Wall clock time and date at job start Mon Mar 30 2020 07:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46776 * 2 1 4 4 H 1.09003 * 109.46873 * 180.79722 * 3 2 1 5 5 C 1.50702 * 109.47174 * 300.79332 * 3 2 1 6 6 H 1.08000 * 119.99787 * 119.72448 * 5 3 2 7 7 C 1.37867 * 120.00086 * 300.00311 * 5 3 2 8 8 N 1.31516 * 120.00468 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00080 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47035 * 89.99684 * 9 7 5 11 11 H 1.48492 * 109.47545 * 209.99659 * 9 7 5 12 12 H 1.48498 * 109.47092 * 330.00172 * 9 7 5 13 13 N 1.46902 * 109.47197 * 60.79679 * 3 2 1 14 14 C 1.46900 * 111.00196 * 85.92735 * 13 3 2 15 15 C 1.52998 * 109.47066 * 175.52171 * 14 13 3 16 16 H 1.08999 * 109.47097 * 304.99393 * 15 14 13 17 17 C 1.52998 * 109.47429 * 65.00074 * 15 14 13 18 18 C 1.52997 * 109.47098 * 119.99988 * 17 15 14 19 19 C 1.53003 * 109.47369 * 60.00001 * 18 17 15 20 20 C 1.53001 * 109.46679 * 299.99928 * 19 18 17 21 21 C 1.52998 * 109.47385 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.46959 * 299.99817 * 21 20 19 23 23 C 1.52996 * 109.46934 * 60.00421 * 22 21 20 24 24 H 1.09002 * 109.46939 * 65.17438 * 1 2 3 25 25 H 1.09003 * 109.46633 * 185.17055 * 1 2 3 26 26 H 1.08989 * 109.47179 * 305.17565 * 1 2 3 27 27 H 1.08994 * 109.47604 * 240.00620 * 2 1 3 28 28 H 1.09000 * 109.46967 * 119.99681 * 2 1 3 29 29 H 0.97001 * 120.00490 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00064 * 209.88307 * 13 3 2 31 31 H 1.09006 * 109.46886 * 295.52323 * 14 13 3 32 32 H 1.08996 * 109.47134 * 55.51327 * 14 13 3 33 33 H 1.08993 * 109.46876 * 239.99913 * 17 15 14 34 34 H 1.09000 * 109.47099 * 359.97438 * 17 15 14 35 35 H 1.09004 * 109.47278 * 180.02562 * 18 17 15 36 36 H 1.09003 * 109.46705 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.46777 * 60.00061 * 19 18 17 38 38 H 1.09008 * 109.46817 * 239.99391 * 20 19 18 39 39 H 1.09000 * 109.46539 * 120.00436 * 20 19 18 40 40 H 1.09002 * 109.46857 * 180.02562 * 21 20 19 41 41 H 1.09008 * 109.46522 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47192 * 299.99792 * 22 21 20 43 43 H 1.09005 * 109.46774 * 239.99795 * 23 22 21 44 44 H 1.09000 * 109.47201 * 119.99684 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4427 -0.0143 5 6 1.5216 2.1587 -1.2205 6 1 0.8984 3.0336 -1.1092 7 6 1.8383 1.6934 -2.4791 8 7 2.5931 0.6250 -2.6147 9 14 1.1951 2.5806 -3.9920 10 1 2.1674 3.6246 -4.4043 11 1 1.0159 1.6065 -5.0983 12 1 -0.1092 3.2162 -3.6760 13 7 1.5661 2.1295 1.2090 14 6 2.4765 1.8964 2.3380 15 6 2.0126 2.7149 3.5446 16 1 1.9306 3.7644 3.2619 17 6 0.6483 2.2047 4.0128 18 6 0.7543 1.7201 5.4601 19 6 1.2000 2.8787 6.3546 20 6 2.5643 3.3887 5.8863 21 6 3.0284 2.5699 4.6801 22 6 3.1437 1.0969 5.0776 23 6 1.7794 0.5868 5.5458 24 1 -0.3633 0.4315 -0.9327 25 1 -0.3633 -1.0235 0.0926 26 1 -0.3633 0.5920 0.8399 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.8162 0.2979 -3.5002 30 1 1.4450 3.1168 1.0399 31 1 2.4733 0.8370 2.5946 32 1 3.4857 2.1996 2.0595 33 1 -0.0817 3.0119 3.9525 34 1 0.3305 1.3796 3.3753 35 1 -0.2176 1.3562 5.7936 36 1 1.2750 2.5334 7.3858 37 1 0.4700 3.6858 6.2943 38 1 3.2878 3.2858 6.6951 39 1 2.4823 4.4383 5.6037 40 1 4.0007 2.9330 4.3468 41 1 3.4748 0.5136 4.2183 42 1 3.8671 0.9943 5.8864 43 1 1.8548 0.2419 6.5771 44 1 1.4620 -0.2389 4.9088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400045591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:32 Heat of formation + Delta-G solvation = -37.778627 kcal Electronic energy + Delta-G solvation = -19758.450105 eV Core-core repulsion = 17094.623508 eV Total energy + Delta-G solvation = -2663.826597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36816 -36.18932 -33.18647 -31.39528 -31.01739 -30.74245 -29.54577 -26.30523 -24.01548 -23.04138 -22.44002 -21.81555 -20.70143 -18.91250 -16.61877 -16.30961 -16.05651 -15.62011 -15.01644 -14.75545 -14.07059 -13.30744 -13.23755 -12.75460 -12.51021 -12.13751 -11.98539 -11.93544 -11.83503 -11.82725 -11.75048 -11.53830 -11.23733 -10.91931 -10.79545 -10.69532 -10.37955 -10.27777 -10.02646 -9.79366 -9.58855 -9.55435 -9.45815 -9.21671 -8.71786 -8.42571 -7.13098 -5.98219 -4.03392 3.30762 3.37892 3.41400 4.42761 4.66855 4.73247 4.79423 5.24475 5.33648 5.39131 5.42667 5.48213 5.51607 5.52267 5.57679 5.63853 5.74191 5.76734 5.87096 6.04390 6.12657 6.20232 6.28189 6.33241 6.38875 6.43703 6.50126 6.50880 6.58836 6.71141 6.74381 6.77286 6.88490 6.91716 7.28453 7.38965 7.55584 7.78488 7.84251 7.91064 8.32623 8.47054 8.75511 9.07276 9.61393 11.07718 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.037284 B = 0.005089 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.807626 B = 5500.214198 C = 5634.218363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.067 3.933 15 C -0.077 4.077 16 H 0.062 0.938 17 C -0.098 4.098 18 C -0.088 4.088 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.081 4.081 22 C -0.114 4.114 23 C -0.111 4.111 24 H 0.050 0.950 25 H 0.011 0.989 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.008 0.992 29 H 0.260 0.740 30 H 0.327 0.673 31 H 0.064 0.936 32 H 0.013 0.987 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 2.287 15.786 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.015 0.985 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.314 5.314 14 C -0.063 4.063 15 C -0.096 4.096 16 H 0.080 0.920 17 C -0.136 4.136 18 C -0.107 4.107 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.100 4.100 22 C -0.151 4.151 23 C -0.148 4.148 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.141 1.649 15.807 15.934 hybrid contribution 0.522 0.971 -1.168 1.606 sum -0.619 2.621 14.639 14.885 Atomic orbital electron populations 1.21435 0.97581 0.97018 1.01543 1.21408 0.94972 0.98346 0.99202 1.19109 0.92925 0.91520 0.85632 0.98453 1.21208 1.31305 1.11982 0.90419 0.92396 1.24882 0.95150 0.94990 0.98856 1.69891 1.37166 1.22922 1.22892 0.86599 0.79292 0.79379 0.82747 1.20878 1.21282 1.19894 1.60677 1.48521 1.15600 1.06606 1.22047 0.93633 0.99321 0.91327 1.21149 0.94864 0.99380 0.94211 0.91986 1.21489 0.96357 1.01376 0.94367 1.21085 0.98001 0.95191 0.96385 1.21528 0.96951 0.97964 0.98468 1.21513 0.96769 0.99114 0.97460 1.21038 0.98543 0.95349 0.95063 1.21547 0.96893 0.96012 1.00668 1.21504 0.95219 0.97747 1.00343 0.93074 0.96993 0.93366 0.89775 0.97315 0.93042 0.85580 0.91781 0.96879 0.92775 0.90285 0.91835 0.92703 0.92383 0.92562 0.92339 0.91690 0.91568 0.92754 0.92799 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.47 37.16 0.35 -2.33 16 2 C -0.10 -2.47 5.59 -26.72 -0.15 -2.62 16 3 C 0.22 5.38 2.30 -68.86 -0.16 5.23 16 4 H 0.00 -0.06 7.71 -51.93 -0.40 -0.46 16 5 C -0.51 -13.74 7.38 -34.44 -0.25 -14.00 16 6 H 0.06 1.55 7.61 -52.49 -0.40 1.15 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.36 11.33 55.43 0.63 -24.73 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.20 5.08 -107.94 -0.55 -14.74 16 14 C 0.07 1.19 4.15 -3.83 -0.02 1.17 16 15 C -0.08 -1.12 2.33 -90.59 -0.21 -1.33 16 16 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 17 C -0.10 -1.38 5.17 -26.73 -0.14 -1.52 16 18 C -0.09 -1.05 3.20 -90.59 -0.29 -1.34 16 19 C -0.11 -1.20 5.71 -26.73 -0.15 -1.35 16 20 C -0.11 -1.22 5.71 -26.73 -0.15 -1.37 16 21 C -0.08 -1.02 2.72 -90.59 -0.25 -1.27 16 22 C -0.11 -1.39 5.36 -26.73 -0.14 -1.54 16 23 C -0.11 -1.31 5.71 -26.71 -0.15 -1.47 16 24 H 0.05 1.24 7.39 -51.93 -0.38 0.86 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 1.05 7.47 -51.93 -0.39 0.66 16 27 H 0.08 2.29 6.09 -51.93 -0.32 1.98 16 28 H 0.01 0.19 7.58 -51.93 -0.39 -0.20 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 6.77 8.13 -39.29 -0.32 6.45 16 31 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 32 H 0.01 0.25 7.94 -51.93 -0.41 -0.16 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.89 6.55 -51.92 -0.34 0.55 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 323.42 15.07 4.87 4.87 Total: -1.00 -27.11 323.42 -10.14 -37.25 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.27 Total: 3.21 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -1.81 Total: -22.11 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.08 Total: -39.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.11 -10.14 -37.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400045591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.526 kcal (2) G-P(sol) polarization free energy of solvation -27.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds