Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47357 * 2 1 4 4 H 1.08996 * 109.47346 * 54.29345 * 3 2 1 5 5 C 1.52999 * 109.46904 * 294.29784 * 3 2 1 6 6 C 1.53006 * 109.46758 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47465 * 60.00095 * 6 5 3 8 8 C 1.53007 * 109.46477 * 299.99660 * 7 6 5 9 9 C 1.52997 * 109.47140 * 60.00446 * 8 7 6 10 10 H 1.09004 * 109.47243 * 59.99561 * 9 8 7 11 11 N 1.46903 * 109.47114 * 179.97438 * 9 8 7 12 12 C 1.47844 * 110.99868 * 61.78829 * 11 9 8 13 13 C 1.54904 * 104.79555 * 213.63567 * 12 11 9 14 14 C 1.55139 * 101.65488 * 37.07408 * 13 12 11 15 15 H 1.08993 * 110.70848 * 82.72282 * 14 13 12 16 16 C 1.50695 * 110.85427 * 205.89334 * 14 13 12 17 17 H 1.08008 * 119.99928 * 113.68792 * 16 14 13 18 18 C 1.37869 * 120.00231 * 293.68328 * 16 14 13 19 19 N 1.31516 * 120.00144 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00305 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47087 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47155 * 119.99706 * 20 18 16 23 23 H 1.48501 * 109.46873 * 239.99811 * 20 18 16 24 24 C 1.47442 * 111.00096 * 300.94700 * 11 9 8 25 25 H 1.09003 * 109.46999 * 59.99935 * 1 2 3 26 26 H 1.08998 * 109.47471 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47077 * 300.00286 * 1 2 3 28 28 H 1.09001 * 109.47077 * 239.99714 * 2 1 3 29 29 H 1.09003 * 109.46999 * 120.00065 * 2 1 3 30 30 H 1.09001 * 109.47322 * 299.99511 * 5 3 2 31 31 H 1.08996 * 109.47760 * 59.99851 * 5 3 2 32 32 H 1.09007 * 109.46717 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47098 * 299.99320 * 6 5 3 34 34 H 1.08990 * 109.47186 * 59.99698 * 7 6 5 35 35 H 1.08998 * 109.46671 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47102 * 300.00172 * 8 7 6 37 37 H 1.09008 * 109.46531 * 180.02562 * 8 7 6 38 38 H 1.08998 * 110.37544 * 332.46950 * 12 11 9 39 39 H 1.09001 * 110.37267 * 94.80761 * 12 11 9 40 40 H 1.09007 * 110.98703 * 155.16505 * 13 12 11 41 41 H 1.08997 * 110.99187 * 278.97770 * 13 12 11 42 42 H 0.96994 * 120.00490 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.89088 * 242.66312 * 24 11 9 44 44 H 1.09001 * 109.88991 * 3.85075 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5958 1.9850 0.8344 5 6 1.6505 2.1211 -1.3147 6 6 2.1611 3.5634 -1.3150 7 6 3.6844 3.5652 -1.1720 8 6 4.0739 2.8866 0.1429 9 6 3.5633 1.4443 0.1431 10 1 4.0073 0.9015 -0.6915 11 7 3.9378 0.7925 1.4052 12 6 3.3178 1.4773 2.5595 13 6 4.3546 1.3433 3.7026 14 6 5.6924 1.4958 2.9319 15 1 5.9289 2.5481 2.7749 16 6 6.8139 0.8026 3.6615 17 1 7.2902 -0.0621 3.2232 18 6 7.2322 1.2720 4.8885 19 7 6.6526 2.3252 5.4220 20 14 8.6229 0.4131 5.7927 21 1 9.1025 -0.7370 4.9851 22 1 9.7395 1.3688 6.0057 23 1 8.1320 -0.0754 7.1063 24 6 5.4009 0.7957 1.5878 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0948 1.5787 -2.1493 31 1 0.5653 2.1195 -1.4169 32 1 1.8839 4.0468 -2.2519 33 1 1.7171 4.1062 -0.4805 34 1 4.1283 3.0225 -2.0064 35 1 4.0480 4.5928 -1.1717 36 1 3.6299 3.4293 0.9773 37 1 5.1591 2.8883 0.2450 38 1 3.1420 2.5278 2.3279 39 1 2.3840 0.9872 2.8348 40 1 4.2330 2.1410 4.4355 41 1 4.2873 0.3648 4.1781 42 1 6.9471 2.6558 6.2850 43 1 5.7735 -0.2282 1.6146 44 1 5.8750 1.3440 0.7737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397638427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = -28.629129 kcal Electronic energy + Delta-G solvation = -19896.930616 eV Core-core repulsion = 17233.500771 eV Total energy + Delta-G solvation = -2663.429845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.77585 -36.74456 -33.75720 -33.00484 -30.82729 -29.07785 -28.18786 -27.39347 -24.33177 -23.61900 -22.03640 -20.60221 -20.43573 -19.31309 -18.60807 -16.40526 -15.90045 -14.69907 -14.53211 -14.39284 -14.22245 -13.97471 -13.40834 -13.18213 -13.13008 -12.59786 -12.43699 -11.90946 -11.78126 -11.47730 -11.28175 -11.24398 -11.03012 -10.85235 -10.82049 -10.67867 -10.58447 -10.50023 -10.21829 -10.12320 -9.93445 -9.64931 -9.50384 -9.20515 -8.79656 -8.36479 -7.41456 -6.00185 -4.02247 3.30860 3.38983 3.43258 4.45249 4.65844 4.78640 4.90413 5.14668 5.21741 5.32084 5.33803 5.42584 5.52338 5.61596 5.65012 5.71643 5.78712 5.83832 5.89955 5.96700 6.08691 6.14288 6.16579 6.19993 6.24632 6.29779 6.33581 6.37358 6.39788 6.46271 6.57244 6.68339 6.76032 6.80529 6.95445 7.22001 7.26120 7.65278 7.68501 7.93007 7.96381 8.05261 8.45903 9.00161 9.61729 11.09958 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032980 B = 0.005485 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.795900 B = 5103.611618 C = 5492.951990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.077 4.077 4 H 0.068 0.932 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.156 4.156 9 C 0.088 3.912 10 H 0.071 0.929 11 N -0.523 5.523 12 C 0.034 3.966 13 C -0.105 4.105 14 C 0.037 3.963 15 H 0.029 0.971 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.045 3.955 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.258 0.742 43 H 0.065 0.935 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.311 0.470 -11.880 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.086 0.914 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.195 4.195 9 C -0.021 4.021 10 H 0.089 0.911 11 N -0.246 5.246 12 C -0.093 4.093 13 C -0.144 4.144 14 C 0.018 3.982 15 H 0.047 0.953 16 C -0.547 4.547 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.082 4.082 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.478 0.045 -11.749 15.743 hybrid contribution 1.087 0.531 0.639 1.368 sum -9.391 0.576 -11.111 14.559 Atomic orbital electron populations 1.21836 0.96942 1.00931 1.01220 1.21467 0.94356 0.96389 1.02830 1.21176 0.94948 0.96211 0.97218 0.91360 1.21626 1.00224 0.95487 0.97793 1.21543 0.96084 0.96938 1.01092 1.21467 0.95619 1.00147 0.97949 1.22290 1.01795 0.97843 0.97536 1.21788 0.94542 0.92091 0.93714 0.91058 1.63818 1.09396 1.50448 1.00929 1.23151 0.98232 0.95818 0.92118 1.22618 0.94814 1.01008 0.95936 1.19784 0.93243 0.95632 0.89581 0.95332 1.21139 1.16967 1.13245 1.03333 0.92504 1.24973 0.96568 0.94921 0.97474 1.69970 1.41697 1.23634 1.17679 0.86576 0.82255 0.79654 0.79765 1.19752 1.21138 1.21078 1.23005 0.85730 1.00628 0.98861 0.93206 0.93314 0.93093 0.92777 0.90228 0.92267 0.92066 0.92582 0.92256 0.92357 0.92537 0.91536 0.91314 0.94447 0.92440 0.91561 0.92710 0.93180 0.91622 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.68 37.16 0.36 -1.30 16 2 C -0.11 -1.45 5.32 -26.73 -0.14 -1.59 16 3 C -0.08 -1.02 1.43 -90.62 -0.13 -1.15 16 4 H 0.07 0.98 6.98 -51.93 -0.36 0.62 16 5 C -0.11 -1.28 4.97 -26.73 -0.13 -1.41 16 6 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 7 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 8 C -0.16 -2.40 4.65 -26.73 -0.12 -2.52 16 9 C 0.09 1.36 1.61 -67.71 -0.11 1.25 16 10 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 11 N -0.52 -9.71 4.35 -223.29 -0.97 -10.68 16 12 C 0.03 0.66 5.14 -2.30 -0.01 0.65 16 13 C -0.11 -2.46 5.95 -24.60 -0.15 -2.61 16 14 C 0.04 0.92 2.77 -89.95 -0.25 0.67 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 16 C -0.51 -14.00 8.48 -34.45 -0.29 -14.29 16 17 H 0.06 1.56 7.53 -52.48 -0.40 1.16 16 18 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 19 N -0.89 -25.73 12.49 55.43 0.69 -25.04 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.04 0.95 5.90 -2.83 -0.02 0.93 16 25 H 0.05 0.49 6.59 -51.93 -0.34 0.15 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.19 7.43 -51.93 -0.39 0.80 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.63 6.59 -51.93 -0.34 0.29 16 32 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.11 6.08 -51.93 -0.32 0.79 16 37 H 0.07 1.18 6.28 -51.92 -0.33 0.85 16 38 H 0.04 0.71 5.40 -51.93 -0.28 0.43 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.67 7.76 -51.93 -0.40 1.26 16 41 H 0.05 1.35 8.05 -51.93 -0.42 0.93 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.07 1.46 7.63 -51.93 -0.40 1.06 16 44 H 0.04 0.73 5.94 -51.93 -0.31 0.42 16 LS Contribution 320.93 15.07 4.84 4.84 Total: -1.00 -27.47 320.93 -9.93 -37.41 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.06 Total: -0.12 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.41 Total: -22.80 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.28 Total: -35.72 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.47 -9.93 -37.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397638427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.777 kcal (2) G-P(sol) polarization free energy of solvation -27.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds