Wall clock time and date at job start Mon Mar 30 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46917 * 2 1 4 4 H 1.08999 * 109.47483 * 54.99977 * 3 2 1 5 5 C 1.53003 * 109.46967 * 294.99805 * 3 2 1 6 6 C 1.52995 * 109.47234 * 300.00034 * 5 3 2 7 7 C 1.52994 * 109.47580 * 299.99974 * 6 5 3 8 8 C 1.53003 * 109.46816 * 59.99770 * 7 6 5 9 9 C 1.53001 * 109.47472 * 300.00013 * 8 7 6 10 10 H 1.08994 * 109.47170 * 300.00464 * 9 8 7 11 11 N 1.46899 * 109.47181 * 179.97438 * 9 8 7 12 12 C 1.48528 * 110.99803 * 187.39651 * 11 9 8 13 13 C 1.54937 * 103.22672 * 200.28070 * 12 11 9 14 14 C 1.54596 * 102.92000 * 37.41594 * 13 12 11 15 15 H 1.09002 * 110.39171 * 97.00219 * 14 13 12 16 16 C 1.50697 * 110.30827 * 219.12420 * 14 13 12 17 17 H 1.07999 * 119.99788 * 111.67453 * 16 14 13 18 18 C 1.37879 * 120.00077 * 291.67058 * 16 14 13 19 19 N 1.31509 * 120.00170 * 353.66698 * 18 16 14 20 20 Si 1.86799 * 119.99799 * 173.67066 * 18 16 14 21 21 H 1.48503 * 109.47155 * 265.19167 * 20 18 16 22 22 H 1.48505 * 109.47379 * 25.19516 * 20 18 16 23 23 H 1.48506 * 109.47199 * 145.19441 * 20 18 16 24 24 C 1.47901 * 110.99876 * 70.00417 * 11 9 8 25 25 H 1.09000 * 109.47045 * 300.00359 * 1 2 3 26 26 H 1.09000 * 109.47461 * 60.00142 * 1 2 3 27 27 H 1.09003 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47242 * 240.00270 * 2 1 3 29 29 H 1.09000 * 109.47461 * 119.99858 * 2 1 3 30 30 H 1.09003 * 109.46697 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.47105 * 60.00545 * 5 3 2 32 32 H 1.09001 * 109.47293 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47157 * 60.00431 * 6 5 3 34 34 H 1.09003 * 109.47249 * 300.00401 * 7 6 5 35 35 H 1.08999 * 109.47343 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47105 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47203 * 60.00148 * 8 7 6 38 38 H 1.08998 * 110.67305 * 318.71811 * 12 11 9 39 39 H 1.09000 * 110.66539 * 81.84878 * 12 11 9 40 40 H 1.09000 * 110.72607 * 279.05911 * 13 12 11 41 41 H 1.09004 * 110.72262 * 155.77479 * 13 12 11 42 42 H 0.97005 * 120.00360 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.91585 * 26.48746 * 24 11 9 44 44 H 1.08999 * 109.91474 * 265.19902 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 2.2453 1.3699 -2.4890 7 6 3.7700 1.3718 -2.3633 8 6 4.1748 0.6878 -1.0559 9 6 3.5648 1.4444 0.1257 10 1 3.9281 2.4721 0.1257 11 7 3.9530 0.7873 1.3809 12 6 3.2382 1.3849 2.5377 13 6 4.1169 0.9767 3.7467 14 6 5.5524 1.0854 3.1831 15 1 5.9938 2.0455 3.4508 16 6 6.4048 -0.0439 3.7015 17 1 6.7492 -0.8141 3.0272 18 6 6.7452 -0.0940 5.0367 19 7 6.4330 0.9051 5.8328 20 14 7.6499 -1.5810 5.7147 21 1 6.6698 -2.5373 6.2893 22 1 8.4043 -2.2431 4.6202 23 1 8.5951 -1.1448 6.7739 24 6 5.3938 0.9776 1.6552 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.9989 3.1541 -1.3076 31 1 0.5488 2.1253 -1.3970 32 1 1.9565 1.8569 -3.4204 33 1 1.8819 0.3423 -2.4890 34 1 4.1334 2.3995 -2.3633 35 1 4.2046 0.8323 -3.2049 36 1 5.2612 0.6887 -0.9666 37 1 3.8115 -0.3399 -1.0559 38 1 3.1934 2.4699 2.4436 39 1 2.2370 0.9641 2.6303 40 1 3.8996 -0.0464 4.0536 41 1 3.9753 1.6681 4.5774 42 1 6.6721 0.8697 6.7723 43 1 5.7445 1.8937 1.1799 44 1 5.9587 0.1231 1.2826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397638425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:19 Heat of formation + Delta-G solvation = -41.862999 kcal Electronic energy + Delta-G solvation = -19855.620177 eV Core-core repulsion = 17191.616468 eV Total energy + Delta-G solvation = -2664.003709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02716 -38.53102 -34.97009 -34.15667 -32.62169 -30.53742 -29.72861 -28.91524 -26.27089 -24.50145 -23.27316 -22.81463 -21.45035 -20.97889 -19.09925 -18.56473 -17.35057 -16.46357 -16.42673 -15.97775 -15.31826 -15.27340 -14.64257 -14.51223 -14.09743 -13.87549 -13.67700 -13.57076 -13.20527 -13.10901 -12.85838 -12.72095 -12.49024 -12.39800 -12.28685 -12.12340 -11.97779 -11.89987 -11.58337 -11.42147 -11.20431 -11.04696 -10.89312 -10.72726 -10.67862 -10.50321 -9.17626 -8.14319 -6.21435 1.40349 1.41694 1.52087 2.43388 3.13170 3.19340 3.75625 3.83088 4.04667 4.17450 4.26225 4.32061 4.37226 4.41886 4.47853 4.51722 4.54953 4.62778 4.65362 4.78310 4.82201 4.86699 4.91301 4.95199 5.02956 5.14143 5.18434 5.20772 5.25534 5.28843 5.32752 5.35176 5.37052 5.46057 5.54377 5.58197 5.61597 5.71880 5.77679 5.83711 6.20550 6.35154 6.44073 6.87039 7.44731 8.96207 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.005345 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.212870 B = 5237.216654 C = 5488.449320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.076 4.076 4 H 0.059 0.941 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.107 4.107 9 C 0.080 3.920 10 H 0.022 0.978 11 N -0.510 5.510 12 C 0.049 3.951 13 C -0.091 4.091 14 C 0.031 3.969 15 H -0.001 1.001 16 C -0.522 4.522 17 H 0.052 0.948 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.267 1.267 23 H -0.284 1.284 24 C 0.061 3.939 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.022 0.978 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 1.099 -15.573 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.095 4.095 4 H 0.077 0.923 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.145 4.145 9 C -0.028 4.028 10 H 0.040 0.960 11 N -0.234 5.234 12 C -0.078 4.078 13 C -0.129 4.129 14 C 0.012 3.988 15 H 0.017 0.983 16 C -0.561 4.561 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.192 1.192 23 H -0.209 1.209 24 C -0.067 4.067 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.226 0.608 -15.467 19.121 hybrid contribution 1.127 0.376 1.163 1.663 sum -10.099 0.983 -14.304 17.537 Atomic orbital electron populations 1.21800 0.95246 1.01613 1.01838 1.21503 0.95769 0.95631 1.02019 1.21171 0.92664 0.97377 0.98312 0.92265 1.21574 1.01126 0.98624 0.93502 1.21557 0.94513 1.01189 0.98066 1.21500 0.96865 1.00414 0.96286 1.21518 0.99187 1.00006 0.93765 1.21911 0.96361 0.94586 0.89976 0.95966 1.64752 1.03935 1.52954 1.01757 1.23109 0.97943 0.96111 0.90687 1.22254 0.96203 0.98852 0.95632 1.19476 0.93366 0.95319 0.90675 0.98314 1.21490 1.31594 1.08971 0.94008 0.92930 1.25747 0.96783 0.98506 0.97561 1.70092 1.48883 1.31949 1.05355 0.85611 0.78445 0.79893 0.78134 1.20200 1.19161 1.20925 1.22767 0.89197 0.97973 0.96737 0.93440 0.91534 0.92722 0.91427 0.93134 0.92521 0.90270 0.90666 0.91297 0.92479 0.90881 0.93746 0.91374 0.94884 0.89837 0.94092 0.94550 0.93069 0.95957 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.67 71.98 0.70 -2.17 16 2 C -0.11 -2.69 4.56 30.59 0.14 -2.55 16 3 C -0.08 -1.88 1.71 -10.79 -0.02 -1.90 16 4 H 0.06 1.56 6.79 -2.39 -0.02 1.54 16 5 C -0.11 -2.11 5.21 30.59 0.16 -1.95 16 6 C -0.12 -2.01 5.65 30.59 0.17 -1.83 16 7 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 8 C -0.11 -2.88 4.98 30.60 0.15 -2.72 16 9 C 0.08 2.42 1.43 44.92 0.06 2.48 16 10 H 0.02 0.73 7.81 -2.39 -0.02 0.71 16 11 N -0.51 -19.22 4.27 -857.89 -3.67 -22.88 16 12 C 0.05 1.89 4.97 86.65 0.43 2.32 16 13 C -0.09 -4.39 6.18 31.80 0.20 -4.19 16 14 C 0.03 1.61 2.77 -10.66 -0.03 1.58 16 15 H 0.00 -0.08 8.12 -2.39 -0.02 -0.10 16 16 C -0.52 -29.76 8.32 25.60 0.21 -29.54 16 17 H 0.05 2.97 7.36 -2.91 -0.02 2.95 16 18 C 0.01 0.71 5.33 84.66 0.45 1.16 16 19 N -0.92 -55.17 13.01 21.45 0.28 -54.89 16 20 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 C 0.06 2.68 5.45 86.44 0.47 3.15 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.08 6.57 -2.39 -0.02 1.06 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.55 4.83 -2.39 -0.01 1.54 16 29 H 0.05 1.50 7.01 -2.39 -0.02 1.49 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.28 6.57 -2.38 -0.02 1.27 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.18 6.32 -2.39 -0.02 1.17 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 1.32 7.52 -2.38 -0.02 1.30 16 37 H 0.07 1.88 6.54 -2.39 -0.02 1.86 16 38 H 0.03 1.23 8.00 -2.39 -0.02 1.21 16 39 H 0.08 2.90 7.29 -2.39 -0.02 2.88 16 40 H 0.04 2.10 7.86 -2.39 -0.02 2.08 16 41 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 43 H 0.02 0.94 7.57 -2.38 -0.02 0.92 16 44 H 0.06 2.73 7.39 -2.39 -0.02 2.71 16 Total: -1.00 -60.99 319.14 2.86 -58.13 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.94 Total: 11.11 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.28 Total: -38.27 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -3.39 Total: -77.77 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -60.99 2.86 -58.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397638425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.268 kcal (2) G-P(sol) polarization free energy of solvation -60.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds