Wall clock time and date at job start Mon Mar 30 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.08996 * 109.47560 * 53.37695 * 3 2 1 5 5 C 1.50706 * 109.46807 * 173.37695 * 3 2 1 6 6 H 1.07996 * 120.00082 * 119.54985 * 5 3 2 7 7 C 1.37876 * 119.99834 * 299.54521 * 5 3 2 8 8 N 1.31518 * 119.99862 * 167.88475 * 7 5 3 9 9 Si 1.86803 * 120.00313 * 347.89334 * 7 5 3 10 10 H 1.48496 * 109.46752 * 264.50180 * 9 7 5 11 11 H 1.48505 * 109.46986 * 24.49863 * 9 7 5 12 12 H 1.48494 * 109.47080 * 144.49890 * 9 7 5 13 13 N 1.46896 * 109.47154 * 293.37033 * 3 2 1 14 14 C 1.46901 * 110.99956 * 104.20006 * 13 3 2 15 15 C 1.53002 * 109.47324 * 183.67387 * 14 13 3 16 16 C 1.53007 * 109.46961 * 184.62309 * 15 14 13 17 17 C 1.52994 * 109.46989 * 65.23486 * 16 15 14 18 18 C 1.52995 * 117.50420 * 248.74452 * 17 16 15 19 19 C 1.53002 * 117.49865 * 180.08370 * 17 16 15 20 20 C 1.52999 * 109.46871 * 185.23911 * 16 15 14 21 21 C 1.52998 * 117.50067 * 134.01808 * 20 16 15 22 22 C 1.53000 * 117.50053 * 65.35429 * 20 16 15 23 23 H 1.09002 * 109.47103 * 186.98195 * 1 2 3 24 24 H 1.09000 * 109.46975 * 306.98715 * 1 2 3 25 25 H 1.08999 * 109.46703 * 66.98405 * 1 2 3 26 26 H 1.09004 * 109.46813 * 239.99263 * 2 1 3 27 27 H 1.08999 * 109.46750 * 120.00125 * 2 1 3 28 28 H 0.96999 * 119.99794 * 179.97438 * 8 7 5 29 29 H 1.00905 * 111.00299 * 340.24998 * 13 3 2 30 30 H 1.09006 * 109.47001 * 303.67433 * 14 13 3 31 31 H 1.08994 * 109.46978 * 63.67007 * 14 13 3 32 32 H 1.08997 * 109.46938 * 304.62047 * 15 14 13 33 33 H 1.09003 * 109.47428 * 64.62229 * 15 14 13 34 34 H 1.08998 * 109.46624 * 305.23805 * 16 15 14 35 35 H 1.09007 * 115.54974 * 34.42241 * 17 16 15 36 36 H 1.09010 * 117.49594 * 0.02562 * 18 17 16 37 37 H 1.08994 * 117.50553 * 145.02321 * 18 17 16 38 38 H 1.09002 * 117.50483 * 214.98425 * 19 17 16 39 39 H 1.09002 * 117.49438 * 359.97438 * 19 17 16 40 40 H 1.09007 * 115.54562 * 279.68654 * 20 16 15 41 41 H 1.09008 * 117.49654 * 359.97438 * 21 20 16 42 42 H 1.08994 * 117.50052 * 145.01947 * 21 20 16 43 43 H 1.08999 * 117.49797 * 214.97987 * 22 20 16 44 44 H 1.09000 * 117.49891 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5832 1.9894 0.8247 5 6 3.5382 1.4455 0.1639 6 1 4.1644 1.8762 -0.6033 7 6 4.1092 0.8985 1.2933 8 7 5.4059 0.6829 1.3361 9 14 3.0411 0.4632 2.7628 10 1 3.0617 1.5826 3.7384 11 1 1.6469 0.2278 2.3089 12 1 3.5657 -0.7665 3.4091 13 7 1.6853 2.0872 -1.2713 14 6 0.5552 3.0094 -1.0966 15 6 0.1566 3.5907 -2.4546 16 6 -0.9428 4.6367 -2.2587 17 6 -0.3852 5.8201 -1.4653 18 6 -0.9087 6.0264 -0.0426 19 6 -1.3375 6.9786 -1.1618 20 6 -1.4328 5.1233 -3.6239 21 6 -2.9445 5.2196 -3.8388 22 6 -2.1432 4.1088 -4.5223 23 1 -0.3633 -1.0201 0.1249 24 1 -0.3633 0.6183 0.8209 25 1 -0.3633 0.4018 -0.9459 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8077 0.2984 2.1308 29 1 1.4843 1.3996 -1.9819 30 1 -0.2907 2.4706 -0.6696 31 1 0.8465 3.8181 -0.4265 32 1 1.0249 4.0588 -2.9184 33 1 -0.2124 2.7918 -3.0977 34 1 -1.7740 4.1919 -1.7117 35 1 0.6595 6.0646 -1.6576 36 1 -1.6502 5.3187 0.3284 37 1 -0.2086 6.4069 0.7011 38 1 -0.9192 7.9852 -1.1539 39 1 -2.3610 6.8977 -1.5277 40 1 -0.8068 5.8729 -4.1082 41 1 -3.5901 4.9359 -3.0075 42 1 -3.3132 6.0322 -4.4646 43 1 -1.9849 4.1912 -5.5976 44 1 -2.2611 3.0946 -4.1408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400762516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:41 Heat of formation + Delta-G solvation = 35.210070 kcal Electronic energy + Delta-G solvation = -19022.807426 eV Core-core repulsion = 16362.145856 eV Total energy + Delta-G solvation = -2660.661570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.08014 -36.77675 -36.14028 -33.31043 -31.86373 -30.22030 -27.56406 -25.16106 -22.73257 -22.38150 -22.33958 -21.47169 -20.98120 -20.02537 -19.48539 -16.62792 -15.91879 -15.47624 -15.32134 -14.68092 -14.43027 -14.13579 -13.82940 -13.05330 -12.97031 -12.65410 -12.40652 -11.93992 -11.76223 -11.65440 -11.57769 -11.52396 -11.42586 -11.08915 -10.85353 -10.72019 -10.53874 -10.38317 -10.29515 -10.14564 -9.92484 -9.76857 -9.66045 -9.21328 -9.15382 -8.36551 -7.22956 -5.99523 -3.92189 3.30206 3.39485 3.42363 3.71979 3.86076 4.47761 4.49077 4.73156 4.80402 4.95480 5.04432 5.12379 5.19929 5.28634 5.35345 5.46170 5.53002 5.56136 5.67478 5.71881 5.78825 5.82796 5.86382 5.94183 6.00534 6.01307 6.03615 6.08590 6.12573 6.17093 6.23526 6.36549 6.49588 6.55502 6.64431 6.68732 6.81342 6.93474 7.23820 7.83777 8.04738 8.44632 8.80754 9.17488 9.66765 11.14255 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.026107 B = 0.005066 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.252837 B = 5525.811069 C = 5872.869526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.154 4.154 3 C 0.193 3.807 4 H 0.020 0.980 5 C -0.495 4.495 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.855 3.145 10 H -0.284 1.284 11 H -0.246 1.246 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.059 3.941 15 C -0.107 4.107 16 C -0.024 4.024 17 C -0.137 4.137 18 C -0.179 4.179 19 C -0.182 4.182 20 C -0.135 4.135 21 C -0.184 4.184 22 C -0.181 4.181 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.324 0.676 30 H 0.016 0.984 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.746 8.086 -7.455 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C 0.084 3.916 4 H 0.038 0.962 5 C -0.534 4.534 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.682 3.318 10 H -0.211 1.211 11 H -0.171 1.171 12 H -0.215 1.215 13 N -0.302 5.302 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.042 4.042 17 C -0.155 4.155 18 C -0.216 4.216 19 C -0.219 4.219 20 C -0.153 4.153 21 C -0.221 4.221 22 C -0.218 4.218 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.114 8.508 -7.271 19.619 hybrid contribution -1.184 -0.923 1.091 1.856 sum -17.297 7.584 -6.180 19.872 Atomic orbital electron populations 1.21914 0.98525 1.00083 1.00403 1.22726 0.92824 1.01716 1.02078 1.19545 0.96671 0.88163 0.87175 0.96211 1.21065 0.89450 1.37464 1.05402 0.90217 1.24930 0.94698 0.95225 0.98398 1.69954 1.10624 1.44559 1.28694 0.87457 0.82642 0.77968 0.83693 1.21063 1.17068 1.21479 1.60630 1.37129 1.22478 1.09994 1.22059 0.92232 0.96618 0.96169 1.21586 0.97779 0.97278 0.97874 1.20323 0.97561 0.93791 0.92572 1.22285 0.98871 0.96963 0.97398 1.22999 1.03699 1.03012 0.91922 1.22910 1.00091 0.95012 1.03851 1.22249 0.94122 1.01773 0.97152 1.22991 0.94389 1.01385 1.03323 1.22937 1.04969 0.95432 0.98496 0.94087 0.93672 0.93689 0.92423 0.91771 0.92913 0.85914 0.96600 0.91302 0.90972 0.92484 0.91573 0.87544 0.89136 0.88884 0.89319 0.89083 0.87880 0.89199 0.89233 0.89061 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.74 37.16 0.32 -2.35 16 2 C -0.15 -3.30 4.32 -26.73 -0.12 -3.42 16 3 C 0.19 4.53 1.73 -68.87 -0.12 4.41 16 4 H 0.02 0.49 6.63 -51.93 -0.34 0.14 16 5 C -0.50 -14.11 9.35 -34.44 -0.32 -14.43 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 7 C 0.07 1.98 5.36 -17.82 -0.10 1.89 16 8 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 9 Si 0.85 21.17 25.67 -169.99 -4.36 16.81 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.25 -5.65 5.12 56.52 0.29 -5.36 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 N -0.67 -13.67 6.11 -107.95 -0.66 -14.33 16 14 C 0.06 0.99 5.00 -3.82 -0.02 0.97 16 15 C -0.11 -1.46 4.84 -26.73 -0.13 -1.59 16 16 C -0.02 -0.27 2.11 -90.62 -0.19 -0.46 16 17 C -0.14 -1.61 4.10 -90.62 -0.37 -1.98 16 18 C -0.18 -2.07 10.05 -26.70 -0.27 -2.34 16 19 C -0.18 -1.86 9.88 -26.69 -0.26 -2.12 16 20 C -0.13 -1.37 4.73 -90.62 -0.43 -1.80 16 21 C -0.18 -1.66 10.18 -26.69 -0.27 -1.93 16 22 C -0.18 -1.72 9.74 -26.69 -0.26 -1.98 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.80 8.12 -51.93 -0.42 0.37 16 25 H 0.04 0.72 6.91 -51.93 -0.36 0.36 16 26 H 0.06 1.21 8.01 -51.93 -0.42 0.80 16 27 H 0.06 1.47 4.10 -51.93 -0.21 1.25 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.32 6.14 7.87 -39.29 -0.31 5.83 16 30 H 0.02 0.26 6.41 -51.93 -0.33 -0.07 16 31 H 0.07 1.24 7.13 -51.93 -0.37 0.87 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.74 7.50 -51.93 -0.39 0.35 16 34 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 35 H 0.11 1.35 8.11 -51.93 -0.42 0.93 16 36 H 0.09 1.03 8.05 -51.92 -0.42 0.61 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 0.80 8.08 -51.92 -0.42 0.38 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -29.70 339.28 -9.95 -39.65 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.28 Total: 6.97 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -2.53 Total: -27.13 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.11 Total: -41.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.36 Total: 16.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.70 -9.95 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400762516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.856 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds