Wall clock time and date at job start Mon Mar 30 2020 07:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46906 * 2 1 4 4 H 1.09000 * 109.46958 * 54.77047 * 3 2 1 5 5 C 1.50701 * 109.47056 * 174.76866 * 3 2 1 6 6 H 1.08003 * 119.99934 * 119.99814 * 5 3 2 7 7 C 1.37878 * 120.00070 * 300.00424 * 5 3 2 8 8 N 1.31522 * 119.99662 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 120.00060 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47051 * 90.00265 * 9 7 5 11 11 H 1.48503 * 109.47290 * 210.00251 * 9 7 5 12 12 H 1.48492 * 109.47481 * 330.00139 * 9 7 5 13 13 N 1.46896 * 109.47251 * 294.77203 * 3 2 1 14 14 C 1.46894 * 111.00078 * 153.85417 * 13 3 2 15 15 C 1.52999 * 109.47154 * 174.70197 * 14 13 3 16 16 H 1.09000 * 109.47011 * 55.00273 * 15 14 13 17 17 C 1.53000 * 109.47522 * 295.00183 * 15 14 13 18 18 C 1.53002 * 109.47284 * 240.00085 * 17 15 14 19 19 C 1.52995 * 109.46715 * 299.99819 * 18 17 15 20 20 C 1.52995 * 109.47582 * 60.00185 * 19 18 17 21 21 C 1.52999 * 109.47037 * 359.97438 * 20 19 18 22 22 C 1.53009 * 109.47016 * 60.00122 * 21 20 19 23 23 C 1.52998 * 109.47021 * 59.99898 * 18 17 15 24 24 H 1.08999 * 109.47230 * 66.09230 * 1 2 3 25 25 H 1.09003 * 109.46799 * 186.09155 * 1 2 3 26 26 H 1.08996 * 109.47427 * 306.08658 * 1 2 3 27 27 H 1.08999 * 109.47232 * 240.00081 * 2 1 3 28 28 H 1.08999 * 109.47381 * 119.99741 * 2 1 3 29 29 H 0.96998 * 119.99600 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99536 * 29.89977 * 13 3 2 31 31 H 1.09001 * 109.47337 * 294.70584 * 14 13 3 32 32 H 1.08999 * 109.47279 * 54.70411 * 14 13 3 33 33 H 1.09005 * 109.46579 * 359.97438 * 17 15 14 34 34 H 1.08997 * 109.47366 * 119.99637 * 17 15 14 35 35 H 1.08996 * 109.46942 * 179.97438 * 18 17 15 36 36 H 1.09003 * 109.47480 * 299.99354 * 19 18 17 37 37 H 1.09007 * 109.46602 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47196 * 239.99733 * 20 19 18 39 39 H 1.08997 * 109.47225 * 119.99407 * 20 19 18 40 40 H 1.08996 * 109.47212 * 179.97438 * 21 20 19 41 41 H 1.08995 * 109.46878 * 60.00240 * 22 21 20 42 42 H 1.08995 * 109.47281 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47540 * 59.99531 * 23 18 17 44 44 H 1.08999 * 109.47012 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6021 1.9827 0.8395 5 6 3.5413 1.4446 0.1295 6 1 4.1496 1.8881 -0.6449 7 6 4.1385 0.8801 1.2367 8 7 5.4489 0.8824 1.3499 9 14 3.0866 0.1135 2.5764 10 1 2.8659 -1.3230 2.2713 11 1 3.7794 0.2411 3.8837 12 1 1.7781 0.8128 2.6394 13 7 1.6560 2.0977 -1.2575 14 6 1.5500 3.5523 -1.0823 15 6 1.2795 4.2107 -2.4366 16 1 0.3950 3.7618 -2.8886 17 6 2.4843 4.0004 -3.3559 18 6 3.0537 5.3590 -3.7694 19 6 1.9797 6.1576 -4.5109 20 6 0.7749 6.3679 -3.5918 21 6 1.0452 5.7091 -2.2376 22 6 2.2869 6.3387 -1.6029 23 6 3.4920 6.1293 -2.5222 24 1 -0.3634 0.4165 -0.9395 25 1 -0.3633 -1.0219 0.1091 26 1 -0.3634 0.6053 0.8304 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8690 0.4856 2.1290 30 1 0.7954 1.7131 -1.6174 31 1 0.7313 3.7773 -0.3989 32 1 2.4830 3.9376 -0.6710 33 1 3.2496 3.4318 -2.8274 34 1 2.1721 3.4516 -4.2443 35 1 3.9123 5.2091 -4.4239 36 1 1.6675 5.6088 -5.3995 37 1 2.3855 7.1253 -4.8059 38 1 -0.1096 5.9190 -4.0437 39 1 0.6082 7.4357 -3.4498 40 1 0.1870 5.8593 -1.5827 41 1 2.1204 7.4064 -1.4607 42 1 2.4798 5.8691 -0.6385 43 1 4.2569 5.5603 -1.9939 44 1 3.8971 7.0973 -2.8168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400045587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:26 Heat of formation + Delta-G solvation = -46.501781 kcal Electronic energy + Delta-G solvation = -19835.068155 eV Core-core repulsion = 17170.863294 eV Total energy + Delta-G solvation = -2664.204862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42143 -38.29677 -34.79232 -33.86239 -32.21552 -31.66413 -31.13521 -28.98784 -25.75692 -24.16088 -23.40106 -22.84169 -21.88551 -21.56463 -18.85615 -17.44176 -17.30193 -17.12937 -16.48610 -16.35477 -15.94929 -15.56035 -14.88411 -14.33482 -14.10741 -13.75271 -13.59550 -13.45578 -13.06261 -12.88523 -12.87408 -12.83106 -12.78919 -12.60629 -12.52176 -12.36747 -12.21190 -11.94119 -11.69095 -11.31640 -11.25114 -11.18522 -10.70947 -10.63259 -10.56320 -10.49592 -8.97770 -8.27276 -6.28202 1.26622 1.32027 1.42137 2.30697 3.05453 3.44559 3.71287 3.78915 3.88973 4.25317 4.26761 4.34872 4.39960 4.43588 4.48108 4.50905 4.53704 4.55795 4.58272 4.62717 4.74027 4.81402 4.82414 4.92391 4.95286 5.08107 5.09270 5.12842 5.18536 5.21992 5.28558 5.35021 5.43147 5.45638 5.52219 5.55994 5.61352 5.66482 5.71889 5.74325 6.11115 6.55255 6.78587 7.01378 7.36171 8.90317 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.027689 B = 0.006211 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.991375 B = 4507.282349 C = 4997.625649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.196 3.804 4 H -0.011 1.011 5 C -0.495 4.495 6 H 0.030 0.970 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.949 3.051 10 H -0.264 1.264 11 H -0.300 1.300 12 H -0.251 1.251 13 N -0.678 5.678 14 C 0.077 3.923 15 C -0.067 4.067 16 H 0.075 0.925 17 C -0.096 4.096 18 C -0.088 4.088 19 C -0.106 4.106 20 C -0.105 4.105 21 C -0.078 4.078 22 C -0.115 4.115 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.263 0.737 30 H 0.334 0.666 31 H 0.017 0.983 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.110 9.586 -9.064 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.086 3.914 4 H 0.006 0.994 5 C -0.533 4.533 6 H 0.048 0.952 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.228 1.228 12 H -0.175 1.175 13 N -0.311 5.311 14 C -0.053 4.053 15 C -0.085 4.085 16 H 0.093 0.907 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.151 4.151 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.335 9.563 -9.204 18.119 hybrid contribution -0.133 -0.638 1.558 1.689 sum -12.467 8.925 -7.646 17.133 Atomic orbital electron populations 1.21831 0.94292 1.02382 1.02012 1.22003 0.96414 0.98138 1.00770 1.19377 0.93454 0.91064 0.87476 0.99360 1.21306 0.91742 1.35842 1.04459 0.95159 1.25830 0.95910 0.96864 1.00483 1.70062 1.10849 1.47813 1.30684 0.85850 0.79353 0.79591 0.77578 1.19045 1.22787 1.17484 1.60283 1.37476 1.03574 1.29717 1.21961 0.98569 0.88222 0.96535 1.21045 0.98240 0.95085 0.94166 0.90695 1.21406 0.97310 0.96206 0.98467 1.21062 0.98219 0.95026 0.96304 1.21504 0.95153 0.99904 0.97805 1.21493 0.97999 1.00733 0.94021 1.21026 0.97410 0.93570 0.97701 1.21557 0.95067 1.00720 0.97903 1.21498 0.97316 0.99951 0.96286 0.91033 0.91258 0.93460 0.91874 0.94410 0.92764 0.84727 0.96488 0.93861 0.94436 0.92182 0.91898 0.91518 0.91163 0.91184 0.90802 0.90881 0.90681 0.94066 0.94973 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 9.63 71.98 0.69 -3.87 16 2 C -0.14 -5.62 5.01 30.59 0.15 -5.47 16 3 C 0.20 9.25 1.62 44.17 0.07 9.32 16 4 H -0.01 -0.54 6.90 -2.39 -0.02 -0.56 16 5 C -0.49 -29.27 9.18 25.60 0.23 -29.04 16 6 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 7 C 0.01 0.32 5.45 84.65 0.46 0.78 16 8 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 9 Si 0.95 46.21 24.41 68.60 1.67 47.89 16 10 H -0.26 -12.17 6.83 99.48 0.68 -11.49 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.25 -11.36 6.53 99.48 0.65 -10.71 16 13 N -0.68 -27.42 5.84 -495.46 -2.89 -30.31 16 14 C 0.08 2.82 4.07 86.30 0.35 3.17 16 15 C -0.07 -1.91 2.41 -10.81 -0.03 -1.94 16 16 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 17 C -0.10 -2.98 5.16 30.60 0.16 -2.83 16 18 C -0.09 -2.29 3.19 -10.80 -0.03 -2.32 16 19 C -0.11 -2.09 5.71 30.59 0.17 -1.92 16 20 C -0.10 -1.96 5.71 30.59 0.17 -1.79 16 21 C -0.08 -1.86 2.72 -10.81 -0.03 -1.89 16 22 C -0.11 -3.04 5.36 30.60 0.16 -2.87 16 23 C -0.11 -3.13 5.71 30.59 0.17 -2.95 16 24 H 0.07 1.90 6.65 -2.39 -0.02 1.88 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.04 1.68 3.22 -2.39 -0.01 1.67 16 29 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 30 H 0.33 11.41 6.62 -89.69 -0.59 10.81 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 1.91 6.52 -2.39 -0.02 1.89 16 33 H 0.04 1.50 7.42 -2.38 -0.02 1.49 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.29 6.54 -2.39 -0.02 1.28 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -67.39 317.96 2.07 -65.32 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.27 Total: 21.95 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 2.72 Total: -43.62 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -2.59 Total: -91.54 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.89 kcal Total: -67.39 2.07 -65.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400045587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.820 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds