Wall clock time and date at job start Mon Mar 30 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 H 1.09004 * 109.46581 * 54.31862 * 3 2 1 5 5 C 1.53002 * 109.47242 * 294.31950 * 3 2 1 6 6 C 1.53000 * 109.46637 * 299.99867 * 5 3 2 7 7 C 1.52996 * 109.47413 * 299.99927 * 6 5 3 8 8 C 1.53002 * 109.47160 * 60.00393 * 7 6 5 9 9 C 1.53001 * 109.47039 * 174.31497 * 3 2 1 10 10 H 1.08999 * 109.46750 * 179.97438 * 9 3 2 11 11 N 1.46894 * 109.47470 * 300.00524 * 9 3 2 12 12 C 1.47910 * 110.99580 * 296.09893 * 11 9 3 13 13 C 1.53993 * 107.05387 * 214.15631 * 12 11 9 14 14 C 1.54594 * 105.14630 * 1.22571 * 13 12 11 15 15 H 1.09006 * 110.72141 * 263.42578 * 14 13 12 16 16 C 1.50687 * 110.72615 * 140.31485 * 14 13 12 17 17 H 1.08003 * 119.99961 * 241.45744 * 16 14 13 18 18 C 1.37877 * 120.00228 * 61.45782 * 16 14 13 19 19 N 1.31516 * 119.99886 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00358 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47351 * 89.99417 * 20 18 16 22 22 H 1.48500 * 109.47263 * 210.00000 * 20 18 16 23 23 H 1.48505 * 109.46697 * 329.99649 * 20 18 16 24 24 C 1.48534 * 111.00148 * 178.70470 * 11 9 3 25 25 H 1.09006 * 109.47204 * 299.99950 * 1 2 3 26 26 H 1.09004 * 109.46965 * 59.99852 * 1 2 3 27 27 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46863 * 240.00127 * 2 1 3 29 29 H 1.09004 * 109.46965 * 120.00148 * 2 1 3 30 30 H 1.08999 * 109.46872 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47089 * 59.99705 * 5 3 2 32 32 H 1.08999 * 109.47150 * 60.00585 * 6 5 3 33 33 H 1.09009 * 109.46462 * 179.97438 * 6 5 3 34 34 H 1.08996 * 109.47093 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.46796 * 300.00193 * 7 6 5 36 36 H 1.09000 * 109.47089 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.46872 * 59.99666 * 8 7 6 38 38 H 1.08994 * 109.92024 * 333.50879 * 12 11 9 39 39 H 1.09002 * 109.91772 * 94.80719 * 12 11 9 40 40 H 1.09001 * 110.30676 * 120.14660 * 13 12 11 41 41 H 1.09006 * 110.30422 * 242.30643 * 13 12 11 42 42 H 0.96999 * 120.00389 * 179.97438 * 19 18 16 43 43 H 1.08999 * 110.66486 * 278.14953 * 24 11 9 44 44 H 1.08999 * 110.66527 * 41.28827 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 1.6500 2.1214 -1.3145 6 6 2.2733 1.3601 -2.4861 7 6 3.7966 1.3624 -2.3433 8 6 4.1866 0.6835 -1.0288 9 6 3.5634 1.4448 0.1429 10 1 3.9267 2.4725 0.1424 11 7 3.9379 0.7930 1.4049 12 6 3.4300 1.5553 2.5662 13 6 4.4686 1.4064 3.6934 14 6 5.6007 0.5449 3.0883 15 1 5.4739 -0.5035 3.3583 16 6 6.9496 1.0486 3.5324 17 1 7.6610 1.4038 2.8014 18 6 7.2759 1.0561 4.8720 19 7 6.4096 0.6241 5.7622 20 14 8.9479 1.6812 5.4227 21 1 8.8680 3.1399 5.6887 22 1 9.3571 0.9736 6.6625 23 1 9.9478 1.4268 4.3546 24 6 5.4140 0.7489 1.5637 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0138 3.1489 -1.3146 31 1 0.5648 2.1197 -1.4162 32 1 1.9099 0.3324 -2.4862 33 1 1.9950 1.8435 -3.4227 34 1 4.2406 0.8204 -3.1783 35 1 4.1599 2.3900 -2.3434 36 1 5.2719 0.6855 -0.9269 37 1 3.8232 -0.3441 -1.0289 38 1 3.3185 2.6064 2.3004 39 1 2.4718 1.1473 2.8880 40 1 4.8521 2.3839 3.9859 41 1 4.0257 0.9007 4.5515 42 1 6.6391 0.6290 6.7046 43 1 5.8357 -0.0893 1.0090 44 1 5.8636 1.6888 1.2435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397638429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:24 Heat of formation + Delta-G solvation = -42.997317 kcal Electronic energy + Delta-G solvation = -19813.977991 eV Core-core repulsion = 17149.925095 eV Total energy + Delta-G solvation = -2664.052897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99301 -38.54079 -35.00752 -34.13040 -32.59294 -30.61230 -29.68689 -28.88458 -26.33932 -24.48533 -23.24920 -22.80525 -21.38373 -21.07280 -19.14186 -18.35251 -17.16997 -16.65316 -16.41878 -15.89833 -15.69074 -15.08591 -14.65317 -14.52751 -14.15304 -13.91447 -13.72227 -13.38577 -13.32256 -13.06366 -12.95352 -12.64774 -12.54016 -12.35703 -12.29008 -12.13978 -12.02670 -11.91217 -11.58771 -11.40498 -11.15543 -11.02513 -10.84094 -10.75348 -10.67373 -10.50779 -9.20029 -8.14469 -6.25284 1.39982 1.40498 1.51163 2.41431 3.14119 3.19175 3.74780 3.83982 4.05898 4.16026 4.27014 4.30208 4.35889 4.43481 4.46309 4.52885 4.61014 4.63115 4.64945 4.78464 4.83990 4.85202 4.91939 4.94629 5.02695 5.14448 5.19247 5.23221 5.25559 5.27358 5.30807 5.35382 5.35890 5.49006 5.54504 5.59320 5.62400 5.77366 5.81292 5.88135 6.05617 6.36247 6.42868 6.84783 7.42662 8.94994 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.036155 B = 0.005267 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.257858 B = 5315.036767 C = 5782.892745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.073 4.073 4 H 0.055 0.945 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.110 4.110 9 C 0.081 3.919 10 H 0.021 0.979 11 N -0.513 5.513 12 C 0.050 3.950 13 C -0.092 4.092 14 C 0.043 3.957 15 H 0.001 0.999 16 C -0.535 4.535 17 H 0.053 0.947 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.956 3.044 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.267 1.267 24 C 0.060 3.940 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.261 0.739 43 H 0.066 0.934 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 2.001 -15.449 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.092 4.092 4 H 0.074 0.926 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.028 4.028 10 H 0.039 0.961 11 N -0.237 5.237 12 C -0.078 4.078 13 C -0.131 4.131 14 C 0.024 3.976 15 H 0.019 0.981 16 C -0.573 4.573 17 H 0.071 0.929 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.191 1.191 24 C -0.067 4.067 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.687 1.451 -15.284 18.706 hybrid contribution 1.439 1.103 1.093 2.117 sum -9.248 2.554 -14.191 17.129 Atomic orbital electron populations 1.21799 0.95342 1.01597 1.01749 1.21481 0.95687 0.95652 1.01966 1.21099 0.92727 0.97338 0.98015 0.92642 1.21574 1.01103 0.98630 0.93552 1.21561 0.94484 1.01190 0.98080 1.21497 0.96909 1.00435 0.96229 1.21580 0.99305 1.00052 0.93869 1.21890 0.96490 0.94695 0.89697 0.96103 1.64774 1.09235 1.48067 1.01575 1.22758 0.98310 0.95323 0.91440 1.22086 0.95872 0.98794 0.96343 1.19481 0.93441 0.94142 0.90535 0.98102 1.21439 1.00760 1.42650 0.92494 0.92866 1.25764 1.00498 0.95353 0.96897 1.70108 1.36523 1.47501 1.01571 0.85596 0.80168 0.78348 0.77797 1.20141 1.20804 1.19134 1.23036 0.87711 0.98460 0.97537 0.93583 0.91569 0.92679 0.91390 0.93143 0.92592 0.90313 0.91225 0.90663 0.90790 0.92549 0.93439 0.91214 0.94657 0.90920 0.95130 0.94493 0.93020 0.91546 0.95635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.68 71.98 0.70 -2.21 16 2 C -0.11 -2.68 4.61 30.60 0.14 -2.54 16 3 C -0.07 -1.83 2.01 -10.79 -0.02 -1.85 16 4 H 0.06 1.50 7.29 -2.38 -0.02 1.49 16 5 C -0.11 -2.15 5.22 30.59 0.16 -1.99 16 6 C -0.12 -2.02 5.65 30.59 0.17 -1.84 16 7 C -0.11 -2.30 5.92 30.59 0.18 -2.11 16 8 C -0.11 -2.95 4.76 30.60 0.15 -2.81 16 9 C 0.08 2.46 1.33 44.92 0.06 2.52 16 10 H 0.02 0.69 7.98 -2.39 -0.02 0.67 16 11 N -0.51 -19.33 4.25 -857.84 -3.64 -22.97 16 12 C 0.05 1.97 5.50 86.44 0.48 2.44 16 13 C -0.09 -4.56 5.50 31.47 0.17 -4.38 16 14 C 0.04 2.27 2.99 -10.34 -0.03 2.24 16 15 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 16 C -0.54 -30.31 8.42 25.60 0.22 -30.10 16 17 H 0.05 2.95 7.78 -2.91 -0.02 2.93 16 18 C 0.01 0.79 5.33 84.65 0.45 1.24 16 19 N -0.92 -54.54 12.44 21.45 0.27 -54.27 16 20 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 C 0.06 2.61 4.77 86.65 0.41 3.02 16 25 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.07 1.09 6.59 -2.38 -0.02 1.07 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.55 4.83 -2.39 -0.01 1.54 16 29 H 0.05 1.51 7.43 -2.38 -0.02 1.50 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.30 6.59 -2.39 -0.02 1.29 16 32 H 0.07 1.19 6.31 -2.39 -0.02 1.18 16 33 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.39 6.91 -2.39 -0.02 1.38 16 37 H 0.07 1.89 6.56 -2.39 -0.02 1.87 16 38 H 0.04 1.32 7.64 -2.39 -0.02 1.31 16 39 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.03 1.60 7.84 -2.39 -0.02 1.58 16 41 H 0.04 1.94 8.05 -2.38 -0.02 1.92 16 42 H 0.26 14.71 8.31 -92.71 -0.77 13.93 16 43 H 0.07 2.79 7.66 -2.39 -0.02 2.77 16 44 H 0.03 1.13 7.91 -2.39 -0.02 1.11 16 Total: -1.00 -60.50 320.05 2.82 -57.68 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.93 Total: 11.61 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 3.23 Total: -38.37 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.38 Total: -77.24 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -60.50 2.82 -57.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397638429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.685 kcal (2) G-P(sol) polarization free energy of solvation -60.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds