Wall clock time and date at job start Mon Mar 30 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 H 1.09004 * 109.46581 * 54.31862 * 3 2 1 5 5 C 1.53002 * 109.47242 * 294.31950 * 3 2 1 6 6 C 1.53000 * 109.46637 * 299.99867 * 5 3 2 7 7 C 1.52996 * 109.47413 * 299.99927 * 6 5 3 8 8 C 1.53002 * 109.47160 * 60.00393 * 7 6 5 9 9 C 1.53001 * 109.47039 * 174.31497 * 3 2 1 10 10 H 1.08999 * 109.46750 * 179.97438 * 9 3 2 11 11 N 1.46894 * 109.47470 * 300.00524 * 9 3 2 12 12 C 1.47910 * 110.99580 * 296.09893 * 11 9 3 13 13 C 1.53993 * 107.05387 * 214.15631 * 12 11 9 14 14 C 1.54594 * 105.14630 * 1.22571 * 13 12 11 15 15 H 1.09006 * 110.72141 * 263.42578 * 14 13 12 16 16 C 1.50687 * 110.72615 * 140.31485 * 14 13 12 17 17 H 1.08003 * 119.99961 * 241.45744 * 16 14 13 18 18 C 1.37877 * 120.00228 * 61.45782 * 16 14 13 19 19 N 1.31516 * 119.99886 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00358 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47351 * 89.99417 * 20 18 16 22 22 H 1.48500 * 109.47263 * 210.00000 * 20 18 16 23 23 H 1.48505 * 109.46697 * 329.99649 * 20 18 16 24 24 C 1.48534 * 111.00148 * 178.70470 * 11 9 3 25 25 H 1.09006 * 109.47204 * 299.99950 * 1 2 3 26 26 H 1.09004 * 109.46965 * 59.99852 * 1 2 3 27 27 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46863 * 240.00127 * 2 1 3 29 29 H 1.09004 * 109.46965 * 120.00148 * 2 1 3 30 30 H 1.08999 * 109.46872 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47089 * 59.99705 * 5 3 2 32 32 H 1.08999 * 109.47150 * 60.00585 * 6 5 3 33 33 H 1.09009 * 109.46462 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.47093 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.46796 * 300.00193 * 7 6 5 36 36 H 1.09000 * 109.47089 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.46872 * 59.99666 * 8 7 6 38 38 H 1.08994 * 109.92024 * 333.50879 * 12 11 9 39 39 H 1.09002 * 109.91772 * 94.80719 * 12 11 9 40 40 H 1.09001 * 110.30676 * 120.14660 * 13 12 11 41 41 H 1.09006 * 110.30422 * 242.30643 * 13 12 11 42 42 H 0.96999 * 120.00389 * 179.97438 * 19 18 16 43 43 H 1.08999 * 110.66486 * 278.14953 * 24 11 9 44 44 H 1.08999 * 110.66527 * 41.28827 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 1.6500 2.1214 -1.3145 6 6 2.2733 1.3601 -2.4861 7 6 3.7966 1.3624 -2.3433 8 6 4.1866 0.6835 -1.0288 9 6 3.5634 1.4448 0.1429 10 1 3.9267 2.4725 0.1424 11 7 3.9379 0.7930 1.4049 12 6 3.4300 1.5553 2.5662 13 6 4.4686 1.4064 3.6934 14 6 5.6007 0.5449 3.0883 15 1 5.4739 -0.5035 3.3583 16 6 6.9496 1.0486 3.5324 17 1 7.6610 1.4038 2.8014 18 6 7.2759 1.0561 4.8720 19 7 6.4096 0.6241 5.7622 20 14 8.9479 1.6812 5.4227 21 1 8.8680 3.1399 5.6887 22 1 9.3571 0.9736 6.6625 23 1 9.9478 1.4268 4.3546 24 6 5.4140 0.7489 1.5637 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0138 3.1489 -1.3146 31 1 0.5648 2.1197 -1.4162 32 1 1.9099 0.3324 -2.4862 33 1 1.9950 1.8435 -3.4227 34 1 4.2406 0.8204 -3.1783 35 1 4.1599 2.3900 -2.3434 36 1 5.2719 0.6855 -0.9269 37 1 3.8232 -0.3441 -1.0289 38 1 3.3185 2.6064 2.3004 39 1 2.4718 1.1473 2.8880 40 1 4.8521 2.3839 3.9859 41 1 4.0257 0.9007 4.5515 42 1 6.6391 0.6290 6.7046 43 1 5.8357 -0.0893 1.0090 44 1 5.8636 1.6888 1.2435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397638429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:24 Heat of formation + Delta-G solvation = -28.854500 kcal Electronic energy + Delta-G solvation = -19813.364713 eV Core-core repulsion = 17149.925095 eV Total energy + Delta-G solvation = -2663.439618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73588 -37.00461 -33.14763 -33.06686 -30.97954 -29.40274 -28.06870 -27.41908 -24.39413 -23.47388 -21.98895 -21.61118 -19.87509 -19.19623 -18.03342 -16.43217 -15.75905 -15.16109 -14.77605 -14.44887 -14.39888 -13.79315 -13.30262 -13.14972 -13.03765 -12.56103 -12.20304 -12.07168 -11.92882 -11.63653 -11.39069 -11.16044 -11.02874 -10.96282 -10.91929 -10.76267 -10.61246 -10.38682 -10.23375 -10.00613 -9.72415 -9.63313 -9.53407 -9.13427 -8.72338 -8.36590 -7.62606 -5.99257 -4.02416 3.31259 3.38172 3.41267 4.43031 4.59180 4.80766 4.85036 5.11467 5.27380 5.33042 5.34909 5.43120 5.46201 5.60678 5.64497 5.73460 5.78369 5.82782 5.88881 5.92794 6.07720 6.10679 6.13537 6.19320 6.22552 6.27055 6.29349 6.34810 6.42295 6.56521 6.57330 6.62592 6.68244 6.79995 6.93405 7.21300 7.24072 7.67045 7.72483 7.84304 7.95020 8.08207 8.48851 9.00230 9.61624 11.10489 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036155 B = 0.005267 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.257858 B = 5315.036767 C = 5782.892745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.065 0.935 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.113 4.113 9 C 0.083 3.917 10 H 0.032 0.968 11 N -0.514 5.514 12 C 0.037 3.963 13 C -0.101 4.101 14 C 0.053 3.947 15 H 0.035 0.965 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.044 3.956 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.259 0.741 43 H 0.061 0.939 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 1.356 -13.425 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.084 0.916 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.151 4.151 9 C -0.026 4.026 10 H 0.050 0.950 11 N -0.238 5.238 12 C -0.091 4.091 13 C -0.140 4.140 14 C 0.034 3.966 15 H 0.053 0.947 16 C -0.554 4.554 17 H 0.073 0.927 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.083 4.083 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.976 0.803 -13.241 16.598 hybrid contribution 1.225 1.334 0.453 1.867 sum -8.750 2.137 -12.788 15.642 Atomic orbital electron populations 1.21843 0.97070 1.00911 1.01138 1.21549 0.94201 0.96368 1.03061 1.21119 0.94880 0.96771 0.96754 0.91645 1.21589 0.99972 0.98900 0.94817 1.21564 0.95678 1.00843 0.97581 1.21515 0.95763 1.00674 0.97540 1.21603 1.00384 1.00037 0.93053 1.21738 0.94468 0.95456 0.90928 0.95001 1.64753 1.11204 1.47479 1.00348 1.22921 0.99247 0.94406 0.92541 1.22306 0.95279 1.00774 0.95658 1.19521 0.93520 0.96105 0.87497 0.94701 1.21106 0.99746 1.42485 0.92066 0.92741 1.24959 0.96778 0.95246 0.96839 1.69980 1.34656 1.46630 1.01327 0.86647 0.84651 0.78831 0.78174 1.20800 1.21243 1.19934 1.23324 0.85851 0.98656 1.00512 0.93169 0.93248 0.93326 0.92043 0.90286 0.92559 0.92008 0.91608 0.92735 0.92295 0.92454 0.91963 0.91062 0.95714 0.92252 0.92971 0.92250 0.93090 0.92048 0.95060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.68 37.16 0.36 -1.33 16 2 C -0.11 -1.48 4.61 -26.73 -0.12 -1.61 16 3 C -0.08 -1.03 2.01 -90.62 -0.18 -1.21 16 4 H 0.07 0.94 7.29 -51.93 -0.38 0.56 16 5 C -0.11 -1.30 5.22 -26.73 -0.14 -1.43 16 6 C -0.12 -1.25 5.65 -26.73 -0.15 -1.40 16 7 C -0.12 -1.35 5.92 -26.73 -0.16 -1.50 16 8 C -0.11 -1.59 4.76 -26.73 -0.13 -1.71 16 9 C 0.08 1.30 1.33 -67.71 -0.09 1.21 16 10 H 0.03 0.54 7.98 -51.93 -0.41 0.13 16 11 N -0.51 -9.65 4.25 -222.49 -0.94 -10.60 16 12 C 0.04 0.72 5.50 -2.75 -0.02 0.71 16 13 C -0.10 -2.42 5.50 -25.38 -0.14 -2.56 16 14 C 0.05 1.33 2.99 -89.92 -0.27 1.06 16 15 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.52 -14.24 8.42 -34.45 -0.29 -14.53 16 17 H 0.05 1.49 7.78 -52.48 -0.41 1.08 16 18 C 0.06 1.77 5.33 -17.82 -0.10 1.68 16 19 N -0.89 -25.67 12.44 55.43 0.69 -24.98 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.04 0.93 4.77 -1.89 -0.01 0.92 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.49 6.59 -51.93 -0.34 0.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.77 4.83 -51.93 -0.25 0.52 16 29 H 0.08 1.21 7.43 -51.93 -0.39 0.83 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.63 6.59 -51.93 -0.34 0.29 16 32 H 0.07 0.69 6.31 -51.93 -0.33 0.36 16 33 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.94 6.91 -51.93 -0.36 0.58 16 37 H 0.07 1.01 6.56 -51.93 -0.34 0.67 16 38 H 0.02 0.47 7.64 -51.93 -0.40 0.07 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.05 1.32 7.84 -51.93 -0.41 0.91 16 41 H 0.06 1.49 8.05 -51.93 -0.42 1.08 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 44 H 0.03 0.68 7.91 -51.93 -0.41 0.27 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -27.61 320.05 -9.98 -37.59 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.10 Total: -1.50 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.43 Total: -21.70 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.26 Total: -35.58 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.61 -9.98 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397638429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.739 kcal (2) G-P(sol) polarization free energy of solvation -27.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds