Wall clock time and date at job start Mon Mar 30 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46864 * 2 1 4 4 C 1.52997 * 109.47532 * 120.00269 * 2 1 3 5 5 H 1.08998 * 109.47363 * 185.00222 * 4 2 1 6 6 N 1.46902 * 109.47095 * 64.99686 * 4 2 1 7 7 C 1.46896 * 110.99780 * 88.92069 * 6 4 2 8 8 H 1.09005 * 110.53968 * 323.36448 * 7 6 4 9 9 C 1.54264 * 110.48662 * 85.97875 * 7 6 4 10 10 C 1.53879 * 106.59886 * 142.29109 * 9 7 6 11 11 C 1.54255 * 106.59821 * 359.97438 * 10 9 7 12 12 H 1.09005 * 110.48911 * 95.07046 * 11 10 9 13 13 C 1.50700 * 110.60240 * 217.65805 * 11 10 9 14 14 H 1.08003 * 120.00050 * 114.83924 * 13 11 10 15 15 C 1.37878 * 119.99891 * 294.84933 * 13 11 10 16 16 N 1.31518 * 120.00146 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00177 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47469 * 89.98960 * 17 15 13 19 19 H 1.48497 * 109.47276 * 209.99851 * 17 15 13 20 20 H 1.48506 * 109.46771 * 329.99451 * 17 15 13 21 21 C 1.54892 * 104.20031 * 336.39213 * 11 10 9 22 22 C 1.53005 * 109.46769 * 305.00366 * 4 2 1 23 23 C 1.53005 * 117.49292 * 254.45774 * 22 4 2 24 24 C 1.52997 * 117.49612 * 185.80321 * 22 4 2 25 25 H 1.09000 * 109.47071 * 299.99836 * 1 2 3 26 26 H 1.08995 * 109.47446 * 59.99860 * 1 2 3 27 27 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47025 * 240.00569 * 2 1 3 29 29 H 1.09008 * 109.46841 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47224 * 300.00006 * 3 2 1 31 31 H 1.08994 * 109.47090 * 60.00651 * 3 2 1 32 32 H 1.00902 * 110.99952 * 212.87188 * 6 4 2 33 33 H 1.08996 * 110.03718 * 23.00082 * 9 7 6 34 34 H 1.09008 * 110.07162 * 261.59222 * 9 7 6 35 35 H 1.09002 * 110.03086 * 240.71240 * 10 9 7 36 36 H 1.09005 * 110.03360 * 119.28381 * 10 9 7 37 37 H 0.96999 * 120.00072 * 180.02562 * 16 15 13 38 38 H 1.08999 * 110.75552 * 156.25317 * 21 11 10 39 39 H 1.08997 * 110.75422 * 279.62858 * 21 11 10 40 40 H 1.08992 * 115.55522 * 40.12871 * 22 4 2 41 41 H 1.09000 * 117.49882 * 0.02562 * 23 22 4 42 42 H 1.09001 * 117.49348 * 145.02274 * 23 22 4 43 43 H 1.09003 * 117.50110 * 214.97739 * 24 22 4 44 44 H 1.09005 * 117.50016 * 359.97403 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1264 -0.6443 1.2951 6 7 1.6515 -2.1367 1.1903 7 6 2.6722 -2.9345 0.4979 8 1 3.1064 -2.3681 -0.3260 9 6 3.7708 -3.3798 1.4851 10 6 4.1732 -4.8086 1.0797 11 6 3.3047 -5.1820 -0.1392 12 1 3.8407 -4.9785 -1.0663 13 6 2.8958 -6.6310 -0.0751 14 1 1.8547 -6.8937 0.0412 15 6 3.8508 -7.6214 -0.1649 16 7 5.1186 -7.3016 -0.3069 17 14 3.3441 -9.4176 -0.0847 18 1 3.0586 -9.9130 -1.4552 19 1 4.4450 -10.2164 0.5112 20 1 2.1257 -9.5512 0.7537 21 6 2.0639 -4.2628 -0.0175 22 6 1.4300 -0.0763 2.4953 23 6 2.3380 0.8135 3.3466 24 6 1.9220 -0.5680 3.8580 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.4727 -2.5013 2.1140 33 1 3.3818 -3.3761 2.5033 34 1 4.6313 -2.7147 1.4121 35 1 3.9794 -5.4984 1.9012 36 1 5.2288 -4.8368 0.8092 37 1 5.7904 -7.9984 -0.3704 38 1 1.5923 -4.1198 -0.9897 39 1 1.3526 -4.6674 0.7025 40 1 0.3812 0.2084 2.4117 41 1 3.3698 0.9398 3.0186 42 1 1.8863 1.6835 3.8233 43 1 1.1970 -0.6063 4.6710 44 1 2.6801 -1.3512 3.8668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393492685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:06 Heat of formation + Delta-G solvation = -19.610035 kcal Electronic energy + Delta-G solvation = -19323.673943 eV Core-core repulsion = 16660.635195 eV Total energy + Delta-G solvation = -2663.038748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33615 -38.57211 -35.86704 -34.87243 -33.14489 -29.83653 -28.66965 -27.87999 -26.26146 -24.92900 -23.18163 -22.85410 -21.00007 -20.92527 -19.68322 -18.30530 -17.23743 -16.61995 -16.58082 -16.02765 -15.68437 -15.00232 -14.68889 -14.51162 -14.17131 -13.87444 -13.74981 -13.33059 -13.06769 -12.88644 -12.76056 -12.62274 -12.48352 -12.37622 -12.31504 -11.95893 -11.76630 -11.69590 -11.58741 -11.37711 -11.17155 -11.10979 -10.93645 -10.77361 -10.76174 -10.47843 -9.13135 -8.11671 -6.21151 1.40918 1.41154 1.51834 2.43794 2.84761 3.19135 3.36944 3.73903 3.93604 4.02262 4.07194 4.20248 4.21402 4.27837 4.34938 4.42561 4.55464 4.68017 4.76459 4.80194 4.86153 4.93621 4.94073 5.01708 5.04334 5.07436 5.15485 5.16392 5.22888 5.24937 5.29017 5.37704 5.41849 5.43950 5.46643 5.58195 5.65437 5.66883 5.92331 5.99099 6.29006 6.42795 6.63393 6.90796 7.46403 8.97702 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.004681 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.734210 B = 5979.600004 C = 6232.108346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 C -0.141 4.141 4 C 0.124 3.876 5 H 0.032 0.968 6 N -0.671 5.671 7 C 0.099 3.901 8 H 0.069 0.931 9 C -0.138 4.138 10 C -0.085 4.085 11 C 0.037 3.963 12 H -0.005 1.005 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.923 5.923 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.267 1.267 21 C -0.088 4.088 22 C -0.153 4.153 23 C -0.165 4.165 24 C -0.188 4.188 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.342 0.658 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.259 0.741 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 17.626 5.890 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 C -0.198 4.198 4 C 0.014 3.986 5 H 0.050 0.950 6 N -0.302 5.302 7 C -0.011 4.011 8 H 0.087 0.913 9 C -0.178 4.178 10 C -0.124 4.124 11 C 0.018 3.982 12 H 0.013 0.987 13 C -0.568 4.568 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.779 3.221 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.127 4.127 22 C -0.171 4.171 23 C -0.202 4.202 24 C -0.226 4.226 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.226 17.634 5.317 19.785 hybrid contribution 1.093 -1.484 0.461 1.900 sum -6.133 16.151 5.779 18.217 Atomic orbital electron populations 1.21715 0.94390 1.01712 1.01223 1.21023 0.96993 0.95682 0.96443 1.21794 1.00429 0.95225 1.02377 1.21111 0.96018 0.87425 0.94019 0.95038 1.60591 1.43638 1.01722 1.24213 1.22256 0.89991 0.93535 0.95304 0.91315 1.22821 0.99119 0.96732 0.99097 1.21809 0.98292 0.93874 0.98409 1.19440 0.92290 0.93456 0.92980 0.98686 1.21553 0.93271 0.92393 1.49545 0.92885 1.25783 0.94976 1.03147 0.94903 1.70105 1.01079 1.33943 1.51123 0.85632 0.77971 0.80155 0.78388 1.20120 1.20999 1.19116 1.22336 0.97342 0.93835 0.99149 1.22507 1.00155 1.04120 0.90337 1.23027 0.99874 0.94286 1.03053 1.22995 1.03966 0.98010 0.97589 0.91893 0.93160 0.93075 0.93356 0.93460 0.92254 0.91443 0.83787 0.91858 0.92840 0.95314 0.95688 0.93195 0.93468 0.92664 0.86353 0.89307 0.87209 0.87650 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.72 71.98 0.63 -2.17 16 2 C -0.08 -1.85 2.84 -10.79 -0.03 -1.88 16 3 C -0.14 -2.56 9.01 71.98 0.65 -1.91 16 4 C 0.12 2.94 1.80 44.92 0.08 3.02 16 5 H 0.03 0.83 7.49 -2.39 -0.02 0.81 16 6 N -0.67 -19.16 5.61 -463.94 -2.60 -21.76 16 7 C 0.10 3.49 2.95 46.00 0.14 3.62 16 8 H 0.07 2.46 7.50 -2.38 -0.02 2.45 16 9 C -0.14 -5.11 6.32 31.32 0.20 -4.92 16 10 C -0.08 -4.11 5.60 31.32 0.18 -3.93 16 11 C 0.04 1.93 2.72 -10.47 -0.03 1.90 16 12 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 13 C -0.53 -30.07 8.37 25.60 0.21 -29.85 16 14 H 0.05 2.96 7.77 -2.91 -0.02 2.93 16 15 C 0.01 0.58 5.35 84.65 0.45 1.04 16 16 N -0.92 -55.28 12.63 21.45 0.27 -55.01 16 17 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 C -0.09 -3.74 5.96 31.90 0.19 -3.55 16 22 C -0.15 -2.91 3.91 -10.79 -0.04 -2.96 16 23 C -0.16 -2.71 9.85 30.62 0.30 -2.41 16 24 C -0.19 -3.50 9.61 30.62 0.29 -3.20 16 25 H 0.06 1.14 6.04 -2.39 -0.01 1.12 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.26 7.75 -2.39 -0.02 1.25 16 28 H 0.05 1.29 7.72 -2.38 -0.02 1.27 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 1.08 7.08 -2.39 -0.02 1.06 16 32 H 0.34 9.59 7.19 -89.69 -0.64 8.94 16 33 H 0.06 2.13 7.58 -2.39 -0.02 2.11 16 34 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.03 1.46 7.83 -2.39 -0.02 1.44 16 36 H 0.02 1.29 8.06 -2.38 -0.02 1.27 16 37 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 2.35 8.05 -2.39 -0.02 2.33 16 40 H 0.12 2.13 5.94 -2.39 -0.01 2.12 16 41 H 0.09 1.53 8.09 -2.39 -0.02 1.52 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -60.46 337.80 3.21 -57.25 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.30 Total: 20.05 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 3.22 Total: -47.20 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -2.33 Total: -76.77 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -60.46 3.21 -57.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393492685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.642 kcal (2) G-P(sol) polarization free energy of solvation -60.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds