Wall clock time and date at job start Mon Mar 30 2020 06:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46917 * 2 1 4 4 H 1.08999 * 109.47483 * 54.99977 * 3 2 1 5 5 C 1.53003 * 109.46967 * 294.99805 * 3 2 1 6 6 C 1.52995 * 109.47234 * 300.00034 * 5 3 2 7 7 C 1.52994 * 109.47580 * 299.99974 * 6 5 3 8 8 C 1.53003 * 109.46816 * 59.99770 * 7 6 5 9 9 C 1.53001 * 109.47472 * 300.00013 * 8 7 6 10 10 H 1.08994 * 109.47170 * 300.00464 * 9 8 7 11 11 N 1.46899 * 109.47181 * 179.97438 * 9 8 7 12 12 C 1.48528 * 110.99803 * 187.39651 * 11 9 8 13 13 C 1.54937 * 103.22672 * 200.28070 * 12 11 9 14 14 C 1.54596 * 102.92000 * 37.41594 * 13 12 11 15 15 H 1.09002 * 110.39171 * 97.00219 * 14 13 12 16 16 C 1.50697 * 110.30827 * 219.12420 * 14 13 12 17 17 H 1.07999 * 119.99788 * 111.67453 * 16 14 13 18 18 C 1.37879 * 120.00077 * 291.67058 * 16 14 13 19 19 N 1.31509 * 120.00170 * 353.66698 * 18 16 14 20 20 Si 1.86799 * 119.99799 * 173.67066 * 18 16 14 21 21 H 1.48503 * 109.47155 * 265.19167 * 20 18 16 22 22 H 1.48505 * 109.47379 * 25.19516 * 20 18 16 23 23 H 1.48506 * 109.47199 * 145.19441 * 20 18 16 24 24 C 1.47901 * 110.99876 * 70.00417 * 11 9 8 25 25 H 1.09000 * 109.47045 * 300.00359 * 1 2 3 26 26 H 1.09000 * 109.47461 * 60.00142 * 1 2 3 27 27 H 1.09003 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47242 * 240.00270 * 2 1 3 29 29 H 1.09000 * 109.47461 * 119.99858 * 2 1 3 30 30 H 1.09003 * 109.46697 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.47105 * 60.00545 * 5 3 2 32 32 H 1.09001 * 109.47293 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47157 * 60.00431 * 6 5 3 34 34 H 1.09003 * 109.47249 * 300.00401 * 7 6 5 35 35 H 1.08999 * 109.47343 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47105 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47203 * 60.00148 * 8 7 6 38 38 H 1.08998 * 110.67305 * 318.71811 * 12 11 9 39 39 H 1.09000 * 110.66539 * 81.84878 * 12 11 9 40 40 H 1.09000 * 110.72607 * 279.05911 * 13 12 11 41 41 H 1.09004 * 110.72262 * 155.77479 * 13 12 11 42 42 H 0.97005 * 120.00360 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.91585 * 26.48746 * 24 11 9 44 44 H 1.08999 * 109.91474 * 265.19902 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 2.2453 1.3699 -2.4890 7 6 3.7700 1.3718 -2.3633 8 6 4.1748 0.6878 -1.0559 9 6 3.5648 1.4444 0.1257 10 1 3.9281 2.4721 0.1257 11 7 3.9530 0.7873 1.3809 12 6 3.2382 1.3849 2.5377 13 6 4.1169 0.9767 3.7467 14 6 5.5524 1.0854 3.1831 15 1 5.9938 2.0455 3.4508 16 6 6.4048 -0.0439 3.7015 17 1 6.7492 -0.8141 3.0272 18 6 6.7452 -0.0940 5.0367 19 7 6.4330 0.9051 5.8328 20 14 7.6499 -1.5810 5.7147 21 1 6.6698 -2.5373 6.2893 22 1 8.4043 -2.2431 4.6202 23 1 8.5951 -1.1448 6.7739 24 6 5.3938 0.9776 1.6552 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.9989 3.1541 -1.3076 31 1 0.5488 2.1253 -1.3970 32 1 1.9565 1.8569 -3.4204 33 1 1.8819 0.3423 -2.4890 34 1 4.1334 2.3995 -2.3633 35 1 4.2046 0.8323 -3.2049 36 1 5.2612 0.6887 -0.9666 37 1 3.8115 -0.3399 -1.0559 38 1 3.1934 2.4699 2.4436 39 1 2.2370 0.9641 2.6303 40 1 3.8996 -0.0464 4.0536 41 1 3.9753 1.6681 4.5774 42 1 6.6721 0.8697 6.7723 43 1 5.7445 1.8937 1.1799 44 1 5.9587 0.1231 1.2826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397638425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:20 Heat of formation + Delta-G solvation = -27.372690 kcal Electronic energy + Delta-G solvation = -19854.991830 eV Core-core repulsion = 17191.616468 eV Total energy + Delta-G solvation = -2663.375362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77698 -37.00589 -33.18102 -33.02179 -31.00575 -29.37009 -28.07924 -27.48126 -24.30957 -23.47714 -22.04211 -21.62468 -19.97279 -19.11369 -18.03369 -16.46452 -16.05597 -15.17294 -14.70973 -14.45052 -14.22161 -13.85147 -13.30614 -13.05674 -12.97617 -12.59025 -12.28146 -12.06433 -11.84561 -11.61488 -11.42777 -11.26209 -11.01190 -10.97244 -10.82971 -10.75803 -10.56935 -10.40686 -10.22370 -9.98610 -9.74764 -9.64733 -9.58430 -9.17882 -8.76218 -8.34390 -7.60588 -5.97528 -3.97596 3.34293 3.41208 3.44706 4.48440 4.55950 4.80465 4.83659 5.10474 5.25941 5.32409 5.35969 5.41417 5.47219 5.59698 5.65040 5.72381 5.77437 5.79981 5.88157 5.92676 6.06698 6.09261 6.12323 6.19962 6.22584 6.25976 6.28239 6.31935 6.36201 6.45592 6.56076 6.65629 6.68678 6.80152 6.95155 7.16151 7.25354 7.53715 7.65710 7.91665 7.96239 8.08498 8.50523 9.04344 9.65039 11.13072 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.005345 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.212870 B = 5237.216654 C = 5488.449320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.080 4.080 4 H 0.067 0.933 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.110 4.110 9 C 0.082 3.918 10 H 0.032 0.968 11 N -0.508 5.508 12 C 0.033 3.967 13 C -0.097 4.097 14 C 0.039 3.961 15 H 0.033 0.967 16 C -0.505 4.505 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.288 1.288 24 C 0.047 3.953 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.259 0.741 43 H 0.017 0.983 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 1.580 -13.687 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.099 4.099 4 H 0.085 0.915 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.147 4.147 9 C -0.027 4.027 10 H 0.050 0.950 11 N -0.232 5.232 12 C -0.094 4.094 13 C -0.136 4.136 14 C 0.020 3.980 15 H 0.051 0.949 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.199 1.199 23 H -0.214 1.214 24 C -0.080 4.080 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.934 1.089 -13.563 16.847 hybrid contribution 0.706 0.198 0.579 0.935 sum -9.227 1.287 -12.984 15.981 Atomic orbital electron populations 1.21844 0.97017 1.00960 1.01161 1.21571 0.94257 0.96307 1.03174 1.21190 0.94850 0.96837 0.96995 0.91477 1.21587 1.00005 0.98879 0.94769 1.21561 0.95716 1.00862 0.97531 1.21521 0.95720 1.00628 0.97647 1.21540 1.00308 1.00042 0.92857 1.21765 0.94303 0.95297 0.91306 0.95041 1.64756 1.05806 1.52203 1.00467 1.23267 0.97986 0.95655 0.92540 1.22470 0.96156 1.00516 0.94476 1.19498 0.92847 0.97763 0.87892 0.94909 1.21182 1.31101 1.08440 0.93584 0.92516 1.24973 0.95869 0.95850 0.97292 1.69973 1.47798 1.30219 1.05108 0.86638 0.79570 0.83376 0.78761 1.20764 1.19903 1.21430 1.23065 0.87260 0.98156 0.99557 0.93171 0.93193 0.93289 0.91913 0.90312 0.92555 0.91987 0.92737 0.91606 0.92487 0.92302 0.92148 0.91037 0.95554 0.91830 0.92119 0.92736 0.93163 0.96448 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 37.16 0.36 -1.33 16 2 C -0.12 -1.50 4.56 -26.73 -0.12 -1.63 16 3 C -0.08 -1.06 1.71 -90.61 -0.16 -1.22 16 4 H 0.07 0.95 6.79 -51.93 -0.35 0.60 16 5 C -0.11 -1.28 5.21 -26.73 -0.14 -1.42 16 6 C -0.12 -1.25 5.65 -26.74 -0.15 -1.40 16 7 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 8 C -0.11 -1.54 4.98 -26.73 -0.13 -1.68 16 9 C 0.08 1.28 1.43 -67.71 -0.10 1.19 16 10 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 11 N -0.51 -9.58 4.27 -222.51 -0.95 -10.53 16 12 C 0.03 0.64 4.97 -1.90 -0.01 0.63 16 13 C -0.10 -2.28 6.18 -24.87 -0.15 -2.44 16 14 C 0.04 0.98 2.77 -90.42 -0.25 0.73 16 15 H 0.03 0.91 8.12 -51.93 -0.42 0.49 16 16 C -0.50 -13.99 8.32 -34.44 -0.29 -14.28 16 17 H 0.06 1.57 7.36 -52.49 -0.39 1.18 16 18 C 0.06 1.72 5.33 -17.82 -0.09 1.63 16 19 N -0.89 -25.99 13.01 55.43 0.72 -25.27 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.05 1.01 5.45 -2.76 -0.02 0.99 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.50 6.57 -51.93 -0.34 0.16 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.79 4.83 -51.93 -0.25 0.54 16 29 H 0.08 1.21 7.01 -51.93 -0.36 0.85 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.69 6.32 -51.93 -0.33 0.36 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.91 7.52 -51.93 -0.39 0.52 16 37 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 38 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 39 H 0.06 1.13 7.29 -51.93 -0.38 0.75 16 40 H 0.06 1.51 7.86 -51.93 -0.41 1.10 16 41 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 43 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 44 H 0.07 1.53 7.39 -51.93 -0.38 1.14 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -27.89 319.14 -9.84 -37.74 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.99 Total: -1.59 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -1.41 Total: -21.71 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.23 Total: -35.80 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.89 -9.84 -37.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397638425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.364 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds