Wall clock time and date at job start Mon Mar 30 2020 06:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46813 * 2 1 4 4 H 1.08994 * 109.47031 * 55.00487 * 3 2 1 5 5 C 1.52995 * 109.47414 * 295.00068 * 3 2 1 6 6 C 1.53002 * 109.47013 * 300.00035 * 5 3 2 7 7 C 1.52996 * 109.47410 * 300.00250 * 6 5 3 8 8 C 1.52995 * 109.47237 * 59.99887 * 7 6 5 9 9 H 1.09002 * 109.47119 * 60.00000 * 8 7 6 10 10 N 1.46896 * 109.47000 * 180.02562 * 8 7 6 11 11 C 1.47904 * 111.00342 * 296.50181 * 10 8 7 12 12 C 1.53995 * 107.06154 * 214.15963 * 11 10 8 13 13 C 1.54598 * 105.13729 * 1.22133 * 12 11 10 14 14 H 1.09001 * 110.72493 * 263.60267 * 13 12 11 15 15 C 1.50702 * 110.72459 * 140.49593 * 13 12 11 16 16 H 1.07998 * 120.00238 * 241.45451 * 15 13 12 17 17 C 1.37878 * 119.99764 * 61.45061 * 15 13 12 18 18 N 1.31510 * 120.00285 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46965 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47106 * 120.00111 * 19 17 15 22 22 H 1.48501 * 109.47282 * 240.00168 * 19 17 15 23 23 C 1.48533 * 111.00073 * 179.10398 * 10 8 7 24 24 C 1.52999 * 109.47187 * 300.00029 * 8 7 6 25 25 H 1.08998 * 109.46780 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46907 * 299.99962 * 1 2 3 27 27 H 1.08996 * 109.47265 * 59.99959 * 1 2 3 28 28 H 1.09007 * 109.46806 * 240.00351 * 2 1 3 29 29 H 1.09001 * 109.47199 * 120.00542 * 2 1 3 30 30 H 1.09002 * 109.47122 * 60.00330 * 5 3 2 31 31 H 1.09002 * 109.47119 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.46887 * 60.00214 * 6 5 3 33 33 H 1.09000 * 109.47009 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47066 * 299.99855 * 7 6 5 35 35 H 1.09002 * 109.46948 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.91356 * 333.50566 * 11 10 8 37 37 H 1.08994 * 109.91801 * 94.80270 * 11 10 8 38 38 H 1.08998 * 110.31048 * 120.13640 * 12 11 10 39 39 H 1.08999 * 110.30758 * 242.31261 * 12 11 10 40 40 H 0.96998 * 120.00420 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.67373 * 278.15604 * 23 10 8 42 42 H 1.09001 * 110.66917 * 41.28543 * 23 10 8 43 43 H 1.08998 * 109.47311 * 300.00458 * 24 8 7 44 44 H 1.08996 * 109.47425 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 2.2453 1.3700 -2.4889 7 6 3.7701 1.3718 -2.3632 8 6 4.1749 0.6877 -1.0560 9 1 3.8115 -0.3399 -1.0560 10 7 5.6389 0.6900 -0.9350 11 6 6.2614 -0.1042 -2.0164 12 6 7.5170 -0.7695 -1.4229 13 6 7.5453 -0.3290 0.0587 14 1 8.1975 0.5341 0.1921 15 6 7.9817 -1.4669 0.9451 16 1 7.3150 -1.8451 1.7059 17 6 9.2322 -2.0251 0.7849 18 7 10.0443 -1.5643 -0.1412 19 14 9.7729 -3.4360 1.8832 20 1 8.6836 -3.7663 2.8370 21 1 10.0761 -4.6256 1.0476 22 1 10.9885 -3.0383 2.6377 23 6 6.0691 0.0516 0.3353 24 6 3.5649 1.4443 0.1257 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5489 2.1253 -1.3968 31 1 1.9989 3.1542 -1.3074 32 1 1.8820 0.3423 -2.4890 33 1 1.9566 1.8571 -3.4203 34 1 4.1335 2.3995 -2.3632 35 1 4.2047 0.8332 -3.2053 36 1 5.5656 -0.8679 -2.3638 37 1 6.5425 0.5492 -2.8423 38 1 7.4395 -1.8544 -1.4936 39 1 8.4107 -0.4187 -1.9390 40 1 10.9241 -1.9567 -0.2538 41 1 6.0025 0.7580 1.1628 42 1 5.4741 -0.8386 0.5393 43 1 3.9282 2.4720 0.1257 44 1 3.8529 0.9567 1.0570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397585732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:06 Heat of formation + Delta-G solvation = -45.732569 kcal Electronic energy + Delta-G solvation = -19616.787943 eV Core-core repulsion = 16952.616437 eV Total energy + Delta-G solvation = -2664.171506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89281 -38.75201 -35.26902 -33.86989 -32.38538 -30.89291 -29.65180 -28.92491 -26.34616 -24.48568 -23.26615 -22.92409 -21.35722 -21.05517 -19.26171 -18.42661 -17.16330 -16.65181 -16.44023 -15.78033 -15.56649 -15.14864 -14.82482 -14.63703 -14.13694 -14.00082 -13.69437 -13.43197 -13.25107 -13.01990 -12.96661 -12.68039 -12.63164 -12.42174 -12.36065 -12.18434 -12.09338 -11.81128 -11.59170 -11.47332 -11.13616 -11.03262 -10.88575 -10.79182 -10.72592 -10.51794 -9.22289 -8.14870 -6.25684 1.38964 1.40440 1.52175 2.41214 3.13081 3.18286 3.76148 3.79884 4.04253 4.12941 4.18303 4.26078 4.37590 4.40829 4.46117 4.47469 4.56919 4.61892 4.63348 4.72683 4.82448 4.84469 4.89728 4.95181 5.01675 5.07293 5.18089 5.20243 5.23984 5.25137 5.29918 5.30870 5.32681 5.43845 5.52661 5.53411 5.59745 5.67284 5.80525 5.87198 6.04358 6.35553 6.42139 6.84409 7.42332 8.94850 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032739 B = 0.005086 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.049919 B = 5503.827926 C = 6002.792734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.079 4.079 4 H 0.078 0.922 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.106 4.106 8 C 0.078 3.922 9 H 0.030 0.970 10 N -0.523 5.523 11 C 0.048 3.952 12 C -0.093 4.093 13 C 0.042 3.958 14 H 0.000 1.000 15 C -0.534 4.534 16 H 0.053 0.947 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.061 3.939 24 C -0.104 4.104 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.063 0.937 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 5.375 -3.258 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.098 4.098 4 H 0.096 0.904 5 C -0.147 4.147 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.031 4.031 9 H 0.048 0.952 10 N -0.247 5.247 11 C -0.080 4.080 12 C -0.132 4.132 13 C 0.023 3.977 14 H 0.019 0.981 15 C -0.573 4.573 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.781 3.219 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.066 4.066 24 C -0.141 4.141 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.197 5.900 -3.364 19.423 hybrid contribution 0.838 -1.726 0.580 2.004 sum -17.359 4.174 -2.784 18.070 Atomic orbital electron populations 1.21780 0.94553 1.01720 1.02378 1.21668 0.96885 0.96413 1.01288 1.21116 0.93466 0.96409 0.98849 0.90380 1.21576 1.00940 0.98908 0.93316 1.21542 0.93601 1.01084 0.98959 1.21525 0.96760 1.00735 0.95329 1.21894 0.86548 0.97641 0.96986 0.95233 1.64781 1.08290 1.49342 1.02272 1.22787 0.95417 0.95073 0.94719 1.22092 0.95335 0.97695 0.98041 1.19500 0.91173 0.94434 0.92626 0.98136 1.21456 1.00438 1.17516 1.17855 0.92869 1.25762 0.96603 0.99472 0.96666 1.70112 1.08584 1.42900 1.34091 0.85539 0.78258 0.79154 0.78919 1.19074 1.20553 1.20470 1.23018 0.96313 0.95359 0.91948 1.21581 0.95705 1.00296 0.96559 0.92891 0.92386 0.91603 0.92313 0.93501 0.90197 0.91842 0.91872 0.90601 0.91804 0.92769 0.94375 0.90755 0.94975 0.94414 0.93003 0.91667 0.95545 0.91816 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.67 71.98 0.70 -1.65 16 2 C -0.13 -2.58 4.70 30.60 0.14 -2.44 16 3 C -0.08 -1.64 2.66 -10.79 -0.03 -1.66 16 4 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.11 -1.93 5.21 30.59 0.16 -1.77 16 6 C -0.11 -2.19 5.65 30.59 0.17 -2.02 16 7 C -0.11 -2.68 5.16 30.59 0.16 -2.52 16 8 C 0.08 2.37 1.36 44.91 0.06 2.43 16 9 H 0.03 0.96 6.39 -2.39 -0.02 0.95 16 10 N -0.52 -20.08 5.11 -857.87 -4.38 -24.46 16 11 C 0.05 1.90 5.49 86.45 0.47 2.38 16 12 C -0.09 -4.60 5.51 31.47 0.17 -4.42 16 13 C 0.04 2.21 2.98 -10.33 -0.03 2.18 16 14 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 15 C -0.53 -30.33 8.43 25.60 0.22 -30.12 16 16 H 0.05 2.96 7.78 -2.91 -0.02 2.94 16 17 C 0.01 0.80 5.33 84.66 0.45 1.25 16 18 N -0.92 -54.49 12.44 21.45 0.27 -54.22 16 19 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 C 0.06 2.68 4.79 86.65 0.42 3.10 16 24 C -0.10 -2.81 4.56 30.60 0.14 -2.67 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.91 6.56 -2.39 -0.02 0.90 16 28 H 0.06 1.32 4.83 -2.38 -0.01 1.31 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.13 6.57 -2.39 -0.02 1.11 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.22 6.32 -2.39 -0.02 1.21 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.42 7.27 -2.39 -0.02 1.40 16 36 H 0.04 1.42 7.64 -2.39 -0.02 1.40 16 37 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.03 1.67 7.84 -2.39 -0.02 1.65 16 39 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16 40 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 41 H 0.06 2.77 7.66 -2.39 -0.02 2.75 16 42 H 0.03 1.17 7.91 -2.39 -0.02 1.16 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.43 6.92 -2.39 -0.02 1.41 16 Total: -1.00 -60.87 321.36 2.05 -58.82 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.93 Total: 11.48 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.20 Total: -37.95 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -4.11 Total: -78.68 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -60.87 2.05 -58.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.092 kcal (2) G-P(sol) polarization free energy of solvation -60.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds