Wall clock time and date at job start Mon Mar 30 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47109 * 2 1 4 4 H 1.09002 * 109.46922 * 54.27057 * 3 2 1 5 5 C 1.52994 * 109.47338 * 294.26517 * 3 2 1 6 6 C 1.52996 * 109.47413 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46808 * 60.00060 * 6 5 3 8 8 C 1.52993 * 109.47425 * 299.99979 * 7 6 5 9 9 C 1.53001 * 109.47035 * 174.26484 * 3 2 1 10 10 H 1.09003 * 109.47072 * 60.00023 * 9 3 2 11 11 N 1.46906 * 109.47336 * 300.00058 * 9 3 2 12 12 C 1.47903 * 110.99961 * 301.07631 * 11 9 3 13 13 C 1.53989 * 107.05869 * 214.15426 * 12 11 9 14 14 C 1.54593 * 105.13989 * 1.22611 * 13 12 11 15 15 H 1.08999 * 110.72540 * 263.42080 * 14 13 12 16 16 C 1.50701 * 110.72399 * 140.31584 * 14 13 12 17 17 H 1.08002 * 119.99591 * 241.45649 * 16 14 13 18 18 C 1.37872 * 120.00065 * 61.45497 * 16 14 13 19 19 N 1.31516 * 120.00321 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99868 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47039 * 90.00208 * 20 18 16 22 22 H 1.48500 * 109.46923 * 209.99824 * 20 18 16 23 23 H 1.48499 * 109.47271 * 329.99916 * 20 18 16 24 24 C 1.48531 * 110.99814 * 183.68294 * 11 9 3 25 25 H 1.09005 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47198 * 300.00148 * 1 2 3 27 27 H 1.08997 * 109.47127 * 59.99874 * 1 2 3 28 28 H 1.08997 * 109.47653 * 240.00127 * 2 1 3 29 29 H 1.09006 * 109.47213 * 120.00289 * 2 1 3 30 30 H 1.09008 * 109.47126 * 59.99686 * 5 3 2 31 31 H 1.09003 * 109.47031 * 300.00137 * 5 3 2 32 32 H 1.09003 * 109.47324 * 300.00190 * 6 5 3 33 33 H 1.08998 * 109.47510 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47017 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47514 * 60.00270 * 7 6 5 36 36 H 1.09002 * 109.47517 * 300.00030 * 8 7 6 37 37 H 1.08999 * 109.47663 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.91540 * 333.51227 * 12 11 9 39 39 H 1.09000 * 109.91473 * 94.80291 * 12 11 9 40 40 H 1.09003 * 110.30789 * 120.14099 * 13 12 11 41 41 H 1.09000 * 110.30717 * 242.31245 * 13 12 11 42 42 H 0.96995 * 120.00362 * 180.02562 * 19 18 16 43 43 H 1.09006 * 110.66328 * 278.15216 * 24 11 9 44 44 H 1.08993 * 110.67352 * 41.28650 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 0.8343 5 6 1.6511 2.1210 -1.3150 6 6 2.1605 3.5637 -1.3147 7 6 3.6837 3.5666 -1.1703 8 6 4.0726 2.8882 0.1447 9 6 3.5632 1.4449 0.1442 10 1 4.0079 0.9023 -0.6901 11 7 3.9366 0.7935 1.4068 12 6 3.3287 1.4888 2.5620 13 6 4.3313 1.3913 3.7267 14 6 5.5472 0.6303 3.1501 15 1 5.4891 -0.4305 3.3935 16 6 6.8366 1.2222 3.6583 17 1 7.5469 1.6460 2.9637 18 6 7.1095 1.2227 5.0097 19 7 6.2444 0.7071 5.8555 20 14 8.7081 1.9557 5.6395 21 1 8.5100 3.3982 5.9315 22 1 9.1205 1.2517 6.8802 23 1 9.7645 1.8000 4.6075 24 6 5.4047 0.8553 1.6237 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.5659 2.1192 -1.4177 31 1 2.0958 1.5784 -2.1492 32 1 1.7154 4.1060 -0.4806 33 1 1.8839 4.0469 -2.2518 34 1 4.0467 4.5944 -1.1706 35 1 4.1289 3.0242 -2.0045 36 1 3.6276 3.4305 0.9789 37 1 5.1577 2.8906 0.2478 38 1 3.1490 2.5348 2.3133 39 1 2.3921 1.0035 2.8366 40 1 4.6290 2.3874 4.0541 41 1 3.8949 0.8343 4.5558 42 1 6.4362 0.7078 6.8063 43 1 5.9091 0.0638 1.0695 44 1 5.7946 1.8331 1.3410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397638423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:12 Heat of formation + Delta-G solvation = -40.710279 kcal Electronic energy + Delta-G solvation = -19873.727393 eV Core-core repulsion = 17209.773670 eV Total energy + Delta-G solvation = -2663.953723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.08466 -38.21584 -34.97803 -34.76332 -32.52009 -30.23547 -29.82208 -28.80269 -26.24482 -24.69319 -23.55536 -21.81321 -21.67332 -21.01727 -19.90054 -18.42346 -16.96924 -16.43415 -16.34479 -15.71821 -15.67982 -15.02451 -14.74234 -14.59895 -14.34368 -13.94911 -13.79784 -13.62511 -13.12764 -13.01971 -12.93286 -12.60680 -12.52276 -12.27570 -12.20251 -12.05858 -11.92548 -11.86591 -11.60220 -11.53253 -11.18788 -11.14555 -10.98495 -10.81007 -10.64939 -10.48652 -9.04841 -8.13690 -6.24402 1.39993 1.40648 1.51182 2.41777 3.16876 3.26116 3.69445 3.86370 4.03345 4.16402 4.17953 4.29202 4.39626 4.41494 4.47038 4.49636 4.60333 4.63729 4.65644 4.73196 4.82022 4.87556 4.95507 4.99729 5.03044 5.14959 5.18681 5.22126 5.25562 5.27790 5.30903 5.35511 5.38379 5.46907 5.49394 5.60462 5.65259 5.70976 5.83307 5.90228 6.07829 6.37967 6.44278 6.85992 7.43528 8.95739 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031658 B = 0.005615 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.242088 B = 4985.470578 C = 5528.843721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.072 4.072 4 H 0.058 0.942 5 C -0.108 4.108 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.155 4.155 9 C 0.082 3.918 10 H 0.076 0.924 11 N -0.513 5.513 12 C 0.046 3.954 13 C -0.091 4.091 14 C 0.044 3.956 15 H -0.003 1.003 16 C -0.533 4.533 17 H 0.054 0.946 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.267 1.267 24 C 0.049 3.951 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.260 0.740 43 H 0.061 0.939 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 4.185 -14.668 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.090 4.090 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.194 4.194 9 C -0.027 4.027 10 H 0.094 0.906 11 N -0.236 5.236 12 C -0.082 4.082 13 C -0.129 4.129 14 C 0.025 3.975 15 H 0.015 0.985 16 C -0.571 4.571 17 H 0.072 0.928 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.780 3.220 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.079 4.079 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.486 3.590 -14.521 18.267 hybrid contribution 1.356 0.981 1.129 2.019 sum -9.130 4.571 -13.392 16.840 Atomic orbital electron populations 1.21787 0.95192 1.01621 1.01828 1.21423 0.95914 0.95841 1.01754 1.21144 0.92815 0.96659 0.98427 0.92403 1.21599 1.01365 0.95303 0.96305 1.21539 0.94792 0.96956 1.02113 1.21440 0.96859 1.00208 0.96173 1.22229 1.00458 0.97638 0.99030 1.21914 0.96500 0.92143 0.92102 0.90568 1.64945 1.06820 1.50050 1.01779 1.22810 0.97578 0.96713 0.91113 1.22061 0.96111 0.98695 0.96081 1.19461 0.93295 0.94119 0.90620 0.98461 1.21443 1.04174 1.39070 0.92434 0.92794 1.25763 0.99864 0.95667 0.97272 1.70112 1.36944 1.46103 1.02641 0.85606 0.80113 0.78430 0.77819 1.20118 1.20911 1.19117 1.23197 0.88217 0.99106 0.97365 0.92710 0.93481 0.91509 0.92230 0.92981 0.90404 0.91485 0.92652 0.90370 0.91842 0.91503 0.92860 0.93015 0.93529 0.91428 0.95154 0.94850 0.93071 0.92036 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.68 71.98 0.70 -2.20 16 2 C -0.11 -2.71 5.32 30.59 0.16 -2.55 16 3 C -0.07 -1.75 1.44 -10.79 -0.02 -1.77 16 4 H 0.06 1.55 6.99 -2.39 -0.02 1.53 16 5 C -0.11 -2.02 4.97 30.59 0.15 -1.87 16 6 C -0.12 -2.15 5.92 30.59 0.18 -1.96 16 7 C -0.11 -2.34 5.92 30.59 0.18 -2.16 16 8 C -0.15 -4.43 4.54 30.61 0.14 -4.29 16 9 C 0.08 2.42 1.81 44.93 0.08 2.50 16 10 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 11 N -0.51 -19.13 4.47 -857.74 -3.83 -22.97 16 12 C 0.05 1.78 5.15 86.44 0.45 2.23 16 13 C -0.09 -4.46 5.50 31.47 0.17 -4.29 16 14 C 0.04 2.31 2.99 -10.33 -0.03 2.28 16 15 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 16 C -0.53 -30.05 8.42 25.60 0.22 -29.83 16 17 H 0.05 2.97 7.78 -2.91 -0.02 2.95 16 18 C 0.01 0.75 5.33 84.65 0.45 1.21 16 19 N -0.92 -54.68 12.44 21.45 0.27 -54.41 16 20 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.05 2.09 5.78 86.65 0.50 2.59 16 25 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.09 6.59 -2.39 -0.02 1.08 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.56 7.43 -2.38 -0.02 1.54 16 30 H 0.08 1.25 6.59 -2.38 -0.02 1.24 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.05 1.65 6.04 -2.39 -0.01 1.64 16 37 H 0.05 1.66 5.99 -2.39 -0.01 1.65 16 38 H 0.05 1.71 5.30 -2.39 -0.01 1.70 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 41 H 0.03 1.75 8.05 -2.39 -0.02 1.73 16 42 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.06 2.58 8.14 -2.38 -0.02 2.57 16 44 H 0.04 1.85 5.43 -2.39 -0.01 1.84 16 Total: -1.00 -60.36 320.62 2.73 -57.63 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.94 Total: 13.58 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 3.33 Total: -40.12 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -3.57 Total: -77.38 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -60.36 2.73 -57.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397638423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.924 kcal (2) G-P(sol) polarization free energy of solvation -60.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds