Wall clock time and date at job start Mon Mar 30 2020 07:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47175 * 2 1 4 4 H 1.08997 * 109.46944 * 304.32207 * 3 2 1 5 5 C 1.50702 * 109.47391 * 184.31897 * 3 2 1 6 6 H 1.07992 * 120.00373 * 240.00574 * 5 3 2 7 7 C 1.37879 * 119.99372 * 60.00088 * 5 3 2 8 8 N 1.31514 * 120.00645 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99589 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46839 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46963 * 119.99858 * 9 7 5 12 12 H 1.48502 * 109.46741 * 239.99981 * 9 7 5 13 13 N 1.46897 * 109.46882 * 64.32017 * 3 2 1 14 14 C 1.46902 * 111.00181 * 205.97823 * 13 3 2 15 15 C 1.53002 * 109.47233 * 174.57884 * 14 13 3 16 16 H 1.09000 * 109.46813 * 304.99996 * 15 14 13 17 17 C 1.52999 * 109.47126 * 65.00226 * 15 14 13 18 18 C 1.52998 * 109.46911 * 119.99691 * 17 15 14 19 19 C 1.52997 * 109.47371 * 300.00091 * 18 17 15 20 20 C 1.52999 * 109.47177 * 60.00072 * 19 18 17 21 21 C 1.52998 * 109.47165 * 0.02562 * 20 19 18 22 22 C 1.53002 * 109.47317 * 59.99850 * 21 20 19 23 23 C 1.52999 * 109.47126 * 300.00174 * 22 21 20 24 24 H 1.09006 * 109.47227 * 294.64982 * 1 2 3 25 25 H 1.09004 * 109.46969 * 54.64840 * 1 2 3 26 26 H 1.08995 * 109.46656 * 174.65023 * 1 2 3 27 27 H 1.09002 * 109.47584 * 240.00255 * 2 1 3 28 28 H 1.08997 * 109.47379 * 119.99859 * 2 1 3 29 29 H 0.96992 * 120.00299 * 179.97438 * 8 7 5 30 30 H 1.00904 * 111.00480 * 82.02604 * 13 3 2 31 31 H 1.09003 * 109.47095 * 294.58224 * 14 13 3 32 32 H 1.09000 * 109.46833 * 54.58033 * 14 13 3 33 33 H 1.08998 * 109.47023 * 240.00016 * 17 15 14 34 34 H 1.08996 * 109.47030 * 0.02562 * 17 15 14 35 35 H 1.09001 * 109.47119 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.47145 * 299.99644 * 19 18 17 37 37 H 1.09007 * 109.47051 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46952 * 239.99770 * 20 19 18 39 39 H 1.09002 * 109.46946 * 120.00207 * 20 19 18 40 40 H 1.09001 * 109.47052 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.46537 * 59.99974 * 22 21 20 42 42 H 1.09000 * 109.46813 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47023 * 240.00016 * 23 22 21 44 44 H 1.08999 * 109.47285 * 119.99494 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6148 1.9782 -0.8487 5 6 3.5432 1.4440 -0.1070 6 1 4.1398 1.8915 0.6741 7 6 4.1568 0.8737 -1.2022 8 7 3.4304 0.3290 -2.1536 9 14 6.0202 0.8748 -1.3345 10 1 6.6006 1.5447 -0.1431 11 1 6.5122 -0.5245 -1.4050 12 1 6.4288 1.6056 -2.5610 13 7 1.6374 2.1042 1.2482 14 6 1.5380 3.5584 1.0649 15 6 0.9882 4.1970 2.3419 16 1 0.0408 3.7263 2.6047 17 6 1.9891 4.0003 3.4823 18 6 2.4354 5.3652 4.0101 19 6 3.0978 6.1571 2.8810 20 6 2.0969 6.3537 1.7407 21 6 0.7670 5.6936 2.1099 22 6 0.2174 6.3328 3.3867 23 6 1.2184 6.1361 4.5271 24 1 -0.3634 0.4286 0.9341 25 1 -0.3633 0.5946 -0.8382 26 1 -0.3632 -1.0232 -0.0958 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8621 -0.0718 -2.9241 30 1 2.2720 1.8770 1.9990 31 1 2.5261 3.9660 0.8511 32 1 0.8679 3.7747 0.2329 33 1 1.5171 3.4362 4.2867 34 1 2.8563 3.4524 3.1140 35 1 3.1481 5.2251 4.8229 36 1 3.9650 5.6087 2.5129 37 1 3.4162 7.1293 3.2573 38 1 2.4887 5.8988 0.8309 39 1 1.9396 7.4196 1.5752 40 1 0.0541 5.8334 1.2972 41 1 0.0604 7.3985 3.2209 42 1 -0.7303 5.8627 3.6494 43 1 0.7463 5.5723 5.3317 44 1 1.5367 7.1084 4.9029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400045589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:29 Heat of formation + Delta-G solvation = -54.742469 kcal Electronic energy + Delta-G solvation = -19750.033133 eV Core-core repulsion = 17085.470929 eV Total energy + Delta-G solvation = -2664.562205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44185 -37.92742 -34.82326 -33.38255 -32.26500 -31.66666 -31.12729 -28.28719 -25.77977 -24.35505 -23.39557 -22.80716 -21.72542 -21.29965 -18.76726 -17.36622 -17.31903 -16.90051 -16.68952 -16.34551 -15.46221 -15.17619 -14.59644 -14.28834 -13.97071 -13.64260 -13.24933 -13.16399 -13.01208 -12.93787 -12.88754 -12.85205 -12.80695 -12.60149 -12.51431 -12.43742 -12.17876 -11.88921 -11.55882 -11.47900 -11.23145 -11.02331 -10.62770 -10.60301 -10.53592 -10.45504 -8.99932 -8.06390 -6.29281 1.34449 1.36947 1.47074 2.37977 3.12248 3.55132 3.71963 3.79268 3.94783 4.32912 4.41608 4.45879 4.49676 4.50438 4.55176 4.59222 4.60156 4.62048 4.75566 4.75704 4.80978 4.91325 4.94255 4.97732 5.15764 5.17062 5.18353 5.23450 5.33977 5.41144 5.44393 5.50369 5.51184 5.51826 5.56636 5.60631 5.65217 5.69639 5.77783 6.10841 6.20591 6.40574 6.84016 7.02946 7.42316 8.89799 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.006287 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.734808 B = 4452.468684 C = 5190.860565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.221 3.779 4 H -0.006 1.006 5 C -0.557 4.557 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.281 1.281 13 N -0.679 5.679 14 C 0.080 3.920 15 C -0.067 4.067 16 H 0.070 0.930 17 C -0.105 4.105 18 C -0.084 4.084 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.080 4.080 22 C -0.107 4.107 23 C -0.107 4.107 24 H 0.057 0.943 25 H 0.028 0.972 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.328 0.672 31 H 0.009 0.991 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 11.421 11.762 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.596 4.596 6 H 0.065 0.935 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.207 1.207 13 N -0.309 5.309 14 C -0.050 4.050 15 C -0.086 4.086 16 H 0.088 0.912 17 C -0.142 4.142 18 C -0.103 4.103 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.099 4.099 22 C -0.144 4.144 23 C -0.144 4.144 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.184 11.219 11.480 16.868 hybrid contribution 2.149 -0.161 -0.869 2.324 sum -3.034 11.058 10.611 15.623 Atomic orbital electron populations 1.21536 0.96368 0.99510 1.00579 1.21358 0.94433 0.98344 0.99966 1.18926 0.91474 0.91523 0.86863 0.98768 1.22175 0.94057 1.37652 1.05710 0.93497 1.25668 1.02146 0.94789 0.95441 1.70011 1.36373 1.38743 1.09922 0.85649 0.81102 0.77879 0.77863 1.19579 1.20310 1.20729 1.60847 1.54447 1.07664 1.07901 1.21854 0.97449 0.88589 0.97120 1.21064 0.98789 0.94938 0.93832 0.91200 1.21554 0.98104 0.96992 0.97584 1.21049 0.97556 0.94502 0.97182 1.21510 0.97383 1.00218 0.95823 1.21558 0.95480 1.00480 0.97818 1.21028 0.96743 0.93776 0.98311 1.21496 0.98372 1.00675 0.93872 1.21519 0.95112 1.00277 0.97528 0.92394 0.95244 0.93649 0.92169 0.95323 0.92870 0.85538 0.97284 0.94124 0.91510 0.94113 0.90896 0.94068 0.90740 0.94015 0.90961 0.91801 0.90985 0.91694 0.91512 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.73 71.98 0.70 -4.39 16 2 C -0.10 -5.05 5.45 30.60 0.17 -4.89 16 3 C 0.22 11.37 1.98 44.17 0.09 11.46 16 4 H -0.01 -0.33 7.70 -2.39 -0.02 -0.35 16 5 C -0.56 -30.93 8.48 25.60 0.22 -30.71 16 6 H 0.05 2.60 7.73 -2.91 -0.02 2.58 16 7 C 0.02 1.09 5.29 84.66 0.45 1.53 16 8 N -0.91 -53.03 11.30 21.45 0.24 -52.79 16 9 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.68 -29.12 5.72 -495.43 -2.84 -31.96 16 14 C 0.08 3.07 4.24 86.30 0.37 3.44 16 15 C -0.07 -1.99 2.43 -10.78 -0.03 -2.01 16 16 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.10 -2.87 4.94 30.59 0.15 -2.72 16 18 C -0.08 -1.90 3.20 -10.78 -0.03 -1.94 16 19 C -0.11 -2.68 5.71 30.59 0.17 -2.51 16 20 C -0.12 -2.94 5.36 30.59 0.16 -2.77 16 21 C -0.08 -1.98 2.72 -10.78 -0.03 -2.01 16 22 C -0.11 -2.06 5.71 30.59 0.17 -1.89 16 23 C -0.11 -1.96 5.71 30.61 0.17 -1.79 16 24 H 0.06 2.26 7.89 -2.38 -0.02 2.24 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 3.34 5.97 -2.39 -0.01 3.32 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.33 13.93 7.02 -89.69 -0.63 13.30 16 31 H 0.01 0.38 6.69 -2.39 -0.02 0.37 16 32 H 0.04 1.66 7.92 -2.39 -0.02 1.64 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.31 6.65 -2.39 -0.02 1.29 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.04 1.26 6.54 -2.39 -0.02 1.25 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -58.82 325.21 2.48 -56.34 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.31 Total: 23.44 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 2.73 Total: -41.20 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.59 Total: -84.75 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -58.82 2.48 -56.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400045589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.601 kcal (2) G-P(sol) polarization free energy of solvation -58.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds