Wall clock time and date at job start Mon Mar 30 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.08996 * 109.47560 * 53.37695 * 3 2 1 5 5 C 1.50706 * 109.46807 * 173.37695 * 3 2 1 6 6 H 1.07996 * 120.00082 * 119.54985 * 5 3 2 7 7 C 1.37876 * 119.99834 * 299.54521 * 5 3 2 8 8 N 1.31518 * 119.99862 * 167.88475 * 7 5 3 9 9 Si 1.86803 * 120.00313 * 347.89334 * 7 5 3 10 10 H 1.48496 * 109.46752 * 264.50180 * 9 7 5 11 11 H 1.48505 * 109.46986 * 24.49863 * 9 7 5 12 12 H 1.48494 * 109.47080 * 144.49890 * 9 7 5 13 13 N 1.46896 * 109.47154 * 293.37033 * 3 2 1 14 14 C 1.46901 * 110.99956 * 104.20006 * 13 3 2 15 15 C 1.53002 * 109.47324 * 183.67387 * 14 13 3 16 16 C 1.53007 * 109.46961 * 184.62309 * 15 14 13 17 17 C 1.52994 * 109.46989 * 65.23486 * 16 15 14 18 18 C 1.52995 * 117.50420 * 248.74452 * 17 16 15 19 19 C 1.53002 * 117.49865 * 180.08370 * 17 16 15 20 20 C 1.52999 * 109.46871 * 185.23911 * 16 15 14 21 21 C 1.52998 * 117.50067 * 134.01808 * 20 16 15 22 22 C 1.53000 * 117.50053 * 65.35429 * 20 16 15 23 23 H 1.09002 * 109.47103 * 186.98195 * 1 2 3 24 24 H 1.09000 * 109.46975 * 306.98715 * 1 2 3 25 25 H 1.08999 * 109.46703 * 66.98405 * 1 2 3 26 26 H 1.09004 * 109.46813 * 239.99263 * 2 1 3 27 27 H 1.08999 * 109.46750 * 120.00125 * 2 1 3 28 28 H 0.96999 * 119.99794 * 179.97438 * 8 7 5 29 29 H 1.00905 * 111.00299 * 340.24998 * 13 3 2 30 30 H 1.09006 * 109.47001 * 303.67433 * 14 13 3 31 31 H 1.08994 * 109.46978 * 63.67007 * 14 13 3 32 32 H 1.08997 * 109.46938 * 304.62047 * 15 14 13 33 33 H 1.09003 * 109.47428 * 64.62229 * 15 14 13 34 34 H 1.08998 * 109.46624 * 305.23805 * 16 15 14 35 35 H 1.09007 * 115.54974 * 34.42241 * 17 16 15 36 36 H 1.09010 * 117.49594 * 0.02562 * 18 17 16 37 37 H 1.08994 * 117.50553 * 145.02321 * 18 17 16 38 38 H 1.09002 * 117.50483 * 214.98425 * 19 17 16 39 39 H 1.09002 * 117.49438 * 359.97438 * 19 17 16 40 40 H 1.09007 * 115.54562 * 279.68654 * 20 16 15 41 41 H 1.09008 * 117.49654 * 359.97438 * 21 20 16 42 42 H 1.08994 * 117.50052 * 145.01947 * 21 20 16 43 43 H 1.08999 * 117.49797 * 214.97987 * 22 20 16 44 44 H 1.09000 * 117.49891 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5832 1.9894 0.8247 5 6 3.5382 1.4455 0.1639 6 1 4.1644 1.8762 -0.6033 7 6 4.1092 0.8985 1.2933 8 7 5.4059 0.6829 1.3361 9 14 3.0411 0.4632 2.7628 10 1 3.0617 1.5826 3.7384 11 1 1.6469 0.2278 2.3089 12 1 3.5657 -0.7665 3.4091 13 7 1.6853 2.0872 -1.2713 14 6 0.5552 3.0094 -1.0966 15 6 0.1566 3.5907 -2.4546 16 6 -0.9428 4.6367 -2.2587 17 6 -0.3852 5.8201 -1.4653 18 6 -0.9087 6.0264 -0.0426 19 6 -1.3375 6.9786 -1.1618 20 6 -1.4328 5.1233 -3.6239 21 6 -2.9445 5.2196 -3.8388 22 6 -2.1432 4.1088 -4.5223 23 1 -0.3633 -1.0201 0.1249 24 1 -0.3633 0.6183 0.8209 25 1 -0.3633 0.4018 -0.9459 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8077 0.2984 2.1308 29 1 1.4843 1.3996 -1.9819 30 1 -0.2907 2.4706 -0.6696 31 1 0.8465 3.8181 -0.4265 32 1 1.0249 4.0588 -2.9184 33 1 -0.2124 2.7918 -3.0977 34 1 -1.7740 4.1919 -1.7117 35 1 0.6595 6.0646 -1.6576 36 1 -1.6502 5.3187 0.3284 37 1 -0.2086 6.4069 0.7011 38 1 -0.9192 7.9852 -1.1539 39 1 -2.3610 6.8977 -1.5277 40 1 -0.8068 5.8729 -4.1082 41 1 -3.5901 4.9359 -3.0075 42 1 -3.3132 6.0322 -4.4646 43 1 -1.9849 4.1912 -5.5976 44 1 -2.2611 3.0946 -4.1408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400762516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:41 Heat of formation + Delta-G solvation = 18.276964 kcal Electronic energy + Delta-G solvation = -19023.541701 eV Core-core repulsion = 16362.145856 eV Total energy + Delta-G solvation = -2661.395844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00924 -38.39526 -36.95121 -34.90584 -33.76888 -31.56188 -29.29746 -26.56901 -24.24873 -23.36350 -23.23258 -22.48471 -22.03820 -21.71377 -20.50841 -18.73770 -16.97239 -16.74048 -16.65978 -16.18051 -15.63705 -15.30807 -15.16118 -14.80878 -14.32602 -14.04775 -13.79781 -13.42104 -13.26955 -12.79103 -12.67846 -12.53013 -12.47604 -12.37899 -12.34538 -12.31891 -11.93267 -11.70663 -11.60451 -11.24256 -11.16435 -11.06673 -11.03327 -10.65618 -10.58925 -10.47991 -8.87816 -8.24831 -6.22848 1.33061 1.37823 1.46223 2.37279 2.93722 3.00899 3.08607 3.51815 3.73583 3.93160 4.08416 4.17047 4.19467 4.26176 4.29465 4.34116 4.35300 4.44191 4.50283 4.54867 4.67557 4.82143 4.84147 4.84673 4.86668 4.95940 5.02401 5.08961 5.11586 5.12726 5.17552 5.21770 5.27281 5.32313 5.33677 5.37774 5.43930 5.53035 5.61775 5.76193 6.12469 6.77338 6.83484 6.90187 7.41363 8.92995 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.026107 B = 0.005066 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.252837 B = 5525.811069 C = 5872.869526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.153 4.153 3 C 0.200 3.800 4 H 0.017 0.983 5 C -0.504 4.504 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.923 3.077 10 H -0.284 1.284 11 H -0.213 1.213 12 H -0.287 1.287 13 N -0.688 5.688 14 C 0.065 3.935 15 C -0.097 4.097 16 C -0.013 4.013 17 C -0.151 4.151 18 C -0.189 4.189 19 C -0.162 4.162 20 C -0.145 4.145 21 C -0.172 4.172 22 C -0.183 4.183 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.253 8.038 -7.520 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.192 4.192 3 C 0.090 3.910 4 H 0.034 0.966 5 C -0.543 4.543 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.748 3.252 10 H -0.211 1.211 11 H -0.136 1.136 12 H -0.213 1.213 13 N -0.319 5.319 14 C -0.065 4.065 15 C -0.135 4.135 16 C -0.032 4.032 17 C -0.169 4.169 18 C -0.227 4.227 19 C -0.199 4.199 20 C -0.163 4.163 21 C -0.209 4.209 22 C -0.220 4.220 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.651 8.469 -7.363 22.630 hybrid contribution 0.005 -0.846 1.006 1.314 sum -19.646 7.624 -6.357 22.011 Atomic orbital electron populations 1.21820 0.94937 1.01835 1.01474 1.22575 0.95957 0.99368 1.01295 1.19313 0.93173 0.90041 0.88469 0.96563 1.21384 0.92144 1.36569 1.04173 0.95344 1.25812 0.95986 0.95272 1.01608 1.70117 1.12993 1.46351 1.29771 0.86358 0.82370 0.77450 0.79068 1.21097 1.13572 1.21320 1.60436 1.39550 1.22956 1.08932 1.22043 0.91172 0.95392 0.97846 1.21486 0.98079 0.98023 0.95938 1.20186 0.96572 0.92913 0.93514 1.22250 0.98550 0.98238 0.97843 1.23039 1.03876 1.03882 0.91854 1.22948 1.00190 0.94737 1.01990 1.22154 0.95202 1.02448 0.96491 1.23050 0.93234 1.01317 1.03286 1.22999 1.04772 0.95360 0.98865 0.91787 0.93444 0.92051 0.92715 0.93201 0.92845 0.84940 0.95374 0.92941 0.92438 0.91441 0.91290 0.89206 0.88800 0.89576 0.88577 0.87876 0.88107 0.88814 0.88017 0.88309 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.74 71.98 0.63 -3.85 16 2 C -0.15 -6.24 4.32 30.59 0.13 -6.11 16 3 C 0.20 9.27 1.73 44.17 0.08 9.35 16 4 H 0.02 0.78 6.63 -2.39 -0.02 0.76 16 5 C -0.50 -29.65 9.35 25.60 0.24 -29.41 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.57 5.36 84.65 0.45 1.02 16 8 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 9 Si 0.92 43.88 25.67 68.60 1.76 45.64 16 10 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.21 -8.93 5.12 99.48 0.51 -8.42 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 13 N -0.69 -27.77 6.11 -495.45 -3.03 -30.80 16 14 C 0.06 2.10 5.00 86.30 0.43 2.53 16 15 C -0.10 -2.54 4.84 30.60 0.15 -2.39 16 16 C -0.01 -0.28 2.11 -10.79 -0.02 -0.30 16 17 C -0.15 -3.40 4.10 -10.80 -0.04 -3.44 16 18 C -0.19 -4.15 10.05 30.62 0.31 -3.84 16 19 C -0.16 -2.99 9.88 30.62 0.30 -2.69 16 20 C -0.14 -2.63 4.73 -10.79 -0.05 -2.68 16 21 C -0.17 -2.57 10.18 30.62 0.31 -2.26 16 22 C -0.18 -3.00 9.74 30.62 0.30 -2.71 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 25 H 0.06 1.71 6.91 -2.39 -0.02 1.69 16 26 H 0.05 2.23 8.01 -2.38 -0.02 2.22 16 27 H 0.05 2.16 4.10 -2.39 -0.01 2.15 16 28 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.33 12.31 7.87 -89.69 -0.71 11.61 16 30 H 0.03 0.86 6.41 -2.38 -0.02 0.84 16 31 H 0.05 1.88 7.13 -2.39 -0.02 1.86 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.62 7.50 -2.39 -0.02 1.60 16 34 H 0.07 1.46 7.70 -2.39 -0.02 1.44 16 35 H 0.09 2.31 8.11 -2.38 -0.02 2.29 16 36 H 0.09 1.97 8.05 -2.38 -0.02 1.96 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.09 1.36 8.08 -2.38 -0.02 1.34 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.09 1.54 7.93 -2.39 -0.02 1.52 16 Total: -1.00 -66.14 339.28 2.29 -63.86 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.04 Total: 28.82 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 3.21 Total: -46.77 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -2.73 Total: -91.54 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.76 Total: 45.64 kcal Total: -66.14 2.29 -63.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400762516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.134 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds