Wall clock time and date at job start Mon Mar 30 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47109 * 2 1 4 4 H 1.09002 * 109.46922 * 54.27057 * 3 2 1 5 5 C 1.52994 * 109.47338 * 294.26517 * 3 2 1 6 6 C 1.52996 * 109.47413 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46808 * 60.00060 * 6 5 3 8 8 C 1.52993 * 109.47425 * 299.99979 * 7 6 5 9 9 C 1.53001 * 109.47035 * 174.26484 * 3 2 1 10 10 H 1.09003 * 109.47072 * 60.00023 * 9 3 2 11 11 N 1.46906 * 109.47336 * 300.00058 * 9 3 2 12 12 C 1.47903 * 110.99961 * 301.07631 * 11 9 3 13 13 C 1.53989 * 107.05869 * 214.15426 * 12 11 9 14 14 C 1.54593 * 105.13989 * 1.22611 * 13 12 11 15 15 H 1.08999 * 110.72540 * 263.42080 * 14 13 12 16 16 C 1.50701 * 110.72399 * 140.31584 * 14 13 12 17 17 H 1.08002 * 119.99591 * 241.45649 * 16 14 13 18 18 C 1.37872 * 120.00065 * 61.45497 * 16 14 13 19 19 N 1.31516 * 120.00321 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99868 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47039 * 90.00208 * 20 18 16 22 22 H 1.48500 * 109.46923 * 209.99824 * 20 18 16 23 23 H 1.48499 * 109.47271 * 329.99916 * 20 18 16 24 24 C 1.48531 * 110.99814 * 183.68294 * 11 9 3 25 25 H 1.09005 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47198 * 300.00148 * 1 2 3 27 27 H 1.08997 * 109.47127 * 59.99874 * 1 2 3 28 28 H 1.08997 * 109.47653 * 240.00127 * 2 1 3 29 29 H 1.09006 * 109.47213 * 120.00289 * 2 1 3 30 30 H 1.09008 * 109.47126 * 59.99686 * 5 3 2 31 31 H 1.09003 * 109.47031 * 300.00137 * 5 3 2 32 32 H 1.09003 * 109.47324 * 300.00190 * 6 5 3 33 33 H 1.08998 * 109.47510 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47017 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47514 * 60.00270 * 7 6 5 36 36 H 1.09002 * 109.47517 * 300.00030 * 8 7 6 37 37 H 1.08999 * 109.47663 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.91540 * 333.51227 * 12 11 9 39 39 H 1.09000 * 109.91473 * 94.80291 * 12 11 9 40 40 H 1.09003 * 110.30789 * 120.14099 * 13 12 11 41 41 H 1.09000 * 110.30717 * 242.31245 * 13 12 11 42 42 H 0.96995 * 120.00362 * 180.02562 * 19 18 16 43 43 H 1.09006 * 110.66328 * 278.15216 * 24 11 9 44 44 H 1.08993 * 110.67352 * 41.28650 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 0.8343 5 6 1.6511 2.1210 -1.3150 6 6 2.1605 3.5637 -1.3147 7 6 3.6837 3.5666 -1.1703 8 6 4.0726 2.8882 0.1447 9 6 3.5632 1.4449 0.1442 10 1 4.0079 0.9023 -0.6901 11 7 3.9366 0.7935 1.4068 12 6 3.3287 1.4888 2.5620 13 6 4.3313 1.3913 3.7267 14 6 5.5472 0.6303 3.1501 15 1 5.4891 -0.4305 3.3935 16 6 6.8366 1.2222 3.6583 17 1 7.5469 1.6460 2.9637 18 6 7.1095 1.2227 5.0097 19 7 6.2444 0.7071 5.8555 20 14 8.7081 1.9557 5.6395 21 1 8.5100 3.3982 5.9315 22 1 9.1205 1.2517 6.8802 23 1 9.7645 1.8000 4.6075 24 6 5.4047 0.8553 1.6237 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.5659 2.1192 -1.4177 31 1 2.0958 1.5784 -2.1492 32 1 1.7154 4.1060 -0.4806 33 1 1.8839 4.0469 -2.2518 34 1 4.0467 4.5944 -1.1706 35 1 4.1289 3.0242 -2.0045 36 1 3.6276 3.4305 0.9789 37 1 5.1577 2.8906 0.2478 38 1 3.1490 2.5348 2.3133 39 1 2.3921 1.0035 2.8366 40 1 4.6290 2.3874 4.0541 41 1 3.8949 0.8343 4.5558 42 1 6.4362 0.7078 6.8063 43 1 5.9091 0.0638 1.0695 44 1 5.7946 1.8331 1.3410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397638423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:14 Heat of formation + Delta-G solvation = -26.588149 kcal Electronic energy + Delta-G solvation = -19873.115012 eV Core-core repulsion = 17209.773670 eV Total energy + Delta-G solvation = -2663.341342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -39.76486 -36.74168 -33.76983 -33.05326 -30.87034 -29.07813 -28.13078 -27.37087 -24.31795 -23.67333 -22.13230 -20.61435 -20.43688 -19.31764 -18.53134 -16.46515 -15.40479 -14.76808 -14.68098 -14.54901 -14.38827 -13.86416 -13.48761 -13.30412 -12.90160 -12.77737 -12.49598 -12.03504 -11.63070 -11.55166 -11.32604 -11.15629 -11.04226 -10.84396 -10.78968 -10.69862 -10.56351 -10.49850 -10.20229 -10.15661 -9.95306 -9.71258 -9.45866 -9.11993 -8.69651 -8.35753 -7.52512 -5.98948 -4.02111 3.31189 3.38198 3.41225 4.43730 4.66875 4.76525 4.88194 5.14242 5.19851 5.30639 5.34753 5.41584 5.50657 5.59308 5.62229 5.69590 5.76728 5.83052 5.88683 5.96324 6.03394 6.12312 6.14413 6.19158 6.22348 6.27406 6.31124 6.36335 6.40433 6.47324 6.63614 6.64878 6.73356 6.79692 6.95426 7.22793 7.25448 7.68337 7.73233 7.84578 7.95385 8.08860 8.49233 9.00570 9.61927 11.10769 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031658 B = 0.005615 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.242088 B = 4985.470578 C = 5528.843721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.077 4.077 4 H 0.068 0.932 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.158 4.158 9 C 0.083 3.917 10 H 0.073 0.927 11 N -0.512 5.512 12 C 0.030 3.970 13 C -0.101 4.101 14 C 0.053 3.947 15 H 0.034 0.966 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.035 3.965 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 3.106 -12.653 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.095 4.095 4 H 0.086 0.914 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.197 4.197 9 C -0.026 4.026 10 H 0.091 0.909 11 N -0.234 5.234 12 C -0.098 4.098 13 C -0.139 4.139 14 C 0.034 3.966 15 H 0.052 0.948 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.092 4.092 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.768 2.508 -12.487 16.051 hybrid contribution 1.134 1.357 0.504 1.839 sum -8.634 3.866 -11.983 15.267 Atomic orbital electron populations 1.21832 0.96918 1.00972 1.01194 1.21470 0.94396 0.96342 1.02886 1.21179 0.94906 0.96267 0.97195 0.91396 1.21626 1.00255 0.95444 0.97812 1.21542 0.96060 0.96971 1.01085 1.21462 0.95656 1.00088 0.97927 1.22297 1.01885 0.97922 0.97589 1.21783 0.94640 0.92078 0.94122 0.90920 1.64966 1.08698 1.49193 1.00566 1.23004 0.98634 0.95619 0.92501 1.22289 0.95601 1.00801 0.95252 1.19508 0.93202 0.96376 0.87481 0.94814 1.21106 1.03261 1.38992 0.91980 0.92755 1.24956 0.96520 0.95307 0.97040 1.69980 1.35122 1.45067 1.02430 0.86656 0.84150 0.79155 0.78394 1.20807 1.21257 1.19940 1.23456 0.86302 0.99030 1.00421 0.93272 0.93100 0.93219 0.92751 0.90174 0.92058 0.92238 0.92283 0.92569 0.92573 0.92322 0.91550 0.91118 0.94847 0.92444 0.93030 0.92378 0.93102 0.92279 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.68 37.15 0.36 -1.32 16 2 C -0.11 -1.47 5.32 -26.73 -0.14 -1.62 16 3 C -0.08 -1.02 1.44 -90.62 -0.13 -1.15 16 4 H 0.07 0.97 6.99 -51.93 -0.36 0.61 16 5 C -0.11 -1.27 4.97 -26.74 -0.13 -1.40 16 6 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 7 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 8 C -0.16 -2.36 4.54 -26.71 -0.12 -2.48 16 9 C 0.08 1.28 1.81 -67.68 -0.12 1.16 16 10 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 11 N -0.51 -9.53 4.47 -222.46 -0.99 -10.52 16 12 C 0.03 0.58 5.15 -2.76 -0.01 0.57 16 13 C -0.10 -2.38 5.50 -25.38 -0.14 -2.52 16 14 C 0.05 1.35 2.99 -89.91 -0.27 1.08 16 15 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.51 -14.15 8.42 -34.44 -0.29 -14.44 16 17 H 0.05 1.47 7.78 -52.49 -0.41 1.07 16 18 C 0.06 1.77 5.33 -17.82 -0.10 1.67 16 19 N -0.89 -25.65 12.44 55.43 0.69 -24.96 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.03 0.74 5.78 -1.90 -0.01 0.73 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.49 6.59 -51.93 -0.34 0.15 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.22 7.43 -51.93 -0.39 0.84 16 30 H 0.06 0.63 6.59 -51.92 -0.34 0.28 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.06 6.04 -51.93 -0.31 0.75 16 37 H 0.07 1.16 5.99 -51.93 -0.31 0.85 16 38 H 0.03 0.62 5.30 -51.93 -0.28 0.34 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.30 7.84 -51.93 -0.41 0.89 16 41 H 0.06 1.46 8.05 -51.93 -0.42 1.04 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.04 0.89 5.43 -51.93 -0.28 0.61 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -27.47 320.62 -9.98 -37.44 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.06 Total: -0.40 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -1.43 Total: -22.71 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.30 Total: -35.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.47 -9.98 -37.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397638423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.854 kcal (2) G-P(sol) polarization free energy of solvation -27.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds