.10 -2.07 5.96 -24.72 -0.15 -2.21 16 22 C -0.15 -1.63 3.91 -90.62 -0.35 -1.98 16 23 C -0.18 -1.74 9.85 -26.69 -0.26 -2.00 16 24 C -0.18 -1.94 9.61 -26.70 -0.26 -2.20 16 25 H 0.05 0.51 6.04 -51.93 -0.31 0.20 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.92 7.75 -51.93 -0.40 0.51 16 28 H 0.07 0.95 7.72 -51.93 -0.40 0.55 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 7.08 -51.93 -0.37 0.17 16 32 H 0.34 5.05 7.19 -39.29 -0.28 4.77 16 33 H 0.05 0.81 7.58 -51.93 -0.39 0.42 16 34 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 36 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.11 1.18 5.94 -51.93 -0.31 0.88 16 41 H 0.09 0.91 8.09 -51.93 -0.42 0.50 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -27.70 337.80 -9.91 -37.61 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.26 Total: 3.33 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -1.87 Total: -26.62 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.15 Total: -35.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.70 -9.91 -37.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393492685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.875 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds