Wall clock time and date at job start Mon Mar 30 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46953 * 2 1 4 4 H 1.08997 * 109.47469 * 54.99493 * 3 2 1 5 5 C 1.53007 * 109.46650 * 294.99841 * 3 2 1 6 6 C 1.52996 * 109.47152 * 299.99811 * 5 3 2 7 7 C 1.53002 * 109.47418 * 300.00416 * 6 5 3 8 8 C 1.52993 * 109.47055 * 59.99984 * 7 6 5 9 9 H 1.09000 * 109.47710 * 59.99881 * 8 7 6 10 10 N 1.46903 * 109.46982 * 180.02562 * 8 7 6 11 11 C 1.47843 * 110.99760 * 304.08351 * 10 8 7 12 12 C 1.54913 * 104.79540 * 213.63890 * 11 10 8 13 13 C 1.55132 * 101.65397 * 37.07250 * 12 11 10 14 14 H 1.09003 * 110.70835 * 82.72443 * 13 12 11 15 15 C 1.50700 * 110.85685 * 205.89238 * 13 12 11 16 16 H 1.08001 * 119.99861 * 113.68437 * 15 13 12 17 17 C 1.37877 * 120.00064 * 293.68725 * 15 13 12 18 18 N 1.31509 * 120.00067 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99772 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47302 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46966 * 120.00220 * 19 17 15 22 22 H 1.48506 * 109.46789 * 239.99793 * 19 17 15 23 23 C 1.47442 * 110.99780 * 183.24537 * 10 8 7 24 24 C 1.52997 * 109.47309 * 175.00133 * 3 2 1 25 25 H 1.09002 * 109.47438 * 300.00065 * 1 2 3 26 26 H 1.09004 * 109.47436 * 60.00176 * 1 2 3 27 27 H 1.08997 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47438 * 239.99935 * 2 1 3 29 29 H 1.09000 * 109.47069 * 119.99183 * 2 1 3 30 30 H 1.09001 * 109.47257 * 60.00118 * 5 3 2 31 31 H 1.08997 * 109.46632 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47266 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47077 * 60.00149 * 6 5 3 34 34 H 1.09002 * 109.46778 * 299.99915 * 7 6 5 35 35 H 1.08995 * 109.47141 * 180.02562 * 7 6 5 36 36 H 1.09003 * 110.37799 * 332.46495 * 11 10 8 37 37 H 1.09000 * 110.37163 * 94.80758 * 11 10 8 38 38 H 1.08996 * 110.98816 * 278.97887 * 12 11 10 39 39 H 1.08996 * 111.01851 * 155.17924 * 12 11 10 40 40 H 0.96996 * 119.99895 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.88819 * 242.66155 * 23 10 8 42 42 H 1.08996 * 109.89479 * 3.84836 * 23 10 8 43 43 H 1.08997 * 109.47450 * 179.97438 * 24 3 2 44 44 H 1.09005 * 109.46765 * 300.00389 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9817 0.8417 5 6 1.6351 2.1265 -1.3075 6 6 2.2452 1.3699 -2.4890 7 6 3.7701 1.3718 -2.3633 8 6 4.1748 0.6878 -1.0559 9 1 3.8115 -0.3399 -1.0558 10 7 5.6389 0.6901 -0.9350 11 6 6.2686 0.0520 -2.1105 12 6 7.5339 -0.6455 -1.5517 13 6 7.0306 -1.1504 -0.1739 14 1 6.4975 -2.0951 -0.2808 15 6 8.1752 -1.2934 0.7959 16 1 8.2315 -0.6523 1.6632 17 6 9.1506 -2.2427 0.5759 18 7 9.0819 -3.0237 -0.4799 19 14 10.5698 -2.4195 1.7777 20 1 10.4166 -1.4293 2.8737 21 1 10.5694 -3.7915 2.3458 22 1 11.8520 -2.1778 1.0685 23 6 6.0700 -0.0300 0.2773 24 6 3.5647 1.4445 0.1257 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 0.5488 2.1252 -1.3970 31 1 1.9988 3.1540 -1.3077 32 1 1.9572 1.8574 -3.4204 33 1 1.8820 0.3422 -2.4889 34 1 4.1334 2.3995 -2.3633 35 1 4.2047 0.8331 -3.2053 36 1 5.5938 -0.6821 -2.5508 37 1 6.5450 0.8052 -2.8484 38 1 8.3511 0.0657 -1.4322 39 1 7.8339 -1.4787 -2.1871 40 1 9.7679 -3.6918 -0.6344 41 1 6.5875 0.6535 0.9503 42 1 5.2046 -0.4632 0.7788 43 1 3.9281 2.4721 0.1252 44 1 3.8531 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397585736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:11 Heat of formation + Delta-G solvation = -45.234122 kcal Electronic energy + Delta-G solvation = -19637.610106 eV Core-core repulsion = 16973.460214 eV Total energy + Delta-G solvation = -2664.149892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93744 -38.75195 -35.24134 -33.86545 -32.38312 -30.91876 -29.66497 -28.92683 -26.32120 -24.49252 -23.25706 -22.96850 -21.36816 -21.01654 -19.23913 -18.55131 -17.48378 -16.55664 -16.14489 -15.79694 -15.70136 -15.15735 -14.72970 -14.42513 -14.11059 -14.08007 -13.76743 -13.44651 -13.24700 -12.99666 -12.95738 -12.73312 -12.64961 -12.42677 -12.37195 -12.19196 -12.05358 -11.80754 -11.57294 -11.47899 -11.17688 -11.05040 -10.94789 -10.83605 -10.74725 -10.51157 -9.09878 -8.15973 -6.25716 1.39155 1.40765 1.52839 2.41647 3.12591 3.15621 3.77364 3.80132 4.03495 4.15788 4.18953 4.26840 4.37052 4.41777 4.44170 4.51148 4.53903 4.59301 4.62411 4.73738 4.82374 4.85533 4.90100 4.94764 4.98991 5.07364 5.17791 5.20158 5.22933 5.26930 5.30017 5.31251 5.36230 5.43424 5.53196 5.54090 5.56561 5.66425 5.72535 5.86063 6.18698 6.32523 6.42581 6.83232 7.41943 8.94082 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034978 B = 0.004968 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.307795 B = 5635.267500 C = 5972.714159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.080 4.080 4 H 0.079 0.921 5 C -0.109 4.109 6 C -0.115 4.115 7 C -0.107 4.107 8 C 0.081 3.919 9 H 0.023 0.977 10 N -0.531 5.531 11 C 0.053 3.947 12 C -0.099 4.099 13 C 0.026 3.974 14 H -0.005 1.005 15 C -0.529 4.529 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.064 3.936 24 C -0.102 4.102 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.261 0.739 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.116 9.201 -2.645 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.098 4.098 4 H 0.097 0.903 5 C -0.147 4.147 6 C -0.153 4.153 7 C -0.145 4.145 8 C -0.027 4.027 9 H 0.041 0.959 10 N -0.255 5.255 11 C -0.074 4.074 12 C -0.138 4.138 13 C 0.006 3.994 14 H 0.013 0.987 15 C -0.567 4.567 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.782 3.218 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.063 4.063 24 C -0.140 4.140 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.882 9.590 -2.695 18.748 hybrid contribution 1.014 -1.544 0.551 1.928 sum -14.869 8.045 -2.144 17.041 Atomic orbital electron populations 1.21777 0.94499 1.01693 1.02431 1.21671 0.96942 0.96561 1.01166 1.21122 0.93548 0.96254 0.98925 0.90272 1.21573 1.00929 0.98952 0.93217 1.21548 0.93681 1.00989 0.99050 1.21568 0.96806 1.00860 0.95279 1.21873 0.86542 0.97284 0.97038 0.95863 1.63690 1.07751 1.51941 1.02097 1.22955 0.95013 0.96213 0.93246 1.22420 0.95839 0.97588 0.97917 1.19787 0.93666 0.92246 0.93671 0.98700 1.21455 1.08275 1.18116 1.08855 0.92720 1.25777 1.00586 0.95189 0.97048 1.70091 1.35436 1.21813 1.28719 0.85520 0.79089 0.77963 0.79198 1.19002 1.20556 1.20527 1.22688 0.96722 0.94605 0.92307 1.21588 0.95558 1.00384 0.96463 0.92283 0.91550 0.92991 0.92518 0.93624 0.90227 0.91631 0.90510 0.92126 0.91445 0.92728 0.94711 0.90083 0.94015 0.93721 0.93017 0.92409 0.94405 0.91554 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.67 71.98 0.70 -1.75 16 2 C -0.13 -2.72 4.69 30.60 0.14 -2.58 16 3 C -0.08 -1.66 2.66 -10.79 -0.03 -1.69 16 4 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.11 -1.93 5.21 30.60 0.16 -1.77 16 6 C -0.11 -2.25 5.65 30.59 0.17 -2.08 16 7 C -0.11 -2.74 5.02 30.59 0.15 -2.58 16 8 C 0.08 2.51 1.22 44.91 0.05 2.56 16 9 H 0.02 0.80 6.54 -2.39 -0.02 0.79 16 10 N -0.53 -20.30 5.03 -860.34 -4.33 -24.62 16 11 C 0.05 2.10 5.35 86.78 0.46 2.56 16 12 C -0.10 -4.84 5.95 31.98 0.19 -4.65 16 13 C 0.03 1.35 2.77 -10.36 -0.03 1.32 16 14 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 15 C -0.53 -30.08 8.48 25.60 0.22 -29.86 16 16 H 0.05 3.06 7.53 -2.91 -0.02 3.04 16 17 C 0.01 0.72 5.36 84.66 0.45 1.18 16 18 N -0.92 -54.71 12.49 21.45 0.27 -54.44 16 19 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 C 0.06 2.84 5.74 86.65 0.50 3.34 16 24 C -0.10 -2.79 4.65 30.60 0.14 -2.65 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.96 6.57 -2.38 -0.02 0.95 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.35 4.83 -2.39 -0.01 1.34 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.14 6.56 -2.39 -0.02 1.13 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.23 6.32 -2.39 -0.02 1.22 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.45 6.85 -2.39 -0.02 1.43 16 36 H 0.03 1.34 7.43 -2.39 -0.02 1.32 16 37 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.04 2.12 8.05 -2.39 -0.02 2.10 16 39 H 0.04 2.35 7.76 -2.39 -0.02 2.33 16 40 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 41 H 0.06 2.64 7.63 -2.39 -0.02 2.62 16 42 H 0.04 1.60 6.56 -2.39 -0.02 1.59 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.41 6.70 -2.38 -0.02 1.39 16 Total: -1.00 -60.91 319.85 2.19 -58.71 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.94 Total: 12.52 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.29 Total: -38.66 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -4.06 Total: -79.06 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -60.91 2.19 -58.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.480 kcal (2) G-P(sol) polarization free energy of solvation -60.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds