Wall clock time and date at job start Mon Mar 30 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 H 1.08997 * 109.47173 * 55.00083 * 3 2 1 5 5 C 1.52995 * 109.47349 * 295.00057 * 3 2 1 6 6 C 1.52996 * 109.47577 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47350 * 59.99654 * 6 5 3 8 8 C 1.53004 * 109.47476 * 300.00634 * 7 6 5 9 9 H 1.09006 * 109.46912 * 299.99795 * 8 7 6 10 10 N 1.46895 * 109.47545 * 179.97438 * 8 7 6 11 11 C 1.48530 * 110.99936 * 59.10496 * 10 8 7 12 12 C 1.54932 * 103.22772 * 159.72429 * 11 10 8 13 13 C 1.54596 * 102.92184 * 322.58211 * 12 11 10 14 14 H 1.08999 * 110.30998 * 263.04509 * 13 12 11 15 15 C 1.50695 * 110.39335 * 140.91634 * 13 12 11 16 16 H 1.07996 * 120.00338 * 244.23737 * 15 13 12 17 17 C 1.37878 * 119.99874 * 64.23844 * 15 13 12 18 18 N 1.31516 * 120.00106 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99979 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47004 * 60.00161 * 19 17 15 21 21 H 1.48498 * 109.46994 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47358 * 299.99889 * 19 17 15 23 23 C 1.47898 * 111.00003 * 176.49978 * 10 8 7 24 24 C 1.52997 * 109.47090 * 175.00291 * 3 2 1 25 25 H 1.08993 * 109.47401 * 60.00086 * 1 2 3 26 26 H 1.09000 * 109.46658 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47043 * 299.99662 * 1 2 3 28 28 H 1.08998 * 109.47043 * 240.00338 * 2 1 3 29 29 H 1.08992 * 109.46956 * 120.00209 * 2 1 3 30 30 H 1.09006 * 109.47096 * 300.00123 * 5 3 2 31 31 H 1.08999 * 109.47387 * 59.99651 * 5 3 2 32 32 H 1.09000 * 109.47493 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.46762 * 300.00027 * 6 5 3 34 34 H 1.09006 * 109.46883 * 60.00447 * 7 6 5 35 35 H 1.08993 * 109.47607 * 180.02562 * 7 6 5 36 36 H 1.09010 * 110.66758 * 278.15202 * 11 10 8 37 37 H 1.08994 * 110.66826 * 41.28379 * 11 10 8 38 38 H 1.09004 * 110.72549 * 204.22834 * 12 11 10 39 39 H 1.08998 * 110.72865 * 80.94402 * 12 11 10 40 40 H 0.97000 * 119.99945 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.91837 * 333.51083 * 23 10 8 42 42 H 1.08998 * 109.91563 * 94.80580 * 23 10 8 43 43 H 1.09005 * 109.47065 * 299.99847 * 24 3 2 44 44 H 1.08997 * 109.47283 * 59.99859 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 2.1457 3.5689 -1.3076 7 6 3.6705 3.5703 -1.1821 8 6 4.0754 2.8862 0.1252 9 1 3.6410 3.4255 0.9671 10 7 5.5394 2.8870 0.2454 11 6 6.0742 4.2726 0.2268 12 6 7.4739 4.1210 0.8735 13 6 7.2326 3.0649 1.9764 14 1 7.0685 3.5521 2.9375 15 6 8.4030 2.1195 2.0632 16 1 8.2706 1.0734 1.8303 17 6 9.6429 2.5903 2.4402 18 7 9.8040 3.8643 2.7244 19 14 11.0935 1.4184 2.5485 20 1 11.3327 0.8025 1.2186 21 1 12.3038 2.1669 2.9729 22 1 10.7971 0.3541 3.5408 23 6 5.9654 2.3077 1.5378 24 6 3.5648 1.4444 0.1256 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0699 1.5875 -2.1492 31 1 0.5489 2.1252 -1.3969 32 1 1.8569 4.0563 -2.2388 33 1 1.7114 4.1081 -0.4657 34 1 4.1048 3.0310 -2.0240 35 1 4.0341 4.5978 -1.1819 36 1 6.1609 4.6379 -0.7966 37 1 5.4455 4.9356 0.8211 38 1 7.8020 5.0650 1.3087 39 1 8.1986 3.7587 0.1444 40 1 10.6764 4.1955 2.9892 41 1 5.1787 2.4386 2.2807 42 1 6.1901 1.2484 1.4137 43 1 3.8532 0.9571 1.0571 44 1 3.9994 0.9054 -0.7161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397585737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:13 Heat of formation + Delta-G solvation = -49.179943 kcal Electronic energy + Delta-G solvation = -19370.691704 eV Core-core repulsion = 16706.370708 eV Total energy + Delta-G solvation = -2664.320995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69057 -38.63204 -35.41021 -34.26334 -32.43561 -30.77743 -29.54991 -28.86167 -26.27989 -24.60564 -23.24375 -22.32638 -21.00663 -20.80159 -20.65345 -18.55299 -17.13697 -16.44025 -16.12867 -15.77492 -15.70276 -15.05194 -14.75382 -14.61581 -14.32838 -13.92853 -13.77354 -13.48785 -13.29370 -13.02005 -12.83623 -12.64327 -12.52232 -12.34075 -12.24701 -12.14887 -12.05007 -11.81698 -11.56621 -11.55719 -11.32402 -11.18465 -10.93500 -10.81605 -10.73689 -10.49617 -9.21659 -8.12979 -6.21819 1.41399 1.43287 1.50785 2.43722 3.10360 3.19140 3.74331 3.80000 4.02361 4.16314 4.17426 4.28122 4.30806 4.42428 4.47010 4.50836 4.55062 4.59992 4.64178 4.70849 4.77947 4.83585 4.85898 4.98668 5.02091 5.09480 5.18128 5.19345 5.22614 5.26136 5.28948 5.34907 5.37285 5.40683 5.43891 5.55243 5.56917 5.66123 5.73318 5.84282 6.19116 6.34112 6.42493 6.86011 7.44757 8.96619 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032694 B = 0.004819 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.215314 B = 5809.120102 C = 6419.849286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.080 4.080 4 H 0.064 0.936 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.107 4.107 8 C 0.076 3.924 9 H 0.026 0.974 10 N -0.519 5.519 11 C 0.045 3.955 12 C -0.084 4.084 13 C 0.030 3.970 14 H -0.003 1.003 15 C -0.526 4.526 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.955 3.045 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.062 3.938 24 C -0.100 4.100 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.260 0.740 41 H 0.024 0.976 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.009 -2.910 -8.013 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.099 4.099 4 H 0.082 0.918 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.145 4.145 8 C -0.032 4.032 9 H 0.044 0.956 10 N -0.243 5.243 11 C -0.082 4.082 12 C -0.123 4.123 13 C 0.011 3.989 14 H 0.015 0.985 15 C -0.564 4.564 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.781 3.219 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.066 4.066 24 C -0.138 4.138 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.686 -3.095 -8.391 19.818 hybrid contribution 1.036 0.129 1.220 1.606 sum -16.650 -2.966 -7.171 18.369 Atomic orbital electron populations 1.21793 0.94742 1.01925 1.02176 1.21535 0.96730 0.95566 1.01752 1.21131 0.93512 0.96653 0.98641 0.91774 1.21616 1.01222 0.95095 0.96749 1.21506 0.93809 0.97380 1.02351 1.21554 0.96851 0.99829 0.96227 1.21890 0.86768 0.97053 0.97497 0.95627 1.64761 1.10365 1.16692 1.32518 1.23173 0.95264 0.89669 1.00140 1.22165 0.94536 0.98193 0.97381 1.19489 0.92535 0.93635 0.93266 0.98478 1.21466 0.94565 0.94766 1.45616 0.92936 1.25761 1.01418 0.96630 0.94881 1.70084 1.24142 1.14746 1.47055 0.85654 0.78577 0.79013 0.78676 1.19695 1.20906 1.19563 1.22746 0.95748 0.99153 0.88928 1.21547 0.95909 0.94974 1.01333 0.91726 0.92356 0.92876 0.91925 0.92831 0.91952 0.90239 0.90372 0.92165 0.91781 0.92397 0.89814 0.94572 0.94290 0.94411 0.93069 0.95724 0.92184 0.93584 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 71.98 0.70 -1.50 16 2 C -0.12 -2.19 5.40 30.60 0.17 -2.02 16 3 C -0.08 -1.68 2.19 -10.80 -0.02 -1.71 16 4 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.11 -1.95 4.96 30.59 0.15 -1.80 16 6 C -0.11 -2.16 5.92 30.59 0.18 -1.97 16 7 C -0.11 -2.70 5.04 30.59 0.15 -2.54 16 8 C 0.08 2.34 1.64 44.90 0.07 2.42 16 9 H 0.03 0.83 7.98 -2.38 -0.02 0.81 16 10 N -0.52 -20.10 5.11 -857.97 -4.38 -24.49 16 11 C 0.05 1.76 5.37 86.65 0.47 2.23 16 12 C -0.08 -4.13 5.75 31.80 0.18 -3.95 16 13 C 0.03 1.57 2.87 -10.66 -0.03 1.54 16 14 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 15 C -0.53 -30.06 8.38 25.60 0.21 -29.85 16 16 H 0.05 2.96 7.34 -2.91 -0.02 2.94 16 17 C 0.01 0.67 5.34 84.65 0.45 1.12 16 18 N -0.92 -54.79 12.63 21.45 0.27 -54.52 16 19 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C 0.06 2.74 5.14 86.45 0.44 3.19 16 24 C -0.10 -2.76 4.44 30.58 0.14 -2.62 16 25 H 0.06 0.84 6.56 -2.39 -0.02 0.82 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 1.15 6.56 -2.39 -0.02 1.13 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.06 1.48 6.92 -2.39 -0.02 1.47 16 36 H 0.08 2.94 7.66 -2.38 -0.02 2.92 16 37 H 0.04 1.35 8.01 -2.39 -0.02 1.33 16 38 H 0.04 2.00 8.12 -2.39 -0.02 1.98 16 39 H 0.04 1.99 7.86 -2.39 -0.02 1.97 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.02 1.03 7.63 -2.39 -0.02 1.01 16 42 H 0.06 2.74 7.39 -2.39 -0.02 2.72 16 43 H 0.05 1.40 7.27 -2.38 -0.02 1.38 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.12 327.88 2.10 -59.02 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.92 Total: 10.68 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.26 Total: -37.47 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -4.11 Total: -79.00 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -61.12 2.10 -59.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.842 kcal (2) G-P(sol) polarization free energy of solvation -61.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds