Wall clock time and date at job start Mon Mar 30 2020 06:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46953 * 2 1 4 4 H 1.08997 * 109.47469 * 54.99493 * 3 2 1 5 5 C 1.53007 * 109.46650 * 294.99841 * 3 2 1 6 6 C 1.52996 * 109.47152 * 299.99811 * 5 3 2 7 7 C 1.53002 * 109.47418 * 300.00416 * 6 5 3 8 8 C 1.52993 * 109.47055 * 59.99984 * 7 6 5 9 9 H 1.09000 * 109.47710 * 59.99881 * 8 7 6 10 10 N 1.46903 * 109.46982 * 180.02562 * 8 7 6 11 11 C 1.47843 * 110.99760 * 304.08351 * 10 8 7 12 12 C 1.54913 * 104.79540 * 213.63890 * 11 10 8 13 13 C 1.55132 * 101.65397 * 37.07250 * 12 11 10 14 14 H 1.09003 * 110.70835 * 82.72443 * 13 12 11 15 15 C 1.50700 * 110.85685 * 205.89238 * 13 12 11 16 16 H 1.08001 * 119.99861 * 113.68437 * 15 13 12 17 17 C 1.37877 * 120.00064 * 293.68725 * 15 13 12 18 18 N 1.31509 * 120.00067 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99772 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47302 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46966 * 120.00220 * 19 17 15 22 22 H 1.48506 * 109.46789 * 239.99793 * 19 17 15 23 23 C 1.47442 * 110.99780 * 183.24537 * 10 8 7 24 24 C 1.52997 * 109.47309 * 175.00133 * 3 2 1 25 25 H 1.09002 * 109.47438 * 300.00065 * 1 2 3 26 26 H 1.09004 * 109.47436 * 60.00176 * 1 2 3 27 27 H 1.08997 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47438 * 239.99935 * 2 1 3 29 29 H 1.09000 * 109.47069 * 119.99183 * 2 1 3 30 30 H 1.09001 * 109.47257 * 60.00118 * 5 3 2 31 31 H 1.08997 * 109.46632 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47266 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47077 * 60.00149 * 6 5 3 34 34 H 1.09002 * 109.46778 * 299.99915 * 7 6 5 35 35 H 1.08995 * 109.47141 * 180.02562 * 7 6 5 36 36 H 1.09003 * 110.37799 * 332.46495 * 11 10 8 37 37 H 1.09000 * 110.37163 * 94.80758 * 11 10 8 38 38 H 1.08996 * 110.98816 * 278.97887 * 12 11 10 39 39 H 1.08996 * 111.01851 * 155.17924 * 12 11 10 40 40 H 0.96996 * 119.99895 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.88819 * 242.66155 * 23 10 8 42 42 H 1.08996 * 109.89479 * 3.84836 * 23 10 8 43 43 H 1.08997 * 109.47450 * 179.97438 * 24 3 2 44 44 H 1.09005 * 109.46765 * 300.00389 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9817 0.8417 5 6 1.6351 2.1265 -1.3075 6 6 2.2452 1.3699 -2.4890 7 6 3.7701 1.3718 -2.3633 8 6 4.1748 0.6878 -1.0559 9 1 3.8115 -0.3399 -1.0558 10 7 5.6389 0.6901 -0.9350 11 6 6.2686 0.0520 -2.1105 12 6 7.5339 -0.6455 -1.5517 13 6 7.0306 -1.1504 -0.1739 14 1 6.4975 -2.0951 -0.2808 15 6 8.1752 -1.2934 0.7959 16 1 8.2315 -0.6523 1.6632 17 6 9.1506 -2.2427 0.5759 18 7 9.0819 -3.0237 -0.4799 19 14 10.5698 -2.4195 1.7777 20 1 10.4166 -1.4293 2.8737 21 1 10.5694 -3.7915 2.3458 22 1 11.8520 -2.1778 1.0685 23 6 6.0700 -0.0300 0.2773 24 6 3.5647 1.4445 0.1257 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 0.5488 2.1252 -1.3970 31 1 1.9988 3.1540 -1.3077 32 1 1.9572 1.8574 -3.4204 33 1 1.8820 0.3422 -2.4889 34 1 4.1334 2.3995 -2.3633 35 1 4.2047 0.8331 -3.2053 36 1 5.5938 -0.6821 -2.5508 37 1 6.5450 0.8052 -2.8484 38 1 8.3511 0.0657 -1.4322 39 1 7.8339 -1.4787 -2.1871 40 1 9.7679 -3.6918 -0.6344 41 1 6.5875 0.6535 0.9503 42 1 5.2046 -0.4632 0.7788 43 1 3.9281 2.4721 0.1252 44 1 3.8531 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397585736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:12 Heat of formation + Delta-G solvation = -30.294645 kcal Electronic energy + Delta-G solvation = -19636.962281 eV Core-core repulsion = 16973.460214 eV Total energy + Delta-G solvation = -2663.502067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.68998 -37.26760 -33.56596 -32.46334 -30.96730 -29.64416 -28.04399 -27.49299 -24.36477 -23.55099 -22.08141 -21.66076 -19.74211 -19.25371 -18.19753 -16.45472 -16.18001 -15.04259 -14.63598 -14.49428 -14.21000 -14.05517 -13.44004 -13.05770 -12.80203 -12.55613 -12.42028 -12.07824 -12.03664 -11.64500 -11.47894 -11.26006 -11.09301 -11.00566 -10.86561 -10.68723 -10.61796 -10.47489 -10.31521 -10.02499 -9.76437 -9.68046 -9.59453 -9.21967 -8.81452 -8.36938 -7.47955 -6.00328 -4.02467 3.30957 3.38992 3.43339 4.44859 4.55206 4.74277 4.80913 5.07445 5.16447 5.26106 5.32912 5.33575 5.48594 5.52396 5.63481 5.67363 5.76243 5.81818 5.82746 5.90781 5.98098 6.02055 6.10504 6.14254 6.22247 6.25499 6.31006 6.35226 6.36963 6.40002 6.52354 6.55352 6.65187 6.72381 6.94382 7.20779 7.24810 7.64458 7.67367 7.92887 7.96244 8.04460 8.45333 8.99831 9.61467 11.09928 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034978 B = 0.004968 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.307795 B = 5635.267500 C = 5972.714159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.085 4.085 4 H 0.066 0.934 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.112 4.112 8 C 0.083 3.917 9 H 0.037 0.963 10 N -0.530 5.530 11 C 0.040 3.960 12 C -0.105 4.105 13 C 0.034 3.966 14 H 0.028 0.972 15 C -0.508 4.508 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.049 3.951 24 C -0.106 4.106 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.033 0.967 43 H 0.066 0.934 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.739 7.793 -2.577 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.104 4.104 4 H 0.085 0.915 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.149 4.149 8 C -0.026 4.026 9 H 0.055 0.945 10 N -0.254 5.254 11 C -0.088 4.088 12 C -0.144 4.144 13 C 0.015 3.985 14 H 0.046 0.954 15 C -0.547 4.547 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.078 4.078 24 C -0.143 4.143 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.489 8.172 -2.627 16.841 hybrid contribution 0.592 -1.077 0.533 1.339 sum -13.898 7.095 -2.094 15.744 Atomic orbital electron populations 1.21815 0.96350 1.01213 1.01503 1.21692 0.95329 0.96827 1.02443 1.21143 0.95822 0.95940 0.97478 0.91537 1.21579 0.99730 0.99132 0.94635 1.21565 0.95854 1.00601 0.97688 1.21596 0.94727 1.01427 0.97194 1.21735 0.88942 0.97295 0.94647 0.94514 1.63649 1.05323 1.53049 1.03423 1.23077 0.96990 0.95865 0.92842 1.22626 0.94446 0.98472 0.98857 1.19815 0.93526 0.92422 0.92783 0.95361 1.21128 1.07279 1.17849 1.08408 0.92455 1.24979 0.98036 0.95573 0.95359 1.69970 1.34514 1.21323 1.27176 0.86566 0.82463 0.77828 0.81334 1.19735 1.21120 1.21058 1.22973 0.97507 0.95992 0.91335 1.21617 0.93417 1.01144 0.98164 0.93083 0.92682 0.93141 0.91341 0.92121 0.92250 0.92159 0.92409 0.91941 0.91545 0.92178 0.95157 0.92270 0.92582 0.91429 0.93161 0.91551 0.94865 0.91499 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.15 0.36 -1.09 16 2 C -0.13 -1.44 4.69 -26.73 -0.13 -1.57 16 3 C -0.08 -0.98 2.66 -90.61 -0.24 -1.22 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.11 -1.19 5.21 -26.73 -0.14 -1.33 16 6 C -0.12 -1.34 5.65 -26.73 -0.15 -1.49 16 7 C -0.11 -1.53 5.02 -26.73 -0.13 -1.66 16 8 C 0.08 1.31 1.22 -67.71 -0.08 1.23 16 9 H 0.04 0.63 6.54 -51.93 -0.34 0.29 16 10 N -0.53 -10.20 5.03 -223.29 -1.12 -11.32 16 11 C 0.04 0.79 5.35 -2.30 -0.01 0.77 16 12 C -0.11 -2.50 5.95 -24.59 -0.15 -2.65 16 13 C 0.03 0.86 2.77 -89.95 -0.25 0.61 16 14 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.51 -14.10 8.48 -34.44 -0.29 -14.39 16 16 H 0.06 1.58 7.53 -52.49 -0.40 1.18 16 17 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 18 N -0.89 -25.84 12.49 55.43 0.69 -25.15 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.05 1.06 5.74 -2.83 -0.02 1.04 16 24 C -0.11 -1.50 4.65 -26.73 -0.12 -1.62 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.85 4.83 -51.93 -0.25 0.60 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.71 6.32 -51.93 -0.33 0.38 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.85 6.85 -51.93 -0.36 0.50 16 36 H 0.03 0.58 7.43 -51.93 -0.39 0.20 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.39 8.05 -51.93 -0.42 0.97 16 39 H 0.07 1.71 7.76 -51.93 -0.40 1.31 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 1.49 7.63 -51.93 -0.40 1.09 16 42 H 0.03 0.68 6.56 -51.93 -0.34 0.34 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.97 6.70 -51.93 -0.35 0.62 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -28.00 319.85 -10.09 -38.09 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.01 Total: -1.16 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.45 Total: -21.73 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.43 Total: -36.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.00 -10.09 -38.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds