Wall clock time and date at job start Mon Mar 30 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47142 * 120.00058 * 2 1 3 5 5 H 1.08996 * 109.47321 * 299.99750 * 4 2 1 6 6 N 1.46901 * 109.47328 * 179.97438 * 4 2 1 7 7 C 1.46901 * 111.00042 * 153.07259 * 6 4 2 8 8 H 1.08999 * 110.01725 * 36.33457 * 7 6 4 9 9 C 1.54266 * 110.03107 * 274.94180 * 7 6 4 10 10 C 1.54894 * 104.19305 * 217.10838 * 9 7 6 11 11 C 1.54887 * 102.91763 * 37.84969 * 10 9 7 12 12 H 1.08998 * 110.48030 * 80.83249 * 11 10 9 13 13 C 1.50702 * 110.48348 * 203.47044 * 11 10 9 14 14 H 1.08000 * 119.99622 * 118.55371 * 13 11 10 15 15 C 1.37866 * 120.00217 * 298.54527 * 13 11 10 16 16 N 1.31517 * 120.00546 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99904 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47497 * 90.00051 * 17 15 13 19 19 H 1.48510 * 109.47253 * 210.00009 * 17 15 13 20 20 H 1.48497 * 109.47316 * 329.99750 * 17 15 13 21 21 C 1.53872 * 110.02935 * 157.77778 * 7 6 4 22 22 C 1.53000 * 109.47522 * 59.99869 * 4 2 1 23 23 C 1.52998 * 117.50185 * 128.37284 * 22 4 2 24 24 C 1.53005 * 117.49637 * 59.71669 * 22 4 2 25 25 H 1.09003 * 109.47162 * 300.00024 * 1 2 3 26 26 H 1.08997 * 109.47513 * 59.99997 * 1 2 3 27 27 H 1.09004 * 109.47459 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47162 * 239.99975 * 2 1 3 29 29 H 1.08996 * 109.47190 * 60.00356 * 3 2 1 30 30 H 1.09003 * 109.46897 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47446 * 299.99785 * 3 2 1 32 32 H 1.00893 * 111.00096 * 277.02896 * 6 4 2 33 33 H 1.08997 * 110.49050 * 98.43157 * 9 7 6 34 34 H 1.08999 * 110.49071 * 335.78403 * 9 7 6 35 35 H 1.08999 * 110.75571 * 156.26234 * 10 9 7 36 36 H 1.09007 * 110.75474 * 279.43850 * 10 9 7 37 37 H 0.96997 * 120.00385 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.02955 * 238.56544 * 21 7 6 39 39 H 1.08998 * 110.03853 * 359.94794 * 21 7 6 40 40 H 1.09001 * 115.54988 * 274.05002 * 22 4 2 41 41 H 1.09000 * 117.49454 * 0.02562 * 23 22 4 42 42 H 1.08997 * 117.50008 * 145.02186 * 23 22 4 43 43 H 1.08997 * 117.49684 * 214.98655 * 24 22 4 44 44 H 1.08994 * 117.49914 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 7 3.5090 -0.7218 1.2489 7 6 4.0357 -0.7953 2.6183 8 1 3.3990 -1.4355 3.2291 9 6 4.1091 0.6178 3.2328 10 6 5.4061 0.5968 4.0794 11 6 6.3734 -0.2445 3.2102 12 1 6.8100 0.3694 2.4224 13 6 7.4540 -0.8555 4.0645 14 1 7.5499 -1.9294 4.1276 15 6 8.3203 -0.0437 4.7654 16 7 8.2035 1.2640 4.6889 17 14 9.6603 -0.8013 5.8238 18 1 10.8880 -0.9881 5.0096 19 1 9.9567 0.0993 6.9668 20 1 9.2014 -2.1172 6.3366 21 6 5.4737 -1.3425 2.6012 22 6 1.5300 -2.1638 1.2493 23 6 2.5604 -3.2774 1.4469 24 6 1.9288 -3.0541 0.0706 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 3.8702 -1.4740 0.6818 33 1 3.2425 0.8035 3.8672 34 1 4.1776 1.3717 2.4486 35 1 5.7919 1.6065 4.2200 36 1 5.2318 0.1142 5.0411 37 1 8.8132 1.8351 5.1817 38 1 5.5356 -2.2484 3.2042 39 1 5.7805 -1.5544 1.5770 40 1 0.5396 -2.3122 1.6797 41 1 3.6015 -2.9823 1.5773 42 1 2.2478 -4.1586 2.0071 43 1 1.2009 -3.7885 -0.2742 44 1 2.5541 -2.6120 -0.7050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393492691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:11 Heat of formation + Delta-G solvation = -12.589666 kcal Electronic energy + Delta-G solvation = -19533.809767 eV Core-core repulsion = 16871.075445 eV Total energy + Delta-G solvation = -2662.734322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66798 -38.38740 -35.69736 -34.86291 -33.00069 -29.89820 -28.65964 -27.94004 -26.21865 -25.27187 -23.35444 -22.08619 -21.25101 -20.48054 -19.84657 -18.50794 -17.42472 -16.66638 -16.43867 -15.88004 -15.58595 -15.33128 -14.79063 -14.55217 -14.06802 -13.68079 -13.62136 -13.17366 -12.95564 -12.91323 -12.78522 -12.68104 -12.43788 -12.36354 -12.15482 -11.85542 -11.82371 -11.51306 -11.47048 -11.42392 -11.39442 -11.13107 -10.97647 -10.77350 -10.62010 -10.43196 -9.18187 -8.09032 -6.19498 1.41103 1.41455 1.51752 2.44421 2.90970 3.20733 3.29297 3.81150 3.98054 4.00107 4.05241 4.11571 4.22282 4.36825 4.41079 4.48453 4.60139 4.76311 4.79548 4.83752 4.89759 4.94406 4.98680 5.02457 5.06968 5.10961 5.16861 5.18300 5.22256 5.26040 5.28161 5.34133 5.40777 5.46537 5.51703 5.63323 5.67341 5.68687 5.96251 6.03825 6.33965 6.43252 6.61942 6.92166 7.47872 8.99246 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.005071 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.286063 B = 5520.059724 C = 6068.542144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.137 4.137 4 C 0.121 3.879 5 H 0.068 0.932 6 N -0.677 5.677 7 C 0.104 3.896 8 H 0.043 0.957 9 C -0.103 4.103 10 C -0.092 4.092 11 C 0.045 3.955 12 H -0.008 1.008 13 C -0.533 4.533 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.919 5.919 17 Si 0.952 3.048 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.268 1.268 21 C -0.106 4.106 22 C -0.176 4.176 23 C -0.202 4.202 24 C -0.163 4.163 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.340 0.660 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.030 0.970 37 H 0.259 0.741 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 -5.431 -8.821 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.194 4.194 4 C 0.011 3.989 5 H 0.086 0.914 6 N -0.309 5.309 7 C -0.006 4.006 8 H 0.061 0.939 9 C -0.141 4.141 10 C -0.130 4.130 11 C 0.026 3.974 12 H 0.011 0.989 13 C -0.572 4.572 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.559 5.559 17 Si 0.778 3.222 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.144 4.144 22 C -0.196 4.196 23 C -0.239 4.239 24 C -0.200 4.200 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.161 0.839 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.875 -4.593 -8.796 18.721 hybrid contribution 0.988 -0.977 1.072 1.755 sum -14.887 -5.570 -7.723 17.672 Atomic orbital electron populations 1.21789 0.94175 1.02086 1.01785 1.20965 0.95673 0.95690 0.96836 1.21689 1.01282 0.95794 1.00629 1.21233 0.86691 0.92400 0.98617 0.91371 1.60737 1.07152 1.51983 1.11039 1.21928 0.94171 0.95511 0.88977 0.93950 1.22373 0.96744 0.96940 0.98091 1.22183 0.94466 0.99341 0.97036 1.19358 0.92343 0.92503 0.93150 0.98932 1.21606 1.14915 0.92731 1.27899 0.93002 1.25759 0.99650 0.95241 0.98023 1.70106 1.38603 1.03934 1.43235 0.85652 0.79622 0.78473 0.78481 1.20181 1.20971 1.19206 1.22299 0.94269 0.98461 0.99323 1.23054 0.99888 0.92664 1.03994 1.23185 0.98595 1.00767 1.01362 1.22951 1.03511 1.02468 0.91024 0.93075 0.92083 0.91959 0.91392 0.93908 0.93218 0.92659 0.83905 0.92578 0.92100 0.94471 0.95155 0.93204 0.93244 0.92787 0.87111 0.89632 0.88495 0.87533 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.95 71.98 0.64 -1.70 16 2 C -0.07 -1.50 2.53 -10.80 -0.03 -1.53 16 3 C -0.14 -3.18 9.04 71.98 0.65 -2.53 16 4 C 0.12 2.85 1.85 44.91 0.08 2.93 16 5 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 6 N -0.68 -19.46 5.04 -465.78 -2.35 -21.81 16 7 C 0.10 3.59 1.96 45.64 0.09 3.68 16 8 H 0.04 1.43 7.23 -2.39 -0.02 1.42 16 9 C -0.10 -4.01 6.27 31.67 0.20 -3.81 16 10 C -0.09 -4.49 5.60 31.89 0.18 -4.31 16 11 C 0.05 2.34 2.80 -10.40 -0.03 2.31 16 12 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 13 C -0.53 -30.19 8.49 25.60 0.22 -29.97 16 14 H 0.05 2.87 7.58 -2.91 -0.02 2.85 16 15 C 0.01 0.67 5.33 84.65 0.45 1.13 16 16 N -0.92 -54.92 12.01 21.44 0.26 -54.67 16 17 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C -0.11 -4.35 5.54 31.39 0.17 -4.17 16 22 C -0.18 -3.57 4.53 -10.79 -0.05 -3.62 16 23 C -0.20 -4.41 8.94 30.62 0.27 -4.14 16 24 C -0.16 -2.94 9.33 30.62 0.29 -2.65 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.94 7.14 -2.38 -0.02 0.92 16 28 H 0.07 1.40 7.27 -2.39 -0.02 1.38 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.38 7.60 -2.39 -0.02 1.36 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.34 9.40 5.32 -89.70 -0.48 8.93 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 2.41 8.05 -2.39 -0.02 2.39 16 35 H 0.04 2.00 7.37 -2.39 -0.02 1.99 16 36 H 0.03 1.52 8.05 -2.38 -0.02 1.50 16 37 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.05 2.05 7.68 -2.38 -0.02 2.03 16 39 H 0.05 2.11 7.52 -2.39 -0.02 2.09 16 40 H 0.11 2.03 8.04 -2.39 -0.02 2.02 16 41 H 0.09 2.20 4.92 -2.39 -0.01 2.19 16 42 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.74 7.26 -2.39 -0.02 1.72 16 Total: -1.00 -60.11 331.19 3.54 -56.56 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.47 Total: 21.74 kcal Atomic # 6 Polarization: -51.52 SS G_CDS: 3.14 Total: -48.38 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -2.09 Total: -76.47 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -60.11 3.54 -56.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393492691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.975 kcal (2) G-P(sol) polarization free energy of solvation -60.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds