Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47357 * 2 1 4 4 H 1.08996 * 109.47346 * 54.29345 * 3 2 1 5 5 C 1.52999 * 109.46904 * 294.29784 * 3 2 1 6 6 C 1.53006 * 109.46758 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47465 * 60.00095 * 6 5 3 8 8 C 1.53007 * 109.46477 * 299.99660 * 7 6 5 9 9 C 1.52997 * 109.47140 * 60.00446 * 8 7 6 10 10 H 1.09004 * 109.47243 * 59.99561 * 9 8 7 11 11 N 1.46903 * 109.47114 * 179.97438 * 9 8 7 12 12 C 1.47844 * 110.99868 * 61.78829 * 11 9 8 13 13 C 1.54904 * 104.79555 * 213.63567 * 12 11 9 14 14 C 1.55139 * 101.65488 * 37.07408 * 13 12 11 15 15 H 1.08993 * 110.70848 * 82.72282 * 14 13 12 16 16 C 1.50695 * 110.85427 * 205.89334 * 14 13 12 17 17 H 1.08008 * 119.99928 * 113.68792 * 16 14 13 18 18 C 1.37869 * 120.00231 * 293.68328 * 16 14 13 19 19 N 1.31516 * 120.00144 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00305 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47087 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47155 * 119.99706 * 20 18 16 23 23 H 1.48501 * 109.46873 * 239.99811 * 20 18 16 24 24 C 1.47442 * 111.00096 * 300.94700 * 11 9 8 25 25 H 1.09003 * 109.46999 * 59.99935 * 1 2 3 26 26 H 1.08998 * 109.47471 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47077 * 300.00286 * 1 2 3 28 28 H 1.09001 * 109.47077 * 239.99714 * 2 1 3 29 29 H 1.09003 * 109.46999 * 120.00065 * 2 1 3 30 30 H 1.09001 * 109.47322 * 299.99511 * 5 3 2 31 31 H 1.08996 * 109.47760 * 59.99851 * 5 3 2 32 32 H 1.09007 * 109.46717 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47098 * 299.99320 * 6 5 3 34 34 H 1.08990 * 109.47186 * 59.99698 * 7 6 5 35 35 H 1.08998 * 109.46671 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47102 * 300.00172 * 8 7 6 37 37 H 1.09008 * 109.46531 * 180.02562 * 8 7 6 38 38 H 1.08998 * 110.37544 * 332.46950 * 12 11 9 39 39 H 1.09001 * 110.37267 * 94.80761 * 12 11 9 40 40 H 1.09007 * 110.98703 * 155.16505 * 13 12 11 41 41 H 1.08997 * 110.99187 * 278.97770 * 13 12 11 42 42 H 0.96994 * 120.00490 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.89088 * 242.66312 * 24 11 9 44 44 H 1.09001 * 109.88991 * 3.85075 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5958 1.9850 0.8344 5 6 1.6505 2.1211 -1.3147 6 6 2.1611 3.5634 -1.3150 7 6 3.6844 3.5652 -1.1720 8 6 4.0739 2.8866 0.1429 9 6 3.5633 1.4443 0.1431 10 1 4.0073 0.9015 -0.6915 11 7 3.9378 0.7925 1.4052 12 6 3.3178 1.4773 2.5595 13 6 4.3546 1.3433 3.7026 14 6 5.6924 1.4958 2.9319 15 1 5.9289 2.5481 2.7749 16 6 6.8139 0.8026 3.6615 17 1 7.2902 -0.0621 3.2232 18 6 7.2322 1.2720 4.8885 19 7 6.6526 2.3252 5.4220 20 14 8.6229 0.4131 5.7927 21 1 9.1025 -0.7370 4.9851 22 1 9.7395 1.3688 6.0057 23 1 8.1320 -0.0754 7.1063 24 6 5.4009 0.7957 1.5878 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0948 1.5787 -2.1493 31 1 0.5653 2.1195 -1.4169 32 1 1.8839 4.0468 -2.2519 33 1 1.7171 4.1062 -0.4805 34 1 4.1283 3.0225 -2.0064 35 1 4.0480 4.5928 -1.1717 36 1 3.6299 3.4293 0.9773 37 1 5.1591 2.8883 0.2450 38 1 3.1420 2.5278 2.3279 39 1 2.3840 0.9872 2.8348 40 1 4.2330 2.1410 4.4355 41 1 4.2873 0.3648 4.1781 42 1 6.9471 2.6558 6.2850 43 1 5.7735 -0.2282 1.6146 44 1 5.8750 1.3440 0.7737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397638427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = -42.643930 kcal Electronic energy + Delta-G solvation = -19897.538344 eV Core-core repulsion = 17233.500771 eV Total energy + Delta-G solvation = -2664.037573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11837 -38.21130 -34.94851 -34.76095 -32.47336 -30.28317 -29.84452 -28.82019 -26.27270 -24.64053 -23.44881 -21.99458 -21.53437 -21.04030 -19.94403 -18.51362 -17.30259 -16.52328 -15.90711 -15.66585 -15.60251 -15.10967 -14.64741 -14.54139 -14.48198 -13.98933 -13.72520 -13.42081 -13.33170 -13.00084 -12.90378 -12.65768 -12.51005 -12.29243 -12.25808 -12.08340 -11.94495 -11.85523 -11.59371 -11.44268 -11.25238 -11.17752 -10.97826 -10.85319 -10.71874 -10.49769 -8.97380 -8.15151 -6.24574 1.38844 1.40645 1.52469 2.41921 3.16209 3.22514 3.69516 3.86522 4.01925 4.17934 4.20672 4.29418 4.39771 4.43677 4.47768 4.50449 4.59337 4.64293 4.65258 4.67813 4.84791 4.87936 4.93541 5.00535 5.01628 5.13139 5.19458 5.22041 5.25744 5.30265 5.30767 5.35619 5.38665 5.47190 5.48891 5.58353 5.65455 5.72223 5.74894 5.88586 6.22675 6.34882 6.44485 6.84901 7.43019 8.94673 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032980 B = 0.005485 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.795900 B = 5103.611618 C = 5492.951990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.072 4.072 4 H 0.058 0.942 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.109 4.109 8 C -0.152 4.152 9 C 0.087 3.913 10 H 0.075 0.925 11 N -0.521 5.521 12 C 0.051 3.949 13 C -0.099 4.099 14 C 0.032 3.968 15 H -0.004 1.004 16 C -0.528 4.528 17 H 0.054 0.946 18 C 0.013 3.987 19 N -0.921 5.921 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.058 3.942 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.260 0.740 43 H 0.056 0.944 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 0.057 -13.557 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.090 4.090 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.191 4.191 9 C -0.022 4.022 10 H 0.094 0.906 11 N -0.244 5.244 12 C -0.076 4.076 13 C -0.137 4.137 14 C 0.013 3.987 15 H 0.014 0.986 16 C -0.567 4.567 17 H 0.072 0.928 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.781 3.219 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.069 4.069 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.594 -0.370 -13.442 17.755 hybrid contribution 1.447 0.682 1.152 1.971 sum -10.148 0.311 -12.290 15.941 Atomic orbital electron populations 1.21791 0.95195 1.01644 1.01818 1.21417 0.95874 0.95644 1.01878 1.21141 0.92662 0.96839 0.98389 0.92379 1.21603 1.01407 0.95168 0.96391 1.21539 0.94593 0.97138 1.02107 1.21448 0.97040 1.00106 0.96157 1.22216 0.99995 0.97978 0.98915 1.21924 0.96562 0.91787 0.91901 0.90637 1.63812 1.07408 1.51097 1.02063 1.22975 0.97471 0.96509 0.90675 1.22409 0.95759 0.98990 0.96588 1.19718 0.93430 0.93847 0.91745 0.98552 1.21484 1.17877 1.13372 1.03937 0.92811 1.25762 0.98981 0.95570 0.98291 1.70091 1.43048 1.24878 1.18045 0.85545 0.79211 0.78716 0.78444 1.19027 1.20598 1.20615 1.22737 0.87704 0.99461 0.97038 0.91636 0.92627 0.93427 0.92246 0.92690 0.91440 0.90271 0.90315 0.92725 0.91417 0.92095 0.93201 0.93792 0.93965 0.90715 0.94008 0.94329 0.93079 0.92587 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.68 71.98 0.70 -2.10 16 2 C -0.11 -2.61 5.32 30.59 0.16 -2.44 16 3 C -0.07 -1.75 1.43 -10.80 -0.02 -1.77 16 4 H 0.06 1.56 6.98 -2.39 -0.02 1.54 16 5 C -0.11 -2.05 4.97 30.60 0.15 -1.90 16 6 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 7 C -0.11 -2.52 5.92 30.60 0.18 -2.33 16 8 C -0.15 -4.63 4.65 30.60 0.14 -4.49 16 9 C 0.09 2.60 1.61 44.91 0.07 2.68 16 10 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 11 N -0.52 -19.31 4.35 -860.37 -3.74 -23.05 16 12 C 0.05 1.98 5.14 86.77 0.45 2.43 16 13 C -0.10 -4.80 5.95 31.98 0.19 -4.61 16 14 C 0.03 1.65 2.77 -10.36 -0.03 1.62 16 15 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 16 C -0.53 -29.90 8.48 25.60 0.22 -29.68 16 17 H 0.05 3.00 7.53 -2.91 -0.02 2.98 16 18 C 0.01 0.71 5.36 84.65 0.45 1.17 16 19 N -0.92 -54.64 12.49 21.44 0.27 -54.37 16 20 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 C 0.06 2.52 5.90 86.65 0.51 3.03 16 25 H 0.06 1.05 6.59 -2.39 -0.02 1.03 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.57 7.43 -2.39 -0.02 1.55 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.28 6.59 -2.39 -0.02 1.26 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.67 6.08 -2.39 -0.01 1.65 16 37 H 0.04 1.53 6.28 -2.38 -0.01 1.52 16 38 H 0.04 1.61 5.40 -2.39 -0.01 1.60 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.04 2.19 7.76 -2.38 -0.02 2.17 16 41 H 0.04 1.96 8.05 -2.39 -0.02 1.94 16 42 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.06 2.52 7.63 -2.39 -0.02 2.50 16 44 H 0.04 1.79 5.94 -2.39 -0.01 1.77 16 Total: -1.00 -60.19 320.93 2.85 -57.34 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.94 Total: 14.05 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 3.36 Total: -40.46 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -3.48 Total: -77.43 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -60.19 2.85 -57.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397638427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.693 kcal (2) G-P(sol) polarization free energy of solvation -60.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds