Wall clock time and date at job start Mon Mar 30 2020 06:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 H 1.08997 * 109.47173 * 55.00083 * 3 2 1 5 5 C 1.52995 * 109.47349 * 295.00057 * 3 2 1 6 6 C 1.52996 * 109.47577 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47350 * 59.99654 * 6 5 3 8 8 C 1.53004 * 109.47476 * 300.00634 * 7 6 5 9 9 H 1.09006 * 109.46912 * 299.99795 * 8 7 6 10 10 N 1.46895 * 109.47545 * 179.97438 * 8 7 6 11 11 C 1.48530 * 110.99936 * 59.10496 * 10 8 7 12 12 C 1.54932 * 103.22772 * 159.72429 * 11 10 8 13 13 C 1.54596 * 102.92184 * 322.58211 * 12 11 10 14 14 H 1.08999 * 110.30998 * 263.04509 * 13 12 11 15 15 C 1.50695 * 110.39335 * 140.91634 * 13 12 11 16 16 H 1.07996 * 120.00338 * 244.23737 * 15 13 12 17 17 C 1.37878 * 119.99874 * 64.23844 * 15 13 12 18 18 N 1.31516 * 120.00106 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99979 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47004 * 60.00161 * 19 17 15 21 21 H 1.48498 * 109.46994 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47358 * 299.99889 * 19 17 15 23 23 C 1.47898 * 111.00003 * 176.49978 * 10 8 7 24 24 C 1.52997 * 109.47090 * 175.00291 * 3 2 1 25 25 H 1.08993 * 109.47401 * 60.00086 * 1 2 3 26 26 H 1.09000 * 109.46658 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47043 * 299.99662 * 1 2 3 28 28 H 1.08998 * 109.47043 * 240.00338 * 2 1 3 29 29 H 1.08992 * 109.46956 * 120.00209 * 2 1 3 30 30 H 1.09006 * 109.47096 * 300.00123 * 5 3 2 31 31 H 1.08999 * 109.47387 * 59.99651 * 5 3 2 32 32 H 1.09000 * 109.47493 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.46762 * 300.00027 * 6 5 3 34 34 H 1.09006 * 109.46883 * 60.00447 * 7 6 5 35 35 H 1.08993 * 109.47607 * 180.02562 * 7 6 5 36 36 H 1.09010 * 110.66758 * 278.15202 * 11 10 8 37 37 H 1.08994 * 110.66826 * 41.28379 * 11 10 8 38 38 H 1.09004 * 110.72549 * 204.22834 * 12 11 10 39 39 H 1.08998 * 110.72865 * 80.94402 * 12 11 10 40 40 H 0.97000 * 119.99945 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.91837 * 333.51083 * 23 10 8 42 42 H 1.08998 * 109.91563 * 94.80580 * 23 10 8 43 43 H 1.09005 * 109.47065 * 299.99847 * 24 3 2 44 44 H 1.08997 * 109.47283 * 59.99859 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 2.1457 3.5689 -1.3076 7 6 3.6705 3.5703 -1.1821 8 6 4.0754 2.8862 0.1252 9 1 3.6410 3.4255 0.9671 10 7 5.5394 2.8870 0.2454 11 6 6.0742 4.2726 0.2268 12 6 7.4739 4.1210 0.8735 13 6 7.2326 3.0649 1.9764 14 1 7.0685 3.5521 2.9375 15 6 8.4030 2.1195 2.0632 16 1 8.2706 1.0734 1.8303 17 6 9.6429 2.5903 2.4402 18 7 9.8040 3.8643 2.7244 19 14 11.0935 1.4184 2.5485 20 1 11.3327 0.8025 1.2186 21 1 12.3038 2.1669 2.9729 22 1 10.7971 0.3541 3.5408 23 6 5.9654 2.3077 1.5378 24 6 3.5648 1.4444 0.1256 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0699 1.5875 -2.1492 31 1 0.5489 2.1252 -1.3969 32 1 1.8569 4.0563 -2.2388 33 1 1.7114 4.1081 -0.4657 34 1 4.1048 3.0310 -2.0240 35 1 4.0341 4.5978 -1.1819 36 1 6.1609 4.6379 -0.7966 37 1 5.4455 4.9356 0.8211 38 1 7.8020 5.0650 1.3087 39 1 8.1986 3.7587 0.1444 40 1 10.6764 4.1955 2.9892 41 1 5.1787 2.4386 2.2807 42 1 6.1901 1.2484 1.4137 43 1 3.8532 0.9571 1.0571 44 1 3.9994 0.9054 -0.7161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397585737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:14 Heat of formation + Delta-G solvation = -34.306511 kcal Electronic energy + Delta-G solvation = -19370.046743 eV Core-core repulsion = 16706.370708 eV Total energy + Delta-G solvation = -2663.676035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.40099 -37.20920 -34.00633 -32.68519 -30.95854 -29.47758 -27.96934 -27.45669 -24.31104 -23.66805 -22.02705 -20.95879 -19.74544 -19.44233 -19.05930 -16.43596 -15.78044 -14.89200 -14.66844 -14.51776 -14.33848 -13.81378 -13.66228 -13.43181 -12.91597 -12.57609 -12.38915 -12.08228 -11.82109 -11.63591 -11.39730 -11.18212 -11.03898 -10.97417 -10.88195 -10.71041 -10.61272 -10.54470 -10.33843 -10.28741 -9.79848 -9.68352 -9.58997 -9.19985 -8.73933 -8.34830 -7.61473 -5.96277 -3.97800 3.36259 3.40349 3.43543 4.47444 4.50066 4.73077 4.77085 5.04573 5.12656 5.20347 5.30000 5.36934 5.43833 5.50941 5.62190 5.66434 5.71062 5.77246 5.81165 5.89062 5.94818 5.99882 6.06601 6.11440 6.13032 6.24037 6.27831 6.29903 6.35103 6.40070 6.45249 6.49652 6.66064 6.70309 6.95399 7.19724 7.27871 7.54401 7.70731 7.92060 7.96588 8.09592 8.50290 9.03445 9.65216 11.13883 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032694 B = 0.004819 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.215314 B = 5809.120102 C = 6419.849286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.086 4.086 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.111 4.111 8 C 0.078 3.922 9 H 0.031 0.969 10 N -0.512 5.512 11 C 0.031 3.969 12 C -0.092 4.092 13 C 0.039 3.961 14 H 0.028 0.972 15 C -0.506 4.506 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.047 3.953 24 C -0.104 4.104 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.259 0.741 41 H 0.017 0.983 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.384 -2.349 -6.799 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.084 0.916 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.031 4.031 9 H 0.049 0.951 10 N -0.236 5.236 11 C -0.097 4.097 12 C -0.130 4.130 13 C 0.020 3.980 14 H 0.046 0.954 15 C -0.544 4.544 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.080 4.080 24 C -0.142 4.142 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.043 -2.528 -7.171 17.754 hybrid contribution 0.532 -0.056 0.818 0.977 sum -15.511 -2.584 -6.354 16.959 Atomic orbital electron populations 1.21820 0.96248 1.01198 1.01711 1.21556 0.95455 0.96623 1.02048 1.21175 0.95938 0.95536 0.97855 0.91632 1.21624 0.99980 0.95781 0.97654 1.21523 0.96112 0.96674 1.01236 1.21577 0.94709 1.00500 0.98079 1.21741 0.89416 0.95643 0.96267 0.95094 1.64765 1.07557 1.17108 1.34208 1.23310 0.97952 0.89128 0.99268 1.22398 0.92481 0.99824 0.98318 1.19490 0.91202 0.93170 0.94094 0.95396 1.21142 0.93362 0.94509 1.45416 0.92590 1.24977 0.98739 0.95046 0.95295 1.69961 1.23533 1.13143 1.46465 0.86688 0.81994 0.81011 0.78468 1.20258 1.21429 1.20369 1.23046 0.97239 1.00161 0.87550 1.21581 0.93641 0.96438 1.02510 0.92632 0.93125 0.92945 0.92032 0.92021 0.92023 0.92266 0.92251 0.92426 0.91353 0.92202 0.91937 0.95530 0.92455 0.92071 0.93105 0.96431 0.91278 0.91959 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.21 5.40 -26.73 -0.14 -1.36 16 3 C -0.09 -0.99 2.19 -90.62 -0.20 -1.18 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.11 -1.18 4.96 -26.74 -0.13 -1.32 16 6 C -0.12 -1.31 5.92 -26.74 -0.16 -1.47 16 7 C -0.11 -1.52 5.04 -26.73 -0.13 -1.65 16 8 C 0.08 1.25 1.64 -67.74 -0.11 1.14 16 9 H 0.03 0.52 7.98 -51.93 -0.41 0.11 16 10 N -0.51 -10.01 5.11 -222.53 -1.14 -11.14 16 11 C 0.03 0.61 5.37 -1.90 -0.01 0.60 16 12 C -0.09 -2.19 5.75 -24.87 -0.14 -2.33 16 13 C 0.04 1.00 2.87 -90.42 -0.26 0.75 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.51 -14.11 8.38 -34.44 -0.29 -14.39 16 16 H 0.06 1.55 7.34 -52.49 -0.39 1.16 16 17 C 0.06 1.71 5.34 -17.82 -0.10 1.61 16 18 N -0.89 -25.94 12.63 55.43 0.70 -25.24 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.05 1.03 5.14 -2.75 -0.01 1.01 16 24 C -0.10 -1.48 4.44 -26.76 -0.12 -1.60 16 25 H 0.05 0.45 6.56 -51.93 -0.34 0.11 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.84 6.92 -51.93 -0.36 0.48 16 36 H 0.06 1.14 7.66 -51.92 -0.40 0.74 16 37 H 0.03 0.51 8.01 -51.93 -0.42 0.09 16 38 H 0.06 1.42 8.12 -51.93 -0.42 1.00 16 39 H 0.06 1.57 7.86 -51.93 -0.41 1.16 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.36 7.63 -51.93 -0.40 -0.04 16 42 H 0.07 1.54 7.39 -51.93 -0.38 1.16 16 43 H 0.06 0.95 7.27 -51.93 -0.38 0.57 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -28.16 327.88 -10.39 -38.56 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.43 Total: -2.54 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -1.45 Total: -21.16 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.44 Total: -36.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.16 -10.39 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.250 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds