Wall clock time and date at job start Mon Mar 30 2020 07:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46776 * 2 1 4 4 H 1.09003 * 109.46873 * 180.79722 * 3 2 1 5 5 C 1.50702 * 109.47174 * 300.79332 * 3 2 1 6 6 H 1.08000 * 119.99787 * 119.72448 * 5 3 2 7 7 C 1.37867 * 120.00086 * 300.00311 * 5 3 2 8 8 N 1.31516 * 120.00468 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00080 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47035 * 89.99684 * 9 7 5 11 11 H 1.48492 * 109.47545 * 209.99659 * 9 7 5 12 12 H 1.48498 * 109.47092 * 330.00172 * 9 7 5 13 13 N 1.46902 * 109.47197 * 60.79679 * 3 2 1 14 14 C 1.46900 * 111.00196 * 85.92735 * 13 3 2 15 15 C 1.52998 * 109.47066 * 175.52171 * 14 13 3 16 16 H 1.08999 * 109.47097 * 304.99393 * 15 14 13 17 17 C 1.52998 * 109.47429 * 65.00074 * 15 14 13 18 18 C 1.52997 * 109.47098 * 119.99988 * 17 15 14 19 19 C 1.53003 * 109.47369 * 60.00001 * 18 17 15 20 20 C 1.53001 * 109.46679 * 299.99928 * 19 18 17 21 21 C 1.52998 * 109.47385 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.46959 * 299.99817 * 21 20 19 23 23 C 1.52996 * 109.46934 * 60.00421 * 22 21 20 24 24 H 1.09002 * 109.46939 * 65.17438 * 1 2 3 25 25 H 1.09003 * 109.46633 * 185.17055 * 1 2 3 26 26 H 1.08989 * 109.47179 * 305.17565 * 1 2 3 27 27 H 1.08994 * 109.47604 * 240.00620 * 2 1 3 28 28 H 1.09000 * 109.46967 * 119.99681 * 2 1 3 29 29 H 0.97001 * 120.00490 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00064 * 209.88307 * 13 3 2 31 31 H 1.09006 * 109.46886 * 295.52323 * 14 13 3 32 32 H 1.08996 * 109.47134 * 55.51327 * 14 13 3 33 33 H 1.08993 * 109.46876 * 239.99913 * 17 15 14 34 34 H 1.09000 * 109.47099 * 359.97438 * 17 15 14 35 35 H 1.09004 * 109.47278 * 180.02562 * 18 17 15 36 36 H 1.09003 * 109.46705 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.46777 * 60.00061 * 19 18 17 38 38 H 1.09008 * 109.46817 * 239.99391 * 20 19 18 39 39 H 1.09000 * 109.46539 * 120.00436 * 20 19 18 40 40 H 1.09002 * 109.46857 * 180.02562 * 21 20 19 41 41 H 1.09008 * 109.46522 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47192 * 299.99792 * 22 21 20 43 43 H 1.09005 * 109.46774 * 239.99795 * 23 22 21 44 44 H 1.09000 * 109.47201 * 119.99684 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4427 -0.0143 5 6 1.5216 2.1587 -1.2205 6 1 0.8984 3.0336 -1.1092 7 6 1.8383 1.6934 -2.4791 8 7 2.5931 0.6250 -2.6147 9 14 1.1951 2.5806 -3.9920 10 1 2.1674 3.6246 -4.4043 11 1 1.0159 1.6065 -5.0983 12 1 -0.1092 3.2162 -3.6760 13 7 1.5661 2.1295 1.2090 14 6 2.4765 1.8964 2.3380 15 6 2.0126 2.7149 3.5446 16 1 1.9306 3.7644 3.2619 17 6 0.6483 2.2047 4.0128 18 6 0.7543 1.7201 5.4601 19 6 1.2000 2.8787 6.3546 20 6 2.5643 3.3887 5.8863 21 6 3.0284 2.5699 4.6801 22 6 3.1437 1.0969 5.0776 23 6 1.7794 0.5868 5.5458 24 1 -0.3633 0.4315 -0.9327 25 1 -0.3633 -1.0235 0.0926 26 1 -0.3633 0.5920 0.8399 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.8162 0.2979 -3.5002 30 1 1.4450 3.1168 1.0399 31 1 2.4733 0.8370 2.5946 32 1 3.4857 2.1996 2.0595 33 1 -0.0817 3.0119 3.9525 34 1 0.3305 1.3796 3.3753 35 1 -0.2176 1.3562 5.7936 36 1 1.2750 2.5334 7.3858 37 1 0.4700 3.6858 6.2943 38 1 3.2878 3.2858 6.6951 39 1 2.4823 4.4383 5.6037 40 1 4.0007 2.9330 4.3468 41 1 3.4748 0.5136 4.2183 42 1 3.8671 0.9943 5.8864 43 1 1.8548 0.2419 6.5771 44 1 1.4620 -0.2389 4.9088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400045591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:32 Heat of formation + Delta-G solvation = -51.208508 kcal Electronic energy + Delta-G solvation = -19759.032468 eV Core-core repulsion = 17094.623508 eV Total energy + Delta-G solvation = -2664.408961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41665 -38.01264 -34.90315 -33.12208 -32.17156 -31.66083 -31.10451 -28.20153 -25.62968 -24.88183 -23.37646 -22.87226 -21.93613 -20.85871 -18.40080 -17.42895 -17.29091 -16.82543 -16.51554 -16.21042 -15.79392 -15.03192 -14.97088 -14.21747 -13.95115 -13.75280 -13.42740 -13.02218 -12.87589 -12.85571 -12.82684 -12.81194 -12.77996 -12.56640 -12.42151 -12.36421 -12.17843 -11.79596 -11.63322 -11.36348 -11.21887 -10.79347 -10.64361 -10.57096 -10.51466 -10.49257 -8.94773 -8.09055 -6.21511 1.41254 1.42949 1.52871 2.42764 3.19518 3.55871 3.71239 3.79686 3.95297 4.28752 4.43694 4.45146 4.50428 4.53057 4.55735 4.56913 4.63120 4.64841 4.74927 4.80276 4.83335 4.91049 4.91790 4.99506 5.11751 5.18890 5.26040 5.31164 5.36147 5.39888 5.45163 5.52118 5.55614 5.57873 5.61502 5.65627 5.70525 5.73313 5.83041 5.92233 6.28808 6.53102 6.83940 7.06506 7.47606 8.96175 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.037284 B = 0.005089 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.807626 B = 5500.214198 C = 5634.218363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.096 4.096 3 C 0.222 3.778 4 H -0.042 1.042 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.675 5.675 14 C 0.073 3.927 15 C -0.070 4.070 16 H 0.060 0.940 17 C -0.095 4.095 18 C -0.086 4.086 19 C -0.108 4.108 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.114 4.114 23 C -0.110 4.110 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.055 0.945 32 H -0.002 1.002 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 3.132 17.451 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C 0.113 3.887 4 H -0.025 1.025 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.781 3.219 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.305 5.305 14 C -0.057 4.057 15 C -0.089 4.089 16 H 0.079 0.921 17 C -0.133 4.133 18 C -0.105 4.105 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.099 4.099 22 C -0.151 4.151 23 C -0.147 4.147 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.074 0.926 32 H 0.016 0.984 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.025 2.503 17.489 17.783 hybrid contribution 0.837 0.682 -1.672 1.990 sum -1.187 3.185 15.818 16.179 Atomic orbital electron populations 1.21285 0.95855 0.98389 1.00717 1.21279 0.96371 0.97720 0.98093 1.18907 0.90451 0.92304 0.87008 1.02497 1.21464 1.31207 1.12068 0.91352 0.92446 1.25643 0.95327 0.95648 1.01703 1.70031 1.38145 1.24170 1.23453 0.85598 0.78889 0.78247 0.79154 1.20379 1.21085 1.19191 1.60611 1.48833 1.15319 1.05700 1.22043 0.92390 0.99547 0.91670 1.21081 0.95988 0.98400 0.93392 0.92107 1.21421 0.95696 1.00489 0.95661 1.21078 0.98611 0.95780 0.94989 1.21521 0.96688 0.97439 0.98938 1.21501 0.97387 0.98798 0.96821 1.21033 0.97667 0.96105 0.95138 1.21546 0.97725 0.95384 1.00492 1.21507 0.94745 0.97319 1.01177 0.95029 0.94814 0.92568 0.92650 0.96570 0.93075 0.85467 0.92618 0.98409 0.92498 0.92818 0.90934 0.90972 0.91851 0.90970 0.92048 0.92097 0.93624 0.90983 0.90814 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.47 71.98 0.68 -4.06 16 2 C -0.10 -4.80 5.59 30.60 0.17 -4.63 16 3 C 0.22 11.41 2.30 44.17 0.10 11.51 16 4 H -0.04 -2.48 7.71 -2.39 -0.02 -2.50 16 5 C -0.52 -28.56 7.38 25.60 0.19 -28.37 16 6 H 0.06 3.08 7.61 -2.91 -0.02 3.06 16 7 C 0.02 0.87 5.30 84.65 0.45 1.32 16 8 N -0.92 -53.49 11.33 21.44 0.24 -53.25 16 9 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.67 -28.56 5.08 -495.43 -2.52 -31.07 16 14 C 0.07 2.67 4.15 86.30 0.36 3.03 16 15 C -0.07 -1.99 2.33 -10.78 -0.03 -2.01 16 16 H 0.06 1.75 8.12 -2.39 -0.02 1.73 16 17 C -0.10 -2.57 5.17 30.59 0.16 -2.41 16 18 C -0.09 -1.86 3.20 -10.78 -0.03 -1.90 16 19 C -0.11 -1.96 5.71 30.60 0.17 -1.78 16 20 C -0.11 -2.04 5.71 30.59 0.17 -1.87 16 21 C -0.08 -1.91 2.72 -10.78 -0.03 -1.94 16 22 C -0.11 -2.64 5.36 30.59 0.16 -2.47 16 23 C -0.11 -2.40 5.71 30.61 0.17 -2.23 16 24 H 0.03 1.52 7.39 -2.39 -0.02 1.50 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 2.41 7.47 -2.39 -0.02 2.40 16 27 H 0.05 3.11 6.09 -2.39 -0.01 3.09 16 28 H 0.02 0.75 7.58 -2.39 -0.02 0.73 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.33 13.75 8.13 -89.70 -0.73 13.02 16 31 H 0.06 2.13 6.16 -2.38 -0.01 2.12 16 32 H 0.00 -0.09 7.94 -2.39 -0.02 -0.11 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.72 7.42 -2.39 -0.02 1.71 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.23 6.55 -2.38 -0.02 1.21 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -58.47 323.42 2.67 -55.80 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.21 Total: 20.49 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 2.71 Total: -37.80 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.28 Total: -84.32 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -58.47 2.67 -55.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400045591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.589 kcal (2) G-P(sol) polarization free energy of solvation -58.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds